Gene detail

Detail information of Am09G023960.1 Annotation

Gene ID	Annotation
Am09G023960.1	Transcription factor jumonji (jmjC) domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G023960.1	mRNA	Chr09	78059731	78071269	-

Sequences

CDS:

>Am09G023960.1
ATGACATTGGTAAAAAAAAAACGTGAAAGAAGTTTGATGTGCCATCAGTGCCAGCGGAGTGATAAGAGTGGTGTTGTCAATTGCTCCAGTTGCAGCAGAAAACGCTATTGTTATGACTGCCTTGAGAAATGGTATCCTGGAAAAACCCGAGAGGAAATTAAGAATGCATGTCCATATTGTTGTGGAAATTGCAACTGCAAAGCTTGCTTGCGGGAGGTTCCTGTGCTAAAGGACAGAGAAGTAAATGCCAGTGTCAAATTGCAGCGGCTACTGTACTTGTTATCTAAGGCTCTACCAGTCCTCAGGCATATCCGCAGGGAGCAGAGCTTGGAGTTAGATATTGAAGCCAGAATAAGAGGTAATCAACTTCAAGAAATTGACATAACAAGAACAAAGCTAGATGAAAGGGAGCGCTTGTACTGTGACAATTGCAGTACATCTATTATTGGATTTTATCGTAGCTGCCCCAACACCAGTTGCTCTTATGATCTTTGTCTCATGTGCTGTCAAGAGCTCAGAGAGGGTTACCAACCTGGAGGCATAGAAGCTAAAACATCTCATGAACAATTTGCAAAGAGTTTTCACAATCATGATTCAAAAAAAACTCATGGTAAAAGATATGGGTGGGAGGGCGAACTTGCACCTACTGGTTTTCAATTTCAAGCTGACACGTTGTCTCCATTCCCGGGATGGAAAGCTAATAGTGATGGTAACATTCCATGCCCTCCAAAGCAGCGTGGTGGTTGTGGTGCTGCATTGCTAGAACTGAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGATCTCACTAGGAGTTATAAACCTCTGGATGTGGATATTACTGAAAAGTGTTTATGCCAGCTAAATTTGTTTGAAGGAAAAATCAATTCTGAGGTCAGAAGGGCAGCATTTCGAGATGATAGTAATAATAATTTTTTATACTGTCCAAATGCCCTTGATATTTCTGATGATGAGGTCGAGCACTTCCAAAGGCATTGGGTGAGGGGAGAGCCTGTGGTTGTGAGAAATGTTCTGGACAAGACATCCGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAATGTGAAGTTCAAAGAGGAAACAAGAAGTGTAAAAGCCGTTGATTGCGTGGATTGGTGTGGGGTTGAAATTAATATACACCAATTTTTCCAAGGCTATCTAGAGGGTCGGATGCATAGAAATAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCGACCTCTTTTGAAGAGCGTTTGCCGAGGCATGCCTCTGAATTTTTTGCTGCACTCCCCTATTTGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCTAGTAAACTTCCTGCTAGCTCACTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGGTTTTCTGAAGAGCTTGGTAGAGGAGATTCAGTTACAAAACTACACTGCGACGTGTCTGATGCGGTCAATGTGCTGACACACACAAACACGGTGAATATAGCTTCCTGGCAGAGAGATGCCATAAATAAGTTGAAGAAGAAATATGATAAAGAAGACAATTTTGAACTTTATTGTGAAACATTAGCTAATGTTGATGGAAGATCTAAATCTAAAGCATTGAACCATGACCAAAAGGCAGAGAATCGACTTAACCTGACTTCACCGAGTAGCCAAATAAATCAATGCATTTCATCTATATCTGAAGGCTTAAGTGGAAAGTTCGAAACTCAGAACACAAAACAATATGATGATAATGGAAACCACTCATGCACCTACAAAAATATTAGTGTAGGAAGCTCCTCTATGAAAGATACTGTTAGTAGGGAACATGTTCAATCTGCAATAAGCTTAGCTCCAAGTGATACAAACATAAAGAAAGACAAAATGAAGATTAATTTTTCCGTTGGTACCGTGTCTGGTGAACCCAAGATGGAGTCAAAACAAGGCATGGGAAAAGATTCTCTCGACATTGAAAATGGAGCTGAGGTTGTCCTTGGTGGTGCTGTTTGGGACATCTTCCGTAGACACGATGTCCCAAAGTTAATTGAGTACTTAAGAAAGCACAAGAAGGAATTTCGTCATCTCCAAAGTAAACCTATTGATTCTGTTATACATCCCATTCATGATCAAACTTTCTTCTTAAATGAGTGGCATAAGAAACAGCTAAAAAGGGAGTTTAACGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTCTTATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAGTCATGTATAAAGGTTGCACTTGATTTTGTTTCGCCGGAAAATGTTGGAGAATGTTTACGACTAACTGAAGAGTTTCGTTTGCTCCCAAAACATCACAGAGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACTCTTTATGCCGTAAGTAATGCCATTAGAGAAGTCAAAGAATTGATAATGGCCAATGAAGGCAAGTTTAGACTAGGTGAAAATCATTTACACATTTTTTTGGAACATTTCTTGTTAGAATATTAA

