Gene detail

Detail information of Am09G020150.1 Annotation

Gene ID	Annotation
Am09G020150.1	nuclear RNA polymerase A1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G020150.1	mRNA	Chr09	69930685	69954593	+

Sequences

CDS:

>Am09G020150.1
ATGGTTCTCGCCATTGAGGGCGCAACGAATTCCGTTGAGTCGGTGGCTTTTAGTTTCATGACTGACGAAGAGCTACTTAAAAGTAGCCGTGTTAAAGCAACCAATCCCATTCTTTTCGATGGTCTCTCTAGACCTGTACCTGCTGGGTTATATGATCCTGCTTTTGGTCCGCTAGATGAAAAGTCTCCATGTAAATCTTGTGGCCAAACCTCTAAGCATTGCCCGGGTCATTTTGGGCACATCGAGCTTGTTTCCCCTATCTACAACCCTTTGATGTTCAATATTCTTAGTAACCTTCTACAAAAAACTTGTTTCAATTGCCATCATTTTCGATGTAGCAGACGTGAGGTCGAGCTGCGCACGACCCAGTTGGAGCTCATTAAGAAAGGGAATATTGCCAAGGCCAAAAATTTGGATTCACTTAAGCCAGATGAATCCATACATGAATCCATACATTCAGATGATGGTGACGATGACCAATGTTGTAATGCTGAGAAACCAGGAGAAAACTGGACCTCCCTTCAATTCAGCGAGGCGATGTCTGTTCTAAGGAAGTTTATAACGAAGAGTCAAAGGAAGTGTGCAAATTGCGGAATCAACAATCCCAAAATCACCAAACCAATCTTTGGATGGTTTCACGTGAAATCTCTCTCTGCTTCTCAAGCTAGAGCAAATGTTATTAGTGGTGAAGTTGCACCCTTGGCAAGTGAAACAATCGATGATGATATATCTTTAGGAATTGGGGATACTACAGATGAAGAGAATGTTGCCTCTGCCAGTAAAGCAACTAGTGATGCAAAAAGGCATAAGAAAACGAATCGAAATTTGTCCTACAAGCTAGCTGAGAAAAATGCACTTGATGGATCTTTGCTGCCATCCCAGGTTAAAGGTATTTTAGAGCTTTTGTGGGAAAATGAGGCTCGCTTGTGCTCATTTATTAGTGACATGCAAGATCAAGGTTTGGGGAAGAAAGCCGGTGCCTCAATGTTCTTTCTAGAGAACATCTTTGTTCCGCCAATCAAATTCCGCCCCCCAACTAAAGGAGGTGATAAAGTGATGGAACATCCTCAAACTATGTTGTTGACTAAGGTTTTACAGTCCAACATATCCCTAGGAGATGCCCATCGAAACAAGTCGGAATCGGAAACCTCAAAGAGAACCTCAATAGTTCTACACGAGTGGATGAAACTTCAGCAATCTGTAAACCTGCTATTTGACAACAAAACCGCTTCAGGCCAAAGAGATGCATCTACTGGAATATGTCAGTTGCTGGAAAAGAAGGAAGGCATCTTCCGCCAGAAAATGATGGGAAAAAGGGTCAATTTTGCATGTCGCTCTGTAATTTCACCTGATCCTTATTTAGCAGTCAATGAGATTGGGATTCCCCCATATTTTGCTCTAAGGTTAACCTATCCTGAGAGAGTGACTCCTTGGAATGTAGTAAACTTAAGGAATGCTATCCTCAATGGTCCGCAGTCTCATCCGGGTGCAACACACTTTGGTGATAAAGGATCAATCGTCATGCTTCCTAAAAATGGAAAGTTACTTTCTATGACATCAAGGAAATTACAATCCTCAAGAGGCGTTATTGTGCATCATGGGAAGATAGAGGAACATGGATTTGAAGGGAAAGTTGTGTATCGTCACTTGAAGGATGGTGATGTTGTGCTTGTCAATCGACAGCCCACGCTTCATAAACCTAGTATAATGGCACATATAGTTCGCATTCTAAAGGGGGAGAAAACAGTACGCATGCATTATGCAAACTGCAGTACATACAATGCTGATTTTGATGGTGATGAAATTAATGTTCATTTTCCACAAGATGAGATTTCACGTGCCGAAGCTTACAACATTGTAAATGCCAACAATCAATATGTGAAGCCTACAAGTGGTGATCCAATCAGAGCACTAATTCAGGATCATATTGTAAGTGCTGCTCTTCTGACAAAGAAGGATACCTTTTTAAATTGTGAAGAGTTCAATCAACTTCTCTACAGTTCTGGTGTATCCACCACTGGGGTGGGCTCTTTCAATGGCAAGGAGGGAAAGAAAGTTTTCATGTCAAATTCCGAGAGTGAAATGAGTCTGTTTCCTCCAGCGATATTGAAGCCAGAGCCTTTATGGACAGGAAAACAGGTTATCAGTGCATTGCTATACTATATCACTAAAGGTTCCCCACCATTTACTGTTGAGAAGAATGCAAAAATTCCATCTAATTTTTTTAAGACTCGAAAGGAGGAGGGGAAAAAGCGCACCAAAAATAAATCAAGAAACAAGGATGTTCCTGATGAAGATAAACTGTTGATATATAGAAATGAGTTGGTGCGCGGTGTAGTTGACAAAGCCCAATTTGGTGACTATGGAATGGTCCATACAGTGCAAGAATTTTATGGATCGAATACTGCTGGCATTCTGCTTTCGGCATTAAGTCGGTTATTCACTACCTTTTTACAGATGCATGGGTTTACATGTGGGGTGGATGATCTTCTAATAACAGAAAGAAAGGATGCTGAAAGATTAAATCAACTTGAAAGCTGTGAGGAAATTGGCGACATTGTTCATCGTGAATTCATTGGAGTGATGGAGGGTGAAAATATAGATCCAATCACACTGCAGTTGAATATTGAGAAAAAAATACGCAGTAATGGAGAAGCAGCCTTAACATACTTAGATAGGAAGATGACAAGTAATCTTAACTCTAGAACAAGCTCAGGGGTACTAAAGGAGCTACTGTCTGAAGGATCATTGAAACCCTCCGGAAAAAATTGGATTTCTCTTATGACTACATCTGGGGCTAAGGGAAGTTTGGTCAATTTCCAGCAAATATCTTCGCATCTAGGCCAGCAAGAGTTGGAAGGAAAACGTGTCCCACGAATGGTTTCTGGAAAGACCTTACCATGCTTTCCTCCCTGGGATTGTTCCCCTAGAGCAGGAGGGTTCATTATTGATCGATTTCTTACAGCTCTTCGTCCACAGGAATATTACTTTCATTGTATGGCTGGTCGTGAAGGATTAGTTGATACTGCTGTTAAAACATCTCGGAGCGGTTACCTGCAAAGATGCCTAATGAAAAACCTCGAGTGTCTTAAAGTTTGTTATGATCATACTGTCCGTGATGCTGATGGTTCAGTTATTCAGTTTCACTATGGAGAAGATGGCGTAGACGTCCATCAAACTAGTTTTATCACCAAATTTGAAGCATTATCAACTAATAAAGAGTTGGTTGACAGCAAGTGTTGCCGTCAGCTAGATAGATCCAGTCCTTATATTAACAAATTGCCCGATGCTCTTAAAGGAAAAGCAGAAAATTTCTTTGATGGTTACTCTTCAAAACACAGAAATTTTGGTTCAATGAAAAGAGCCGAGTTCCTGAAATTGATGGAGCACAAGTATGTCTCATGTCTTGCTCAACCAGGTGAGCCTGTTGGCGCGTTAGCTTCTCAATCTGTTGGAGAACCGGCAACACAGATGACGTTGAATACTTTCCACCTTGCCGGTCGAGGTGAAATGAATGTAACACTTGGAATTCCACGTTTGCAAGAGATCCTCATGGCTGCCTCCCAAAATATCAAGACTCCATTTATGACATGCCCCCTGAGACCCAATAAATCTATGGAAGATGCCATTTGTGTTGCCGATAAGTTGAGGAAGATTACTGTAGCTGACATAATTGAGGATTTGAAAATTTCTGTTGTACCTAAAACTGTTCGCGATGGTGACATTTGTAGTATATATAAACTTACAATGAAGCTACATAAACCTAACCACTATCCAAAATTCACTGATATTACCCTTGAAGATTGGGAGGAAACTCTAAGAGTTGCCTTTGTGAGGGAGTTGGAAGATGCAATTGAAAATCACATGACATTGCTGTCTAAAATTAGTGGCATCAAAAATTTTGTGGCAGATCCAAAGTCAAATTCTTCGAATGATTTAGAAGATGCTGACAACAATGGATCAGAATCTGTGAGAAAAGGTCAAACTAATGACGATCACGACGACGACGATGATGGTGGTGTTGAAGACACAGAGGGGTGTGAAGATCTTGGTTTAGATGCTCAAAAGAGAAAACAGCAAGGTACTGATGAGGTTGATTATGAGGAGGATGATCTTGAAGAGGAAACAAATGATGGTGAGCTTTCAGATGAATTTGAAAAAGCTGGTGAACATGACAGTGATAATGAAGTTAATGAGGATAACAAGAGTGTGATACTTGATGCAAATAACTCTCAAGGACTTGAAAAACAGTCCAAGCGGAAGAATACTGATGGAAAAGATAGTTTGAAAACTAAAAAGATAGTATCTGAAGCCCCAAGAAAAAAGTACGACAGATCAGTTTTTGTGAAATTTAAAGGGATGCATTTTGAGATCCACTTCAAATTTACTAACGAACCTCACATATTGTTGGATCGGATTGCTGAAATAACAGCCAACAAGGTTTGCATCCAGAACTTTGGAAAGGTTGGCCAATGTAAAGCTATTACATGTAAAGAAAGCGGAGTAATCTACTATGGTGAAGATGGCAGTAAAAGGGAAGATATTCCATCCACAGTGAAAGAAAAAATTCCAGCACTTCAGACATCTGGTGTACATTTTGAAACATTTTGGGGGATGCAAGATGATCTTGATGTTAGGTATATTTACTCAAACAATGTCCATGCTATGCTAATGACTTACGGGGTGGAAGCAGCCAGAGACACCATCATCAGAGAAATACAAAGTGTTTTCAAGTCTTACGGGATATCGGTTAGTATACGACACTTAACACTCATTGCTGACTTCATGACACATGCTGGTGGCTATCGCCCTATGAACCGAATGGGGGGCGTAGCAGAGTCTACATCTCCTTTCCTCAAAATGTGCTTTGAGACAGCCTCCAAATTCATTGTTGAAGCAGCTTATCATGGGCAGGTGGACAACTTGGAGACGCCTTCTTCTAGAATTTGTCTTGGTTTGCCTGTGAAGATGGGAACTGGATGCCATGACTTGATTCAGAAGCTTGAAACATGA

