Gene detail

Detail information of Am09G024260.1 Annotation

Gene ID	Annotation
Am09G024260.1	RNA-binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G024260.1	mRNA	Chr09	78575034	78581851	-

Sequences

CDS:

>Am09G024260.1
ATGTCAGAAAGTGCAGAAATTGATGAGCGTGTGGATCTTGATGAGGAAAATTATATGGAAGAGATGGATGATGATGTGGAAGAACAAATAGATGATGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGCGGAAGAACAGGACTATGAGGAGTCACCGACGGAGGCTGGTGGGAAAGACCAATTGCCTGAAGGAGAAAAAGATAACATTGCTGCTGGATTTGTGGAAGATGAGCAAAAGCCATCTCTCATTGATGATGATGAGAAAGAGAAGCATGATGAACTTCTTGCTCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACATGTGAAGATGATTTAAGGGATTTGTGTGAGCCAATGGGTGATATTCATGAGGTTCGGTTAGTGAAAGACAGGGACACTGGAGATAGCAAGGGTTATGCTTTTGTGGCTTTTAAAACACAGGAGGTGGCACAAAAGGCCATTGAAGAGATACACAGCAAGGAATTCAAGGGTAAAACTTTGAGGTGTTCACTGTCTGAAACTAAACACAGATTGTTCATCGGCAATGTTCCAAAAACATGGACTGAGGATGAGTTTAGGAAAGTTGTTGATGGTGTTGGTCCTGGAGTTGAACACATCGAGCTCATAAAGGACCCTCAAAATCCTGGCAGAAATCGTGGGTTTGCTTTTGTTTTGTACTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGGCAAGTGCGAGTTTCAAGCTAGAGGGAAATACCCCTACTGTCACGTGGGCAGATCCAAAGAACTCACCCGACCATTCTGCTTCTTCGCAGGTCAAAGCTCTGTATGTAAAAAACATACCCGAGAATGTTACTACTGAACAACTAAAGGAGCTATTCCGTCGCCATGGTGATGTAACAAAAGTGGTCATGCCACCTGGCAAAGTTGGAGGGAAACGTGATTTTGGTTTCATTCACTATGCAGAAAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATACGAAATTGATGGACAAATGCTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGAAAAAAAGCCCGATGGTTTCGGCTACAATCCTGGACTTCCTCCAACCCATCTTCCACATCCTGGCTATGGTAACTTTTCTGGAAATCCGTATGGCTCTTTAGGAGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATACGGTAGGGGTCCAATGCCAACGGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGAAGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGCTGCCCGACCCCGCAGAAATGACCGGGGCAATGGTCCAAGCGGTCAGCCTGGTCGAGGAGGAGGTGGTGGTAATGATGAAGGAAATCGTAATAGGAGGTACCGACCCTATTAG

Protein:

Promoter(3k):