Protein:

Promoter(3k):

>AM09G023960.1
CACTAGATCAACCAGTTGGCTTATTGAATTATAGAGATAACACCACTCCAAAAATATACATGAGCTTTTGTAAACAAAAACATACATGACAAAATTAAGATTCTTGTACAAATTCACGAAAAAAGTATATTTTAAACGAAACGTGTAATAGTACTATATGAAAAAAGGAAACGTGAACCGACAAGAGTTGGTCCAAGTGGCAACTGGATTTGGATCCCACCCCCAAGGCCTCAGATTTGAATCTTGGGTGTGGCAAAAGCTCTGTTGGGAGGGGAGAACCACATGGCCGACAAAACTGGGTACCCGTGGCCAACCAGATTCCTCGGCGTAGGTCTGTGACAGATATACTTCTCACTAGTTATTTACCATTTTACTGTAGTAACTTTACTTTTATTGTATTAGCCCTAGTGTGTACTACACTTTACCTATTGTACTACAATTTATATTTCAAGTATTCCAGAAGCCTATGAGCTGCACATGTTGTACTAGCCATAGAGAAAATATATTTCATTTGATTGGTTGTACTAGATTCTATATATTCTCTCCATCATTAATGAAAGGGCTGAATCATTGGAAATCATTTATCCTCTTTCTTTCCTCACCTTTACTGTGTACTAGCAGAATATAGTACTTGAGCTTCTCTTTCCGGAATTTATTCCACCATTAGATTCCCTTGAGAGTACTCACACTTATCACAATTTCTCCCTTAAGTCCAAACTGTGACAATATGCTACTGTACAACAACTTCTCAAGGACTTGGCTACTGATCCATAGTCCCATCCCATGTTCAGTTGGAAGAATGACTTGCTGAGAAGGAATGGGAAACTTGTAGTTGGAAACGACTCTGTGGTGAAGAGTACTATCCTTCAGTGGCTTCATGACTCTGCCACAGTGGGGCATTCAGACAGAGATAACACCCTGGCTAGAGTTAAGTCATTATTCTTTTGGAAAGGCATGACTAAAGAAATTCACAACTATGTTAGAGAGTGTTTTGTGTGTCAAAGACATAAACCGGAGCAAGTGGCATCTCCAGGGCTACTGCAGCCACTTCCAATTCCTGGCAGAATTTGGGAAGCTATCAGCTTAGATTTTATTGAAAGGCTCCCCTAATCAAAAGGCAAGCATGTGGTTTTAGTTGTGGTGGACAGACTAAGTAAGTATGCTCACTTATTAGCTCTCCACCATCCATACACCGCACTTGATGTAGCTCAGCTATTCCTTGATTCCATTTTTAAATTACATGGAATGCCTTCTCCAATCACTAGTGATCGTGATCCTATATTCATTAGTGAGATATGGTCAGAATTTTTTCCTTGCAAGGTGTAGCTCTGAATAAATCCAGTGCATATCATCCATAGAGTGATGGGCAAACAGAAATTGTTAAGAAGGCTCTTGAAACTTATCTGAGGTGTATGACTTCTGAACAGCCCCAAAACTGGTCTCATTGGTTGCCTTTGGCTGAGTTTTGGTATAATACAAACTTTCATTCATCCATTAGGACTACTCCTTTTGAGGTTGTATATGGCCAAGCACCACCCATCCACCTCCCTTACGTTCCTGGGGAGTCTACTAATGCTGCTGTGGATAGAACTCTCACTGCCAGAGAGGAGGCTATTAAGTTACTGCAATATCATTTGGTGCGTGCTCAGAACAGAATGTCACATCAAGCAAACAAACACTCGTGTCTTTGCTATTAGGGGATTTTATCTTCCTCAAACTTCAACCATACACGCAGTTCACATTGAGGAATCAAGCTTTTCACAAGCTTAATCCTAAGTTCTTTGGACCATATCGCATCACTGATAGGATTGGCAATGTAGCCTATCAGCTAGAGTTCCCTTCAACTACCAATATCCACAACGTTTTTCACGTTTCTCAGCTCAAACGCTGCACTGATCTTTCTGCTGCTGTTATTGATCATCCTGCTGCTCCTGCTGTCATTACATCCAAGGGAGAACCTGAAGCAATTTTGGATAGAAAGATGGTGAAACGTGGGCGTAGGGCTGCAACAAAAGTGCTTGTTAAATGGAGGAATTTGGCACCTGGGTTGGCTACTTGGGAGTGGTATTATGACCTCCTGCATGATTTTCCCTCTTTTCACTCTTGAGGACAAGAGTGCTCTCATGGGGAGGGTATTGTGACAGATTTACTTGTCACTAGTTATTTACCATCTTACTGCAGTAACTTTACTTTTATTGTATTAGCCCTAGTGTGTACTACACTTTACCTACTGTACTACAATTTATATTTCAAGTATTCTAGAAGCCTATGAGCTGTACATGTTGTACTAGCCATAGAGTAAATATCTTTCATTTGATTGGTTGTACTAGATTATATATTCTCTCCATCATTAATGAAAGGGCTGAATCATTGGAAATCATTTATCCTCTTTGTTTCCTCACCTTTACTGTGTACTAGCATAATTTAGTACTTGAGCTTCTCTTTCCGGAATTTATTCTACCAATAGATTCCCTTGAGAGTACTCACACTAGGGATGGCAAAATAGGCTTAGCCCGTCGGCCCAGCCTGCTAGCCCGCCAAAAAATGGCAGGTTGGGTTGGTGATTTCACCCCACCAACTCGTTGTGGCCCGCCCCGCCTAACCCGCCAATTCGGTGGGCCGACCCGCCAACTTTTTTTTCCCTTATTTTTATCCATTTCAAAATATTTTTTAATGTTTTTTGGCGGGTTCTAACGGGCTAACCCGCTAACCCGCCTATTTTAAGCCCAAAAAATATGCTTTAAATACATTTTTATTTGTTAATTTGGATGGCGGGCTAGCCCGCTGGCCTGCCAAGGGGCGTGGCGAGCTCAAGTTCTCAACCCAATATCTTTTGGCAGGCTAGCCCGCCCCGCCTATTTTTTGACGGGCTCACGACGTGGCCGGGCGGGCTGGGACGGGCCAGCCCGTTCTGCCATCCCTAACTCACTTATCACGATTTCTCCCTTAAGTCCAAAGTGTGACAAGGTCATCTGCAAAGCAAGTGTAAACTACGCACCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02373.25	JmjC	683	780	1.50E-17

