Gene detail

Detail information of Am09G023260.1 Annotation

Gene ID	Annotation
Am09G023260.1	cell division cycle 5

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G023260.1	mRNA	Chr09	76656454	76662546	+

Sequences

CDS:

>Am09G023260.1
ATGAGGATTATGATAAAAGGCGGTGTTTGGAAAAACACCGAAGATGAAATTCTGAAAGCTGCTGTTATGAAATATGGCAAAAATCAATGGGCTCGTATTTCTTCCCTTCTCGTTCGCAAATCTGCAAAACAGTGTAAAGCTCGTTGGTACGAGTGGTTAGATCCTTCTATTAAGAAAACTGAATGGACAAGAGAAGAAGATGAGAAACTTCTTCATCTCGCTAAGCTTATGCCTACTCAATGGAGAACTATTGCTCCAATTGTTGGCCGTACACCTTCTCAATGTCTTGAACGTTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGATGATAACTATGAACCTGGTGATGATCCTCGTAAATTACGCCCCGGGGAAATTGATCCTAACCCTGAGTCAAAACCTGCTCGTCCTGATCCTGTTGATATGGATGAAGATGAGAAAGAAATGCTTTCTGAAGCACGGGCTAGGTTGGCTAATACGAAAGGAAAGAAGGCGAAAAGGAAAGCTAGGGAAAAACAGCTTGAGGAAGCTAGGAGACTTGCTTCTTTACAGAAGAAGAGAGAACTTAAGGCTGCTGGAATTGATATTAGGCAGAGGAGGAGGAAGAGGAAAGGGATTGATTATAATGCAGAGATTCCGTTCGAGAAAAGGCCTCCTCCGGGGTTTTTTGATGTTGCGGATGAGGACAGACCAGTTGAACAGCCTAATTTCCCTACTACTATTCAAGAACTTGAGGGAAAAAGAAGGATTGATGTTGAGGCACAGTTGAGAAAGCAAGATGTTGCAAGGAATAAAATTGCAGAGAGGCAAGATGCCCCGGCTGCTATTATGCATGCCAACAAGCTTAATGACCCAGAAACAGTTAGAAAGAGATCAAGACTTATGCTTCCACCACCTCAGATTTCTGACCAAGAATTGGATGAAATTGCTAAGATGGGTTATGCGACTGACCTTGCTGGCAGCGAGGAGCTTGGGGAAGGCAGTAGTGCCACGCGTGCTCTTCTCTCTAATTATCCACAGACGCCAAACCAAGCTATGACTCCTTTAAGAACTCCTCAGAGGACGCCGGCTAGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATTTGGCCAGGTTGAGGGAGTCTCAGACACCGTTGTTGGGAGGAGAGAACCCAGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACACTCCAAACCCATTACTGACTCCCTCTTCAACTCCTGGAGGTGCAGGCCTTACTCCCAGAAGTGGTATGACGCCGGCAAGGGATGGTTTTTCTTTGGGCTTGACTCCCAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAAGACGTGGATATGCATGACAGTGCTAAACTTGAGCTACGGAGACAAGCTGAGATGAGAAGAAGTTTGCGCTCAGGTTTAAGCAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTTCAAGAAGATGCTGACGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCAGAAGAAGAGGCACGGCATCAGGCATTACTTAGAAAACGGTCAAAAGTTCTTCAAAGGGGACTTCCAAGGCCTCCTGCTGCATCTTTGGAGCTTATTAGAAACTCCTTGATAAGATCTGATGGGGACAAGAGTTCATTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATAAGAAAGGAGCTGCTCACCTTACTGGAGCATGACAATGCTAAGTATCCACTTGATGAGATAGCAATAAAGGAGAAGAAAAAAGGAGCCAAGCGTGTGGCAAATGGGCCTGTTGTCCCTGTGATAGAAGATTTTCAGGAGGATGATATGAAAGAAGCTGATCAGTTGATAAAAGATGACGCCCAGTATCTTCGTGTGGCAATGGGGCATGAAAATGATTCCCTTGATGAATTTGTTGAAGCACATACGACTTGCATCAATGATTTAATGTACTTTGTCACCCGTAATGCCTATGGTTTATCAAGTGTTGCGGGAAACATGGAGAAGCTAGCAGCTTTACAGAATGAATTTGAGAATGTGAGAAGCAAGTTGGATGATGGTAAGGAGAAGATGATACGACTTGAGAAGAAGGTTACAGTACTCAATCAAGGTTACGAGATGAGATCAAAAAAAGGTCTCTGGCCGCAAATCGAGTCCACTTTCAAGCAGATGGATGTAGCTGCAACAGAATTCGAGTGTTTTCAAGCTTTACAAAAGCAGGAGCAATTAGCAGCATCACATAGGATAAACAATCTTTGGGCTGAGGTACAGAAGCAAAAGGAACTTGAGAGAACTTTACAGAAGAGGTATGGGGATCTTATCGCAGAGCTGGAAAGGATAACAAATGTAATGGAGCAGTGCAGGGTACAAGCACAGTTGCAAGAAGAAATGGAAGCAAAGAATCGCGAACTTGAGAGTACTAAAGCTACAGCTGATGAAATTAATGTGCAGGGTACAGAAGAGGTACAAGCACAACAAGAAGAAAAAATTGAAGGAAAGAATCATGCACTTGAGAGTACTACTAATGCCACAGCTGATGGAGCTGCTGACCAGGAAATAGACATTGTTCAAGATCAGGACCCTTCTAGCTCCAAAAATGATATGGATGTGGATTCCCGTGAAGAGGAAACGGCACACAACACCGATGTTAAATTGCCAGATGCACCTGTTGCGGAGGATGAGAGTGCACAAGTGGCAGATGGTGAAAACATTGACACCACACTAGTAGGTACGAGTGCTGCAGTGGAAATAAATAGTATTGAGGGAAATGGGGAGGATCCAAATGTTGGGAATCCAGATGAGGTTGTAGAAGCTGCAAACCAACCTGATAATAATAGCATAAAAGAAACCACCCCGCATGATGACATGGAAGCTGCTGATGGTAAAGTAGAGGAGGTAAATTAG

