| Gene ID | Annotation |
|---|---|
| Am09G024460.1 | dicer-like 1 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G024460.1 | mRNA | Chr09 | 79021089 | 79032977 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00636.29 | Ribonuclease_3 | 1395 | 1540 | 1.40E-57 |
| PF00636.29 | Ribonuclease_3 | 1616 | 1729 | 1.40E-57 |
| PF14622.9 | Ribonucleas_3_3 | 1390 | 1453 | 3.50E-27 |
| PF14622.9 | Ribonucleas_3_3 | 1594 | 1734 | 3.50E-27 |
| PF02170.25 | PAZ | 1215 | 1358 | 1.10E-23 |
| PF03368.17 | Dicer_dimer | 854 | 942 | 1.40E-23 |
| PF00271.34 | Helicase_C | 662 | 779 | 4.50E-18 |
| PF00035.29 | dsrm | 1843 | 1911 | 3.50E-17 |
| PF14709.10 | DND1_DSRM | 1840 | 1911 | 2.70E-15 |
| PF00270.32 | DEAD | 262 | 424 | 2.80E-14 |
| PF04851.18 | ResIII | 267 | 425 | 4.70E-14 |
| Gene family | Subfamily |
|---|---|
| Epigenetic Regulators | DCL1 |
| GO term | Description | Category |
|---|---|---|
| GO:0061157 | mRNA destabilization | Biological Process |
| GO:0016441 | post-transcriptional gene silencing | Biological Process |
| GO:0045087 | innate immune response | Biological Process |
| GO:0051607 | defense response to virus | Biological Process |
| GO:0009908 | flower development | Biological Process |
| InterPro term | Description |
|---|---|
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR000999 | Ribonuclease III domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR036085 | PAZ domain superfamily |
| IPR003100 | PAZ domain |
| IPR006935 | Helicase/UvrB, N-terminal |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR014720 | Double-stranded RNA-binding domain |
| IPR038248 | Dicer dimerisation domain superfamily |
| IPR005034 | Dicer dimerisation domain |
| trEMBL term | Description |
|---|---|
| A0AAN9ISX2 | _ |
| SwissProt term | Description |
|---|---|
| DCL1_ARATH | Endoribonuclease Dicer homolog 1 |
| KO | Description | Enzyme |
|---|---|---|
| K11592 | endoribonuclease Dicer | [EC: 3.1.26.-] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G01040 | dicer-like 1 |
| Medicago sativa L. | MsG0780041814.01.T01 | _ |
| Oryza sativa L. | LOC_Os09g14610.2 | DCL2, putative, expressed |
| Cucumis sativus L. | Csa000411 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000116s00009242.2 | _ |
| Codonopsis lanceolata | Cl_chr07_08280T | _ |
| Arachis hypogaea L. | AH16G14520.2 | Endoribonuclease Dicer homolog 1 like |