Gene detail

Detail information of Am09G020400.1 Annotation

Gene ID	Annotation
Am09G020400.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G020400.1	mRNA	Chr09	70439022	70444339	+

Sequences

CDS:

>Am09G020400.1
ATGTCGAAGAGGAAGTTTGGCTTCGAAGGTTTCGGCATAAACCGTCAATCAACCTATAGTTTCGAACGATCTCCAGCTCCTCAGCGACTGTACGTCCCCCCATCGTCGCGTCAAGGCCACGATAACTACGAAGACACCGACCTCGACAACATCGATTACGACGACAACGAGGATTCCAGAAACGAAGCGATTAACACCAACGACGATGATGACAACAACGACAACAATAACAACAAGGGCGGTGACGAGGAGGAGGAAATCGATCCCCTGGATGCGTTTATGGAAGGGATACATGAGGAAATGAAGGCGGCGCCGCCTCCGAAGCCGAAAGAGAAGGTGGAGGACAGGTTCAACGACGACGAGGAAGACGATCCCATGGAGAGTTTTTTGAGGGCGAAAAAGGATTTAGGGTTGACGCTGGCGTCGGAGGCTTTGCACGCTGGATACGATTCTGATGAGGAGGTTTATGCTGCTGCTAAGGCTGTGGATGCTGGTTTGATAGAGTATGATTCCGATGATAACCCTATTGTTCTTGACAAGAAGAAAATTGAGCCCATACCTGCTCTTGATCACACTTCTATTGATTACGAACCCTTTACTAAAGATTTTTATGAAGAAACTCCTTCAATATCAGGTATGAGTGAGCAAGATGTAACTGACTATCGGAAGAGTTTGGCTATTCGAGTATCGGGTTTTGATGTTCCCAAGCCAATAAAAACATTTGAGGACTGTGGGTTTGCTCCACAAATTATGAATGCTATAAAGAAACAGGGTTATGAGAAGCCCACGTCTATACAGTGTCAAGCTTTACCGGTTGTGCTTTCTGGTAGTGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATTATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTGATATGTGCACCTACCAGAGAATTAGCACATCAGATATATCTTGAAGCCAAGAAATTTGCAAAAGCATATGGTATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGCTGTGAGATTGTTGTTGCCACCCCGGGAAGGTTGATAGACATGCTAAAAATGAAGGCCTTGACAATGCTAAGAGCAACTTACCTGGTGCTTGACGAGGCTGATCGAATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCTATTGTTGGTCAGATTAGACCGGACCGCCAAACTTTACTCTTCTCTGCAACAATGCCTCGTAAAGTCGAAAAGTTGGCTAGGGAAATCCTGACAGATCCTATCAGAGTGATAGTTGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAGTCCCTTCCGATTCTGAGAAATTGCCATGGCTTTTGGAGAAGCTGCCTGAAATGATTGATCAAGGTGATACGTTAGTTTTTGCTTCCAAGAAGGCCACCGTGGATGAAATTGAATCACAGTTGTCTCAGAGAGGCTTCAAAGTTGCTGCCCTCCATGGTGATAAGGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCACCTATCACGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAAACGGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTACATCGCATTGGAAGAACAGGCCGTGCCGGTGACAAGGATGGAGTTGCACACACCCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCACGGAATTGATGGATCTTGCTATGAAGGATGGGAGATTCAGATCCAAACGTGATGCAAGAAAAGGAGGTGGTAGAAAAGGCAAAGGTAGAGGTGGTGGTGGGGGTGGGAGAGGCGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAGTGCAGAGCCAAGCAATCCATCATCTAACACAGTTCCAAATCGATCTGCCACTGTAAATTCTCTGCGAACAGGAATGATGTCACAATTCAAGAGTAGCTTTGTTGCTGCTTCGCCAAGCTCTCAAAATCAAGGATTCAGTGGTAATACAAGCATTGCTGCTAATAAGAGACCAACACTCTCTGGCTTTGTATCTGGTGGATCAATTGGCGGTGATATAAGTAAACATCACCAGCCTGCTTCTCAAAACCAAGGATTTGGTTATAATACAAACATAGCTGCTAATACGAGACCGACACTTGCTGGCTTTGTATCTGGTGGATCTATTGGTGGTGATATAAATACTCATCAGCAGACTGCTTCATACAATCCTGCTACTTCAACCGTAAACTCCACTAGTCAAAGTTCTGGAGTAAATCCTGCTCAGAATACCACAAACAGCAGTTCTAAACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATCGATAG

Protein:

Promoter(3k):

>AM09G020400.1
AACGCAGAAACAGAAACATAAAACAATCAAAATTAACGGAGGAAAGTGAGGGAGGGAGTACCTAGGTGCGAAACTGACGTTGGAAAATCGAAATCAACGATTGGGAGGGAGAGGGAGGCGGAGTACTCTAGGTTGGGGTGTGAGAGGAGGTGTGAGGGAGGGAGAGGGAGAAATAGTGTTTTTTAGTGAGGGATATTTTGGGAATTAAATGAGTTAGGAGGTATGGGGTGAGTAGGGAGGGGTGTGGGAAAAGTAATGGCCGGATAATATGAATAAGGGAATAAGTGGACCCACTTCCCCTCCAGTCACTTCCCCTCCAGTCACTCCATTCGACTGCTTCAGAGCCGTTCGATTAAGATCGGACGGTACCGATTTCAAAGTCATATTTTTTATTAAATAAAATGGAAAAACTGTTTTTGAAATCTGTACCGTCCGATCTTAATCGGACGGCTCTGAAGCAGTCGAATGGAGTGACTGGAGGGGAAGTGACTGGAGACGATCCGGGTCTGGAATAAGTCTACCATATATTCCAAAACCCAAAAAAAGTAAAGAAACACGTGTTTGTCGTGTTATTGGAAGGAAAAATCATCAATGTAGCCCATGTGGGAAGGGAAATAGTGATGTGAATACAACCTCGAGAAAATCTAAGCATAGTGCTGTAGAGAAAAAGAAATTATTAAAAATCTCAAGTTAGGGTTTTCACGTGAACTTAGGAGGAACACATATCAATCATATATGGTATGTGAAGAAATTACAATATGATCTAGCGAGTCTTGTCTAAGTTAAGCAAGTGTCACGTAAAAAAGGAAACATGTTAAGCTAACTAAATTTTTTGTAGATAATCATGATGATCACATAAGAGGGACAATCATGATAATTATATATAAAACCCCTGAAGATGCAAATTTCAAGTCTTGATCTCCCCCTATGGAAATCTATTGTCCCTTCGAAGGTTGTAGTTTTCGGGTGGAGGTTACTGTTAGATTCCTTACCAGTGCGTGAGCAGCTGTTGCACAGGAACGTCATCCACTCCGGGCTAGAAGTTGGTTGTTCGTTTTGTAATTCCTCTCGCGAGTCTGTCGAACATCTTTTCATCACTTGTGGTTTTGCGCGTTCTGTTTGGCATATTGTTGGTACTTGGCTAGGTGTTGACGTGGATGTCTCTCTGAGTGTGGAGGATTTCTTTAGTAATTGTGGCCAGTGGTGTACAGGGAAGAAAGCAAAGCGGGTGAAACATCTCTTCTGGTTAACTACTTGTTGGAGCATTTGGCTAGCTAGGAACGGAGTCATATTCAAAGAGGAGGAACCAAATATAGAGGGGGTTGTTAACCGGATCAAGAACTTATCTTAGAGTTGGTGTCTTTATAAACTCAATTGTAATTCATCTTTGTCTGTATCTCTATGGTGGTCTAACCCACTTACATTCCTTAACAATCTGTAATCTAGTAGGGGAAAAACAGTGGGCTAGGTTGTTGTTTCCCACTGTGGTGCAGGTTGTACGAGGTACTCTTTTTCCTTCCTGAGTCTTTTTCCCATTGCGTTTTGGCTCAGTGAGGTTTTAAGGAGGCCCTCCCCCTTTCCTATATCTCCATTGTAAGGGTTGAGCACCCCTTGCGCTCCCTTCAATGAATTTTTTGCTTATCTAAAAAAAAACTACTCTTCATTTTCCTTTTAATTCAACTTATTCTGCTATAAACCAGGTATCCTGCAAAAATTCACCCTTCGTGTCGGGTAGGATCATCACAATGTGCGACAAAATTCTCTCTCATGAGTTTTAACTCTGCTGCATTCAAAAATTTGAATTCGAACCCCGGAATTTTACTTAATTTTTTTTAGAGCCGTTAGTTAAACTTTTGTCATTTACTTTGGTTTTTCCTCATTCATATTCATTTTTACTGTATCCACACATTTATTAGGGATGAATTAAGTTTAGGACAATCCATCTGAAGCCTACTATTATACTTTTTGTTTTGCTCTCAACAGGTCCAATTTATCTCTCCCTTAAAATACAACAAGAGTGTCTATTTAGTTTGAGAATTTTTTCTTCTTTTTTGTGAATTTTATTTTTAATTGTAAAATTGTCTGTTTTTTCAGTTATTTCAATTTAAATTAAAAATCGAAAGAGTGAAGATTGGGAGAACCATTTTATTATTTAAATAAAAAATAGAAGGAGAAATTACACTAACTCCCCTGAGATGTGATTAGATGACATAGACACTCCCTCCATTAAGCTTTATTTAAAAAAAAAAACACATCCCCTTTGTATCCTCTATTTTTACTTAGGCTTTGTTTGCCAAAAAAAATAGCAAAATAGTGGATAAACTAGTAGATAGCAGATAAGCTAGCTTATAGCTGATGAACTGTTAGCGGATAAGCTACAAAATTGAATTTAAATTGTTTGGTAAAATTAGCGGTTGAAGTAGCTAATAAATATAAAATTACGTAAATAGACATTTGTAATTAATGCTTAAAAATGAGAGAGAAATTCATTTAATGGAGGATAAATGAGAAATTTAGTTAAAGTAACGAGGATAAAATTGAGAGAAAAAATAAAACGCTATAGCTCAAAAATTACTATATAAGCTAGTAAAAAACGCTAAAAGCTAATAGTAAACCGTTTCAACGAGCTGATTTGCTATAAACTAACGGATAAGGGAGGTGAGTGTAATTTCGCAAAAATAAAAATAAAAAGTTTTCTGAAACTTTGTTAATGGGCTTTCTCATTCAGTTCGGGCACCCGCCCGCCCAACTAAAAATACAAGTTCCCGTCACCTTCATCCTTTAACACGAAACAAGAAAAGAAATTGTCCGCGGTGGTGCGCTGATTCACTGCTCGCAACGTTCCAGACGCAGAAGCGTCGAATTACAGTAGTTATAGCTCAAACACTCATCCCTTATTTTTGCTAAATCAATTTCCCCAAATTCCGTTAATTCACTTTCCTCCACACAACTTCCTTCCATTCCACTTCGCGCAAGCTCAATTAGGGTTTTCTACCAGAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	263	434	1.90E-50
PF00271.34	Helicase_C	474	579	1.20E-30

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0009536	plastid	Cellular Component
GO:0016787	hydrolase activity	Molecular Function
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site

trEMBL

trEMBL term	Description
A0AAN9P4I8	_

SwissProt

SwissProt term	Description
RH24_ARATH	DEAD-box ATP-dependent RNA helicase 24

KEGG

KO	Description	Enzyme
K12835	ATP-dependent RNA helicase DDX42	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G47330	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Medicago sativa L.	MsG0780041370.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa002814	_
Glycyrrhiza uralensis Fisch.	Glyur000049s00003152.1	_
Codonopsis lanceolata	Cl_chr06_38040T	_
Arachis hypogaea L.	AH06G04560.1	DEAD-box ATP-dependent RNA helicase 24 like

Expression pattern