Protein:

>Am09G023260.1
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPNFPTTIQELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAIMHANKLNDPETVRKRSRLMLPPPQISDQELDEIAKMGYATDLAGSEELGEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHTPNPLLTPSSTPGGAGLTPRSGMTPARDGFSLGLTPKGTPLRDELHINEDVDMHDSAKLELRRQAEMRRSLRSGLSSLPQPKNEYQIVMQPVQEDADEPEEKIEEDMSDRIAREKAEEEARHQALLRKRSKVLQRGLPRPPAASLELIRNSLIRSDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDEIAIKEKKKGAKRVANGPVVPVIEDFQEDDMKEADQLIKDDAQYLRVAMGHENDSLDEFVEAHTTCINDLMYFVTRNAYGLSSVAGNMEKLAALQNEFENVRSKLDDGKEKMIRLEKKVTVLNQGYEMRSKKGLWPQIESTFKQMDVAATEFECFQALQKQEQLAASHRINNLWAEVQKQKELERTLQKRYGDLIAELERITNVMEQCRVQAQLQEEMEAKNRELESTKATADEINVQGTEEVQAQQEEKIEGKNHALESTTNATADGAADQEIDIVQDQDPSSSKNDMDVDSREEETAHNTDVKLPDAPVAEDESAQVADGENIDTTLVGTSAAVEINSIEGNGEDPNVGNPDEVVEAANQPDNNSIKETTPHDDMEAADGKVEEVN*

Promoter(3k):