Gene family

Gene family	Subfamily
Transcription Factors Family	Jumonji
Epigenetic Regulators	JMJ27

Gene Ontology

GO term	Description	Category
GO:0008168	methyltransferase activity	Molecular Function
GO:0005739	mitochondrion	Cellular Component
GO:0032259	methylation	Biological Process
GO:0061799	cyclic pyranopterin monophosphate synthase activity	Molecular Function
GO:0006777	Mo-molybdopterin cofactor biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR003347	JmjC domain
IPR007110	Immunoglobulin-like domain
IPR045109	Histone demethylase JHDM2-like

trEMBL

trEMBL term	Description
A0A1S3E1F4	_

SwissProt

SwissProt term	Description
JMJ27_ARATH	Lysine-specific demethylase JMJ27

KEGG

KO	Description	Enzyme
K15601	[histone H3]-dimethyl-L-lysine9 demethylase	[EC: 1.14.11.65]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G00990	Transcription factor jumonji (jmjC) domain-containing protein
Medicago sativa L.	MsG0180003786.01.T01	_
Oryza sativa L.	LOC_Os03g31594.2	jmjC domain containing protein, expressed
Cucumis sativus L.	Csa020849	_
Glycyrrhiza uralensis Fisch.	Glyur000121s00009731.1	_
Codonopsis lanceolata	Cl_chr07_07060T	_
Arachis hypogaea L.	AH06G09550.1	Lysine-specific demethylase JMJ25 like

Expression pattern