Gene detail

Detail information of Am09G021060.1 Annotation

Gene ID	Annotation
Am09G021060.1	DEAD box RNA helicase (RH3)

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G021060.1	mRNA	Chr09	71956004	71962823	-

Sequences

CDS:

>Am09G021060.1
ATGTCTTCCATAATTTCCTCCGTACACCAAGTTCCCTCTCTTGAACTATTCAAGAAGCAGAAGCCAACCACCATTTCTACTCCATCCATTAGATTACACTGTTTAGACACCACCAAATTCCGCAATAACAACCTCCTCAAAACTAACCGTCACTTCAACTTCAATAGATTTGTTCCTTCCGCTGTTGCCACTCCCAATTCTTCTTCCTCTTCCCTCCTCAGTCAAGAAGCTTTCAAAGGATTAGGCTCTGGCTTCGACGACGATGAAGATTTCGCCTCCGTAACTTCTTCTGTTAGCGCAGATGAACTTGACATTTCCAAACTCGATTTGCCCTCGCAACTTGTCGATTCACTTCGCAAGCGTGGGATTACTCATCTTTTCCCAATTCAGAGAGCCGTGTTAATACCTGCACTAGAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGGACCGGGAAGACATTGGCATTTGGAATTCCAATTATTAATGGACTCAATGATGACGATGATGAAGCAGGTTCTTTCGGTCGCAGGCGTCTTCCTAGAGCTTTGGTTCTAGCACCTACTAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCCCCTTATCTCAAAACCGTTTGTGTTTATGGTGGTGTTTCTTATGTTACCCAGCAGAGTGCGCTTTCGCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGGCTAATTGACCTCATAAATGGGAACACCCTTAAGCTGAGCGAAGTTGAGTATTTGGTTCTCGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAACGATTTTGGAAACACTCCCATCTCAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCCACTTGGGTGAAGAAGTTGGCAAGGAAATATTTGAACAATCCCTTAACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTAGCTGAAGGGATAAAACTTTATGCTATATCAGCCACTTCCACTTCAAAACGAACAATTCTTTCTGATCTTATAACTGTGTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAGAGAGATGCTGATGAAGTATCATTGGCGTTAACTAATAGTATAACTTCTGAAGCTTTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGCTTTAGGCAAGGAAAGTTCACAGTGCTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCAGAGACTTTTGTACATCGCTCTGGCCGTACTGGTCGTGCTGGAAAACTAGGTACTGCCATTCTGATGTACACCGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTGAATTTGTGGGCCCACCATCTGTGGAAGATGTTTTGGAGGCATCTGCTGAGCAAGTTGTTGCCACACTTAACGGAGTTCATCCCGAGTCTATTACATTCTTCACCCCAACTGCACAAAAGCTTATTGAAGAGCAGGGAACAAATGCCCTTGCAGCTGCTCTGGCACAACTGAGTGGATTCTCCCGACCTCCGTCTTCCCGGTCTCTTCTCACCCATGAACAGGGATGGATTACATTGCAACTGACTCGAGATTCAGAAAATTCTAGAAGATATTTTTCAGCTAGAGCAGTCACGGGGCTTCTTTCTGATGTATATTCTGAAGCTGCTGATGAAGTTGGAAAAATACAGTTAATTGCTGATGAAATGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTGCTTAACAAGGGTTTACCACCTGGGCACACTATTTCCAAAGTCACCAAGTTACCTCCTTTGCAAGATGATGAACCTGCGGGTGATTTCTATGGGAAGTTTTCTGATCGAAGTAACCGAAGAAATACCAGGGATGGAAGAGGTTTTAGATCCTCACGGGGATGGGATGGAGGCCGGAGCTCGGGCTCAGGCTCGGATGATAGGTTTGGTGACCCGTTTAAGAGAGGTGGTAGAAATTATAAAGCCAGTAGTGGCAGTGGCAGCAGCTGGTCTTCAGCAGAAAAAAGCAGTCGCGATGATTGGCTAATTGGAGGCCGAAGATCAAGCAGGCCTTCATCATCAGACAGAAGCTTTGGAGGTGCCTGTTTTAATTGTGGGGAATCTGGGCATCGAGCGTCAGATTGTCCAAACAAGCGAGGCTTCTAA