>AM09G023260.1
GGAGACGGCGGCGAGGGTGGTTTCGTGGTGTACGGCGGAGGGTGGACGCGGACACGATGGGGGGAGAAACGGAGTTGTGGTGCTTCGGTTCTGTGTTGTTTGATGGTGGGGGTGTGGCGCGAGGATGGTATACGGTTGGGAGAGGAGTCGGTTCGGTTGGTGGCGGCTCACGGCGAGACCACGGTGGTGGCGGCCACCGCTTGCGGTGGTGACCAGAAACTCGGGTTCGACTCTCTCTCTACTCCTAATTTCTGATTCTACTCTTTTAGTTTTCTTTATGGCTTCTAAAAAACAAAACCTAAATCTGTGCAACTAAATTTTTGATTTCTTTCAATCTTGCTTCCGTTCTCTGTGCTTTCCTACTCATTGTTGCATATATGACAAACTGAATAACACTTGACAGATGATGGTAATATTCTAAACGACTAAAAAAAAGCATGTTTGAAATCACAACTATGAACATATCATTATTACATATTGGCTTAGCAGGTACTTGAACTCGAAAATAAAACCTAGAGCATATGTCTATGAATCTTAAAAACGTGACTGACCTTTCTTCCTACCCTCTGAAAGCTGCTGCGTGTGTATATGGCTCTCTATTTTCTCCCCCCTAATTTTCAGGTTTAAAGAAAAACTAGTTTCTGCACATGCTTTGCTGTGTGTTTCTTTCTTTTTTTCTGTCTGTGTATTAGAATTCTGGGATGAATTCTAATTTTCTCAGCTGTGTATTGCTGTGTTTTCTACTGTTTTGTGAATTGCTCTGTATGTATATGGCTGTTTGTTACTGTGTTGTATTTTCTCTTTGAAATTGTCCCCTCCTTTGCTGATTTCAGTTCATTGTATTTATAGGCAGGAAATTATGGTGTATGTGTGGGTGAGATGTAGGAAATCAAAACTCACAGGAGACCACTACTAAGGCAGCAGCAAGGGAGGAACAGGGCTGCTGCCACTGCAGCAATGTTTTTGCTGAAAATGGATGCCAAACAAAAGAGACAAGAAGAAAGAAACTTGGGCTTTTAGCTCCAGCAAGTCGCATGCTGTCTTGATTTTGCTTTATTATATTTTTTGTACTCTTTTTCTTGCTTTTAATTAATTTTGTACCATTTGTATTTAATTTTTTTTGTCTATATGTAAATAAAACAGCTGACTTTCTTTTTTGTACTATTCAGCTTTTTTTTTTTGTTTTTTGTTTGTATTTTTGGACAGTTTGGACTCTAAACACTCCTAAATTGTAATAAAAATAATATTTGACATTTTTGGACTATGAACTACTCAAAATAAATTAAAAAGGCAAATAAAGAATACTAAAAAAAGAACTAAGAAGTTGGGCCAAACACCAAACGAAAATGGGTCCGACTGAACAAAAGTGCTTAGAATGAAACCCAAATAGAAGAAATAGGCCCATTAAGCGATAAATACTAAAAAAATGAATCGGAACCACGTTTGTAGGCCCAAATCAAAGTGATAAGCCCAATAGTGAGAAAAGCGACTTAAATAAGCCCACTTAGGTTCAACTAGGCCCAAATATCAAGATTAAACTGAAGAATGCGCGAAAAGATCGATCATTCGCGCGCATGCCTAGCTTAAGTAACGGTATTTCGACTTAATTGAACGGATAATTGAAATTGGCTTAAATTAAAAAAAGACGCTATTCTAACTACTCAAAATACAAATTAAATAAAACAAGTGACTAAAAGAAGGCGGACAAAATTGGGGTATGACAATCGAGAACCCCCAAATTTAGAGGGTTTTCATGGAGCTCAAAAAATAAACTAGGAGAAGAGTTGAGGGTATGAGGATAAGTTTTCTCTCAATCACTAAAGAATTTACACTATTAGTCTCATGCCTTCCCCTCCCCTCATCTCCAATCTTCCAAACACACTTAGTTCGTTACATGGTTAATGAGTTATCGTTTTTTTTGTTGATATAATTAGTTTCTATTTTTTAAAACCATAAAAAATACATGGTTAATGACTTATTACAAATATGATTAATTACAAATATGATTAATTTAGTTAATTACATAGTTATTGAATTATTTTTTTGACAAGGTTATTGAATTATTTTGATTCTACATTTTTCACAACTCGCTAAAATATGCATCATTAATGTCTTGTAAATATATAGTTCATTCTTTTTTCAAAATAGTTAATTTTTTTTATAAACAATTAGAGGGGGTGGGGGAATACAAAATAGTTAATTATTGGCTAAAGTGTTTTTGGGGTCCCTTATCTTTATTTAAAGTAACGATTTGGTCCTTTATCTTTTTTTTGTCCCAAATCAGTCCTTTATGTTTTAAATTTTTGACACATAAATCCTTTTCTGTCCCAAATCAGTCCTTTATGTTTCAAATTTTTAACACATAAATCTTTTTTTTTAACACATAAATCAACACTGTTAAACGGAAAAGGATTTATGTGTCAAAAATTTGAAAGATAAAAGACTTATTTGGGACAAAAAAAACATAAAGGACTAATTCGTTACTTTAAATAAAGATAAGGGATCCGGGAGCACTTTAGCCTTAATTATTTTATGGATAATGTGTTGGGGTATTTTTTTTTGAATGGATGAGTTGGGGTTTTTCACGAGTGACCAATTTGTCCTTCTTACTCTATATTTTTTACTTCCGGCACATTTTCTTTCGTATTCAGTTGATATTTTCGGATACAGGCACACACACCTCCCTACTGCGGCGATTCTGCAAACCAAGTGAAGGCGAGAGCTGCAAACGGCGAACTAGGGAACGGCAGCCACCCTCTGCGAACGTCGACCGGCGGACTGAGACGAGCAGCGATCTCGAGCATCGGCGACACTGTGAGCCGCGAGCCCCTGCCTCTGCAATCGCAAACCCTTCTTTTTCTTCTTCTTCAACAGTTCGATCCACAGGTTCGTTCTCTTTCTTCTTCTCCCCCCTTTGTTTTTCTCCCCTGTAAAGTGTTCTCTAGACTCACACCCATAAGTGGTTTAAAGCAGTGTGCTTAATAACAAAGGTTTGCGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF11831.11	Myb_Cef	406	655	1.20E-62
PF00249.34	Myb_DNA-binding	8	53	1.60E-21
PF00249.34	Myb_DNA-binding	60	103	1.60E-21
PF13921.9	Myb_DNA-bind_6	10	70	2.30E-21
PF13921.9	Myb_DNA-bind_6	62	113	2.30E-21

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0051301	cell division	Biological Process
GO:0006520	amino acid metabolic process	Biological Process

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminal
IPR047240	Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domain
IPR047242	Pre-mRNA splicing factor component CDC5L/Cef1
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A1S2XUJ0	_

SwissProt

SwissProt term	Description
CDC5L_ARATH	Cell division cycle 5-like protein

KEGG

KO	Description	Enzyme
K12860	pre-mRNA-splicing factor CDC5/CEF1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G09770	cell division cycle 5
Medicago sativa L.	MsG0780041667.01.T01	_
Oryza sativa L.	LOC_Os04g28090.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa010981	_
Glycyrrhiza uralensis Fisch.	Glyur000142s00009132.1	_
Codonopsis lanceolata	Cl_chr02_60500T	_
Arachis hypogaea L.	AH12G19610.2	Cell division cycle 5-like protein like

Expression pattern