Gene detail

Detail information of Am09G021150.1 Annotation

Gene ID	Annotation
Am09G021150.1	phytochrome interacting factor 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G021150.1	mRNA	Chr09	72149375	72152188	-

Sequences

CDS:

>Am09G021150.1
ATGTCTAAAGGGAAAGTTGATCACAAAGAAATGATGAAAAACGCTTATGCAGCTACTGATCAATCTTCCACTTCTAACAATGTACCCCTTGTGGGATTGGATTGTATGCAGACCCAAGAATTGTTTGAGCCGGTTTGGGAAAATGGCCAGATTTTAATGCAGGCTCAGTCCAGTTCCAGTAGAGCTAAAAAAAACCCTACTTTTATGACGTTTCCATCTTACACTCCCATGAGTCAAGAAAAAGTTTCAGAATATGGTAAAGAAACCAATACAAGAATGGGAAAGTTTGAGGATTTAGATGCTGGGTTGAATGAAATTTCAAGACCAGTCCCTTCTGGTGAAGTGGGTTTAACTCAAGAGGAAGACTTGATGATGATGCCTTGGCTGAACTGTATTCATGGAATGGATGACTCTTTGCAACATCAGTATAGTCCTGGTTTGTTACATGAACTCTCTGGGTCTGGGATCACAATGAATGAAATTTCTTTACTGGATAGAAGAAGTTCAAGTAATTATAATCAGGTATTTAGGGACTCTCATAAACACTATTCACGCCGTGTTTTAAGTTCACAACAAGGAATCCTTTCCAATGGTTATTCAGCAACAGCTAAACAAGTTGACACCTCTGGCTCTGGACTTAAAGCTAACAATTGTCAGTTATATATTCCATCAATGTTGCCTCAATCTGAACCCTCATCTGCATCTATTAGATCTAGAGAATCAAATATAGCTGAAAATAATACAAGTAATACAATCCAGCATGCACCTTGTGGGGTAATCTCACATATTCCACCTAAATCCACAACCATTTCACCTCAATGTGGAAAACCTGTTGCTATTGTGAAAGCTAATCTTCAGAACATTGGTTTGTCTTCTTTGAGGTCAGAAAGTGTGGGAATAAAGAATAAAGGTGCTGCTCCTGCAAGTGGAAGCAATCCTCCAGAATCAACACAAGTTGATTTAAGTGGAGAATGTCCAAAAAAATCAGCCATGCATAGTCAGAAGGCTATGGAGCCATGCAAGGTTACTTGGAAACCTTTGGAGCCAAAATTTATTGATTTGGATGCTGCTGTTTCTACACCTGCTTGCAAAGATGTGTCCAAGGTTGATCAACTTTCCAATCAAGTTCTTTGTGAAAGTAATATAAATGGTCAAGAAGCTGTTAAAAAATGTATGGAGCCAGTAGTAGTCTCTTCCTCTGTTTGCTCTGGCAATGGTGCGGAGAGAGTTTCAGAATACCCAAATAACAGTTTCAAGCGAAAAAGTCAAGACACTGAGAATTCTGAGTTCAACAGTGAAGATATTGAGGATGAACTCGTGGGTATTAAAAAGGAAGCCTATGCACGAGGTGGCATGGGCTCCAAAAAAAGGCACCGTTCAGCTGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGCACATTACAAGAACTCATACCGAATTGCAATAAGGCAGATAAAGCTTCAATGGTAGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCATCTGCAAATTATGTCAATGGGAGGTGGTTTATATATGCCTGGGATGATGTTACCAGCGGGAATGCAGCATATGCATGCAGCACACATGTCTCCCTTTTCACCTATTGGCATTGGCATGCAAATGGGGTTGGGGTTGGGGTTGGGTTATGGTAGTATGGGCATGCCTGACGTTAATAATGGATCTTCTTCTTCGAGATTTCCAATGGTTCAGATGCCCCAAATGCAAGGAAGTCATGTTTCTGTTGCACTTGCACATACATCTGGACCTGCTTCTTTTCATGGGATGGCAGGACCAAATCCTCAAATGTTTGGGCTCTCCATGCCAATGCCATGTGCTCCAATGTCAATGTTTTCTTTTCCTGGAGTCTCTCTTATGAATCCATCAGCTGCAGGACTTAAGGAAACCGATCCAATGCCAACCGGTGGATTTGAACAGTCAACTTTGGTACCCGGTAAAGAAGATAACCTCTGTCATATTGGAACAACAACAATTGAATGTTCGGTCATGATTGATGTTCCCAGTTGA

