| Gene ID | Annotation |
|---|---|
| Am09G021160.1 | pentatricopeptide (PPR) repeat-containing protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G021160.1 | mRNA | Chr09 | 72153176 | 72155086 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 24 | 71 | 3.90E-59 |
| PF13041.9 | PPR_2 | 124 | 173 | 3.90E-59 |
| PF13041.9 | PPR_2 | 226 | 272 | 3.90E-59 |
| PF13041.9 | PPR_2 | 329 | 377 | 3.90E-59 |
| PF01535.23 | PPR | 229 | 259 | 4.50E-50 |
| PF01535.23 | PPR | 332 | 362 | 4.50E-50 |
| PF14432.9 | DYW_deaminase | 545 | 636 | 4.80E-36 |
| PF20431.1 | E_motif | 447 | 509 | 3.40E-15 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0009451 | RNA modification | Biological Process |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0003723 | RNA binding | Molecular Function |
| GO:0005737 | cytoplasm | Cellular Component |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XTZ9 | _ |
| SwissProt term | Description |
|---|---|
| PP168_ARATH | Pentatricopeptide repeat-containing protein At2g22070 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G22070 | pentatricopeptide (PPR) repeat-containing protein |
| Medicago sativa L. | MsG0180005604.01.T01 | _ |
| Oryza sativa L. | LOC_Os10g34720.1 | LOI1, putative, expressed |
| Cucumis sativus L. | Csa001669 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000447s00016629.1 | _ |
| Codonopsis lanceolata | Cl_chr07_10770T | _ |
| Arachis hypogaea L. | AH06G05600.1 | Pentatricopeptide repeat-containing protein At3g49170, chloroplastic like |