>AM09G024260.1
CGAGTACAGGGGCATGGCTCAAGCAACATCAGAACTGTTATGGTTTCAGTCTCTACTGCAGGAACTCAGAATTCCATATCAGTCACCTACCTTACTATGTGACAATCTCTCTGCTGTAATGCTTGCACATAATCCCATTTTGCACTCTAGAACTAAACATGTTGAGCTGGACATCCATTTTGTTCGTGAAAAAGTTGCTGCCAAGACTCTGTTTGTCAAACATGTCCCAGCTACTATGCAGATTGCTGATATCTTCACAAAGCCCCTGGGCACAGCCTCCTTCCAGCTACTCAGAAGCAAACTCAGAATCAGGGATCTCCATGAGTTTGACAGGGGAGTAATAGAGACTAAATCTCAGTCAACAGTTGACTTAGTTAATTGTAATTAGCAGTTAGTTAAAATAGCTTAGTTTGTTACAGTTTGTTAAGCCTTCTGTTAAGTTGTTTTGCTAAACTGTAACTGTATGTAGTTATCTTTTCTTTTGTAACACTAAGCTACAAATACACCTCAGGGTCTTACTTTTGTAATACAGTGAAATCACTTTATCAAATATCAATACTATCAATTTCTTCAAGATTTCTCCTTCTGTATAACTTCATCATTGCGGACGAAGTTCCAACTATATGGAGAAGGATAAAAAGGAAGAAAAATTCCAATTATGAAATTTAGGGACTATTGTGGTATTTATACCAAATCAATTTGTACTTGGAGAGCCATTGTTATTGCTTGCAAAGATGTGGAACGAAATATTATTTGGGTTATTAGAAATGGTCATGATACTCAATTTTGGAAGGATAATTGGATTCCGGGAGTAGATCCCCTCTCAGTTTTTTTGGAAACCTCCATTCCCACTACTGAATTAGACTTTTCCGTCTTCCACTATACTATTGATGGTAATTTGGAATTGGCCACATTGATCCAAAGAATTGTCCCTAAGGGATCTTGATAAATAACTTTCTCAAATCCCCTAGCTCGGCCCCAAATGATTTTCCTTGTTAGAATCTATCTTCTGATTGTTTTTTTCTTTGAAATCAGCATAGGCTCTTTTGTCTGTGCAGGAAAATAATTCAGAAGAGCTTTACCCCCAATCTTATCTTTTCTAAGATTTGGAAGTGGACGGGTCCTATGGAAGCTTTCCCAATACCGACTAATGACAAATGTTGAAAGAAAAAGAAGGGGCATAAGCCGATGATTTATGTCGTATATGCCATAGTTGCCTAGAAACTATCATGCATATGTTACATGCTTGTGACGAAGTCAGACTTTTGGACTAGCTTCATTGACAATGAACAATGGAGTCAGTTCTTTAGTATCAGCTTTCATAATTGGCTTGATTGGAATCTTTCATCTAATGAGATAGGGTTCCATAATGGAAGTTGGCCAATTGTTTAGAACTTTTCTCAATGTTTAGAACTTTTCTCAATGTTTAGAACTTTTCTCATTTTGGTTAATGATGCAAGTTTGCCTAATTAATGAACGTGATACAAGGCTTTCTCATTCTATTAATGTCAGTTGGAGTGCTCCACCAGAAGGTTGTATGAAAATCAAAATAGTCGGTTCTCATTGTGGTGGTCTCGCTAGGGATTATCAAGGCAGATTCATTCAAGACTTTTATAAGAAACTCGGGTCTTGCAATTCGATATGGGTCAAGCTTTAACTCCTCGTTTGGGTATTCAGATAGCTTTAAACCTAGAGATTGATCAGATTGTCTTCGAAATGGACTCAAAAGTTATTGTGGACATGGTTCATAAGGAGTCTACTCATATCCGCTTCCTCAAACCTATTATGCAAGAGGTTATATCACTTCTCTGATTGCCTTCTTGGAGAACTCTCGTCCACACATATTGTGAAAGTAAATAAGTGTGCATATCTGTTAACTAGCAAAGGACGTAATGTTCCCTATAATGGTGTTATTTTTCATTCCAGTTTTTCCTTTCTAGAGATGCAATCACTTGCTGATGCTAGAGGTGTTTCTACCTCAAGGAATGTTCCTTAGTTGTATCCCCCCTTTGTTTGTGTATAAACAAAAGTTGGGGGTATGTGTAAAAAAAACGATTGGTGTGTATGTAGTTAATAAAACCCAAATATCATTTTATTGACCGTCTTTCAAAGGTAGGACAACTTTTCGGTTACGTGGAGGAAAGTGATTGGTTTATGTGCAAGTGTGCAAGTGAAAACGATCGCTTCTTATTGTCGATGCTGCTCGTTTTGACACAGTCTTTGTTTGCCTACCTCTTTATCTCTCTCTCTCTCTCTCTTCAGGAGAAGGAAGAAGAAGGCGAAGATTCACAGAACAGAACCCACTCAGAAGCAAATCTGAAAACCCCTCATTTCTTACTACTGGTATGCAATAAAAAATCACTCCTTTATCTTTTCCTTCACTTCACGCTCCATCAAATCAAAATCAAAATTCAATAAATAAATATGCCTCTCACTTTCTTCAACCTGCCATCTCTCAAATTTTACCACGCTCCTTGTTTGGATCCAAATCTCATTACTCCAATTTCACACCCCTATATATCAACAAAGCATCTTTCTTTTTGGTATGTCACATTTCTCTGTATTCATTTTCTCTTCCCACTCACATCATAGGGTTTAAACCCTAATCTTGAAGGTTTTATTTTTATTTTTCCTATGCGCTAGATTTGCACTTATTTTGTTCTAATTTTATTTTAATAGCTCATTCGATTGGTTATATCGCTTATCTGTTCCTTTATTTACATAGGAGAAATGTAAAGTTCTGTTTTCACACAGCTTTGTATGGTGCATTTGGAGGTTTCCCGGGTTTTCTCTGTGAACCATGTCATACCTTTAACCCTAGGAATATTTTTCCTTTTTGTAAAAGAAATTACCTTGAAACCCCGTGACTTTAAAATCCTCTTAACTTTCCTTGGGTATCACTGTCAACCCATACAGCTACCTAGTATTCCATACAGAATTTGTGATTAATGTCCGAACCTGCAGGTGTTTGTCAGTTAATGACAAAATTCTGAGCCAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	105	175	6.50E-50
PF00076.25	RRM_1	185	249	6.50E-50
PF00076.25	RRM_1	280	346	6.50E-50

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0040029	epigenetic regulation of gene expression	Biological Process
GO:0042742	defense response to bacterium	Biological Process
GO:0045087	innate immune response	Biological Process
GO:0045893	positive regulation of DNA-templated transcription	Biological Process
GO:0019853	L-ascorbic acid biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
I1JS33	_

SwissProt

SwissProt term	Description
HNRPQ_ARATH	Heterogeneous nuclear ribonucleoprotein Q

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G00830	RNA-binding (RRM/RBD/RNP motifs) family protein
Medicago sativa L.	MsG0780041796.01.T02	_
Oryza sativa L.	LOC_Os11g14430.1	APOBEC1 complementation factor, putative, expressed
Cucumis sativus L.	Csa008014	_
Glycyrrhiza uralensis Fisch.	Glyur000369s00020539.2	_
Codonopsis lanceolata	Cl_chr04_07900T	_
Arachis hypogaea L.	AH06G10000.1	Uncharacterized protein like

Expression pattern