Protein:

Promoter(3k):

>AM09G021150.1
CTTTTTGAGATTTAGTATTTGCATTTTTTGAGAGAATTAGCACGATGGTTTATCTTATTACTTCATGCTCACCCACTCTCTTGTGTCTGCAACAGGATTATTATGAAACTTCTATTAAACCTTGGAAGAAGCTATGGATACCATCATTCCTCATCATCCCCTCACCCCAACAACGTTGTTACTTGGACAACCCTCATCACCCAACTCTCCCATCTCAACAAACCCTGTCAAGCCTTCTCCCATTTTAACCGCATGAGAAACACTGGTATCTACCCAAACCAATTCACCTTCTCAGCTATACTACCCGCATGTGCCCATTCTAATCTCCTTTCCCATGGTCAACAATTGCACGCTTTGGTTTATAAACATGGCTTTCAAACTGAAACGTTTGTAGCTACCGCGTTACTTGACATGTACGCTAAGTGTTCACACATGTTTTTGGCAGAGAAGGTGTTTGATGAAATGTCCCATAGAAACATTGTTTCTTGGAATGCTATGATTGTTGGGTTTGTGAAAAATAAGTTGTATGGTAGTGCTATTGGACTATTCAGGGAGGTTCTCCGCTATGGTTCCCTTGGTCCCGATCAAGTGACTTTTTCGAGTGTGTTGAGTGCTTGTGCTGGTGTTGTTGATTTAAATTTTGGGATGCAGGTGCATGGAAATGTCGTTAAGATTGGCTTGATTGCGTTGGTTTATGTGAACAACTCTCTTGCTGACATGTACTGCAAATGTGGGTTGTTTGATTATGCAACCAAGTTGTTCTATGCTGCTGGAGATAGGGATGTGGTTACGTGGAATGTGATGATAATGTCATGTATCCATAGCAAAAACTTTGAACAAGCTAGAAGCTTTTTTCATGACATGAAAATGGAAGGCATAGCACCTGATGCAGCTTCATACTCTTCCCTCCTCCATGCTTCTGCAAGTGTTGCAGCTTTGACACAAGGCACCTTGATCCATACCCACGTCTTAAAAACCGGGCATATGAAAAACGCTTGTGTTTCGAGCTCATTGGTGACAATGTATGGTAAATGTGGGAACTTGTTTGATGCTTATAGGGTCTTCCAAGAAACTGAAGTTCGTCATCGTAATGTGGTTTGTTGGACGGCCATGATTGCAGTTTGCCACCAACATGGTTGTGCAGATGAAGCAATTGAGTTATTTGAGGAGATGCTCAATGAGGGTGTTGTGCCAGAAGACATAACTTTTGTTTCTGTGCTGTCCGCATGCAGCCATACAGGGAAGGTTGATGATGGTTTTAAGTACTTCAATTCCATGGAAAACATCCATAACATTAAACGTGGACCTGAACATTATGCTTGCATGGTTGACTTGCTTGGTCGTGTTGGTAGATTGCAGGAAGCATGGAATTTTATTGAATCGATGCCAATCAAGCCCGATTCATCAGTTTGGGGGGCTTTGCTTGGGGCGTGTGGAAAATATGGCCATGTTGAAATGGGTAGAAAGGTTGCAGAGAGGCTTTTCAAGTTAGAACCAGATAATCCAGGGAACTATATACTGCTTTCTAATATATATACAAGACATGGGATGTTGGATAAAGCTGATGAAGTCAGGCGATTGATGGGGATTAATAGGGTAAGGAAAGAGATTGGGTGTAGCTGGATTGATGTTAAGAATAGAACCTTTGTATTCACTGTGAATGATAGGTCACATTCTAGGACACATGAGATTCATGAAATGTTGGAAAAGTTGAAGGAGTTGATAAAGAAGAGAGGATATGTTGCTGAGACACAATTTGTAACTAACATTGTAGAAGGGTCTGAAGAGAAGAGTTTGTGGTATCACAGTGAGAAACTAGTCCTTGCATTTGGTCTTCTGGTCCTCCCAGCTGGATCCCCGATAAGGATAAAGAAAAATTTGAGGACTTGTGGTGATTGTCATACTGTTATGAAATTTGCTTCAGAGATTTTTCAAAGAGAGATTATTGTGAGAGATATCAACAGGTTTCATCGATTCACAAATGGCCTATGCTCTTGTAGAGATTATTGGTGATCGAAACACATGTAACAAAATGAACACAACTGCTCATAAATTATTTGTTTGGCATCACACAAGTTGAAGATAGACTTGAGATTATACCTTTTTCACAGTGAATCGGAACTCCCAGTTAACCAATGTGTTTTGCTGTATGTGTGTGGACTCTTCCCCACCAGTTACTTGATTAACCATGGTTGAAATCAATCCCGGAGTCTATTCTCTATCTCTTTCTTCTGACACGACATCTAATTCTGTTTACTTTCTTCTGCAACAATTTCACTGCCTTCTGCGTCCATTCCGATTTCTGAAATTTTGAGGTTTCTCTGTGTTCAGACAGAGCCAACACACATAGGCTCCGAAGGTTACTTTTATTAAATCCGAGCATGGAACATCGAATGCATGATCACTCCAAAACCATTACTATAATATAAATTATTGTATGTACTATTACACAAGCAACTTAGATTATGAAAAATTGTCGGTCTCGAAATTTCGTTCCTTTTTTTTTGGGTTCCCCGTTGAATGTTTTACGCCTTATGGCTAGTCTACTGGTATCAAGAAGCTTCAACTGTAATTAGAGTTAGAGAACCAGTGTTTTTTTTGTTGACAGAGAGAATCAATGTTGTTGTTAACTTAATATTACTACTAATTTTGTATTGAAGTACTAGTACTTTCCTAAAAAGGAGGATTAAGGATTTTTGTTTTATTATTATAAAGAGAGAGATTTATGTTGTCGGAAATTATTATTTATTATTGTTCCTTTGTTTCTTCTCCCATATCATTCATTTCAAACAGGGGTTGGTTTGTCTCGTAGTGTGTTAGTGGGCCTCGCGTCAGGATAGGCTACATTGTTTGCTGTCATCAACATAGTATTTATGTCGGAAGCAACATCAATGGCTTAAGTTTCTGTGTTCATTCATTTCATACGAATGCTTCTTCCTTTCCTTATTACTCCACCGCCTTCGATTCAGTTTCATAATATCTCTGCATGAGTTACACAGC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00010.29	HLH	463	509	2.80E-13

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Gene Ontology

GO term	Description	Category
GO:0046983	protein dimerization activity	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process

InterPro

InterPro term	Description
IPR044273	Transcription factor PIF3-like
IPR047265	Transcription factor PIF1-like, basic helix-loop-helix domain
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638	Helix-loop-helix DNA-binding domain superfamily

trEMBL

trEMBL term	Description
G7KVK4	_

SwissProt

SwissProt term	Description
PIF3_ARATH	Transcription factor PIF3

KEGG

KO	Description	Enzyme
K12126	phytochrome-interacting factor 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G09530	phytochrome interacting factor 3
Medicago sativa L.	MsG0780041453.01.T01	_
Oryza sativa L.	LOC_Os05g04740.1	helix-loop-helix DNA-binding domain containing protein, expressed
Cucumis sativus L.	Csa013830	_
Glycyrrhiza uralensis Fisch.	Glyur000447s00016634.1	_
Codonopsis lanceolata	Cl_chr05_22720T	_
Arachis hypogaea L.	AH06G05590.1	Transcription factor PIF3 like

Expression pattern