Protein:

Promoter(3k):

>AM09G021060.1
TTTAACTTTTAGTTAGATAAATCTGTAGTCCCAAAACAATACAAAACGGATTTATCTGTTTAGTAGATAACATCCTTTAGAAGATTATCACTAAAGGATTTGGTATTTTTGATATTTTTGAAAATCGGATTTGTCTATAAATCAATAAATCCGTTTTGGTATTTTTGAAAATCGGATTTGTCTATTCTTGAATTAAATCCGTTATGTATTTGGTTTCTAAATCAGATTTATCTTTTAGTTAGATAAATCCTTTAATGTAAAATACATTCTAAATTATCATTTGCATTTGTAGGTGCTTCTCTAGCTTTCCTCTTCTTTTGAGGACTGGAACCTTCCACGGTTTCCAAATTAATAGTTGGCGGTTCAGTTGTTGGCATGAGTGATGGGCTATTTTCAGCCTCCAAATGACATAAAACAGAACATTAGATAAAGTAAGAATGACAATATATTCTAAAATACTATTCAGAATCATCAAATTGTGATAGAGGAGCAATTACCTGATTTTCGATCACGGAAACATCAGGGGCAGCAATAGAGTTTACTTCAGTATCAACTGTCATGTCTAAAATTTAAAATAAAAGATAGACTCAATAAAACGAAGGCAAAACAAATACAGAAACGAAACTGATAATAAAACGAAGGCATAAGCGAAACTGATAATACAGAAACAAAACTGATAAAGAATACAAAAACGAAGGCAGAAACGAAATCAATAAAGGTTATCAACTGTCAAACTTTAATAAAACGAAGGCATAATCAAAATCAATAAAACGAATGCATAATCAAAATCAATAAAACGAAGGCAAAAACAAAATCAGAAAAACGAAGGTAAAACGTGTGTGTGATTATGTGATACTTCTACAGAAAACGTGTGTGTGATGATACATTGATACAACATTCAGAAACGAAGGCAAAATCGAAATCAATAAAACGAAGAAAAAATCGAACTTGTGGCTGTGACTCTGTGAGAGACTGCGAGAACTGAGAGAGTTGTGAGCGTGAGAACTGAGAAGTGCGAAAACTGAGAGAGACCGTGCGATAGGGTTTGCGTGACTGAACGTGAGTGAGAACTGAGAGATCTGTGTTTCTATTTTCGGTTTTTTGCGGTTTTCGGTTTGGTTTGGTTTGCAGTTTTCTATTGGTTTGGTTCTGTTTTGAACACCCCTAGATGCTAGACTTTATTAAAATTCACCACATCTTCAATGTTAATGCATGAATCTACCGAAAACCCAATTTCATTCAAGAGTTTTTTCAGGTCAACAACTTTGTTTCCGTCGTTGACCTCATAATCATTGTGAGAGATGAATCGTGGTGGGTCTAACAAGTCTTCAAGAATGAAAAGGGACACATCCTCAAAGTTATCATCGATGCCCAAATCAAATGAGGGACCATTAAAGGACTGTTGTGGGGCTACCATCTTTTCATGCGTATAAGGAGACAAAGGAAGAAGACTTGTGTGCTAAAAAAATGAAAAAGATGTCTATTGTTTTATTTTTTCCGATTGTTCCACTGCCCCTTACGCTCTTTCTAGAACCATTCAGAACATGGTATGGAATCACTCCTCTATATTATTCATTTTTTTTATTCGTCGTCTGAGTGCAGCGTTATTATTGTTCGTCGTCTTGGTGCGGCGTGTTTGATTTTCCGTCTTTTTGCAGTGTTCATTAGATTTAGATTGACTGATCAATTTCAGATTCAACCAATGACTAGAGACTCAAAGTTACAGTTCTGGAAACCTGGGTAGTTGGGGTACTCACGTGACTTTTATTTTGTCACATTTGTAGGCATTTTTCCGTTTTACGCTATTAACTTGTGTACAGTGAGTTTGTTTGCAAATTCATCATTTGTGTTTTTAGCAATACTGAATTTGTATTATCATCGATGTAATCTATCAAATTGAATAAATATCATTTTTTAGAAAAAAATCATAATAGAACGGTAAACCTAATTAATGTTTTGTAATTTAAGTTATTGATAATGTGATAGAGTATTTTTTTTTGGTAAGAGTAGGAAAAAGAAAAAGAAGTGATAGAGTATTTTTTTTTTTCGATAAGCAAAAATTTCATTGAATAGAGCAGTAGGTGTACTCAAAACCAAACCAACAGGACTATCTCAAGAATTGTTTATACACGTAAGAGCATTAAGCCACCAAGAAGGATGAGGACAACTAGTGTTTTTACTCACTCTATAAATATACCAACTCCAAGACAAAAACTTAATACGAGCAACAATAGAATCTATCTTAGCTTCTTCCCCTCTAAATAAGAGTCCATTCCGTCCTAACCAAATACATCAGCAAATTGCCAACCACAACAAATATCTTATCTTTCGAGCCTTCTTTCCCTTAAATAACTCGCCAAAACTCACCATGTGTTGCACTAAATCGGTCGACTTAGGCAACTGAATATCCAACCATCTACCAATTTGCGACCTGACCTGAACTGAGACATTACATTGAAAGAACAAATGTTGCAAAGTTTCCCGATCAGACCTACACAAAACGCATTCAGCAGTTTCCTCGGCCAAAATACATGACGCGCCTAAGCAACGTATCACGAATTGGAAGCGAATTGGTGAGTATTCTCCAACCGAAAATAACAATTTTTGAAGGGGTAGAAGTCTTCCATAAACCAATCAAAACTGAGCTAAAACACCATCAGCATTCATTACCCGGAGGAATGTTGACAATGTGATTATAACATCAACCAACCGTAAAGGATCTATCGACCAAATTTCCTTCTAAAAAGCTATCGACCAAATTCAAAAAAAAATCTATTGACCAAATTTATTTTACTGAATCCGACGCTAGCAAGACCCGATTAGAGTAAACCCGAACCGAGTAGAAATATCTGCATTATTATCTTCACTAAACACCAGAGAGCGAGTTGGAGGTTTAAGAGGCCATACATTCTCCAACAAAACCTCCGTCCCTTGCCTTTTCCCTTATCTTCATCTCTTTCCCTCATTTCTTCTTCTCTTCTTCGAAGAAGAACTACAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	127	300	1.10E-48
PF00271.34	Helicase_C	337	445	9.10E-32
PF08152.15	GUCT	532	632	1.80E-19
PF00098.26	zf-CCHC	731	747	2.10E-07

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009658	chloroplast organization	Biological Process
GO:0009651	response to salt stress	Biological Process
GO:0005829	cytosol	Cellular Component
GO:0042254	ribosome biogenesis	Biological Process
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR036875	Zinc finger, CCHC-type superfamily
IPR001878	Zinc finger, CCHC-type
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR012562	GUCT
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
Q2HUZ8	_

SwissProt

SwissProt term	Description
RH3B_MAIZE	DEAD-box ATP-dependent RNA helicase 3B, chloroplastic

KEGG

KO	Description	Enzyme
K16911	ATP-dependent RNA helicase DDX21	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G26742	DEAD box RNA helicase (RH3)
Medicago sativa L.	MsG0180004714.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa001546	_
Glycyrrhiza uralensis Fisch.	Glyur000447s00016650.1	_
Codonopsis lanceolata	Cl_chr05_23330T	_
Arachis hypogaea L.	AH17G03640.1	DEAD-box ATP-dependent RNA helicase 9 like

Expression pattern