Protein:

>Am09G020150.1
MVLAIEGATNSVESVAFSFMTDEELLKSSRVKATNPILFDGLSRPVPAGLYDPAFGPLDEKSPCKSCGQTSKHCPGHFGHIELVSPIYNPLMFNILSNLLQKTCFNCHHFRCSRREVELRTTQLELIKKGNIAKAKNLDSLKPDESIHESIHSDDGDDDQCCNAEKPGENWTSLQFSEAMSVLRKFITKSQRKCANCGINNPKITKPIFGWFHVKSLSASQARANVISGEVAPLASETIDDDISLGIGDTTDEENVASASKATSDAKRHKKTNRNLSYKLAEKNALDGSLLPSQVKGILELLWENEARLCSFISDMQDQGLGKKAGASMFFLENIFVPPIKFRPPTKGGDKVMEHPQTMLLTKVLQSNISLGDAHRNKSESETSKRTSIVLHEWMKLQQSVNLLFDNKTASGQRDASTGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVNLRNAILNGPQSHPGATHFGDKGSIVMLPKNGKLLSMTSRKLQSSRGVIVHHGKIEEHGFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRILKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLNCEEFNQLLYSSGVSTTGVGSFNGKEGKKVFMSNSESEMSLFPPAILKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSNFFKTRKEEGKKRTKNKSRNKDVPDEDKLLIYRNELVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTTFLQMHGFTCGVDDLLITERKDAERLNQLESCEEIGDIVHREFIGVMEGENIDPITLQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGVLKELLSEGSLKPSGKNWISLMTTSGAKGSLVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSVIQFHYGEDGVDVHQTSFITKFEALSTNKELVDSKCCRQLDRSSPYINKLPDALKGKAENFFDGYSSKHRNFGSMKRAEFLKLMEHKYVSCLAQPGEPVGALASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAASQNIKTPFMTCPLRPNKSMEDAICVADKLRKITVADIIEDLKISVVPKTVRDGDICSIYKLTMKLHKPNHYPKFTDITLEDWEETLRVAFVRELEDAIENHMTLLSKISGIKNFVADPKSNSSNDLEDADNNGSESVRKGQTNDDHDDDDDGGVEDTEGCEDLGLDAQKRKQQGTDEVDYEEDDLEEETNDGELSDEFEKAGEHDSDNEVNEDNKSVILDANNSQGLEKQSKRKNTDGKDSLKTKKIVSEAPRKKYDRSVFVKFKGMHFEIHFKFTNEPHILLDRIAEITANKVCIQNFGKVGQCKAITCKESGVIYYGEDGSKREDIPSTVKEKIPALQTSGVHFETFWGMQDDLDVRYIYSNNVHAMLMTYGVEAARDTIIREIQSVFKSYGISVSIRHLTLIADFMTHAGGYRPMNRMGGVAESTSPFLKMCFETASKFIVEAAYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLET*

Promoter(3k):

>AM09G020150.1
GTTTCATCTTCTCATCCACATGCTCCCACCCAGAAGGATCACGCTTGACATCATATAATTTCTGCTTTTTCTTCTTTTGTGCACCTTTTGTTTTAACTTTAAATGGTGGTGCAACCATTGAAGAAGTGGTAGGGAATGCAAGCTCATTAAGTTGTTTCTTGAAGACGAATCTCTCCTCAGGAGTCATACGATTATATCTCGCCCAAATCATCTCCATTTGGTAAGAAATATCACAGTCAGCCGATTTTTCCTGCGAGAATTTATCATCTATAGAATCCAAACTCAATTTTTTCCAATGGTCGTCTACAACATCCAACGGAATAGGAGTACCGGAGACATGGTACACACCTAGCTCACAAGCACAAGGAAGAAGATGTGTCTTTCTAATAATGCACCCACAACGGGCTTTGTCATACCCAACCCCAGATGTCGATTTTGAAAACTCTTTAACAATATGATCCAAAGCATTTAAAGAGACAAGACCGCGAAGCTTTTTAAACAAAGGAGTATTGGAAGCCACTTCAATACAGTTTATGCTTCTTTGAAATGACCCGATTACTTTATCAAAATGAAGAGTAAGCATCTCATGCATAAATTTAAAAGACTTAGACAAGTCACCTCCAGAAGTCCTCAAATGTCTCTTCAAAGTCCAATGAGCTGACTCGACTCTTAAATAATAACAATAAACACGTGTCAAAAAAATTTAAACTACGATAAAAATACTAAACACGTGTCAAAAAAATTTAAACTACGATAAAAATACTAAACACGTGTCAAAAAAATTTAAACTACGATAAAAATACTAAACACGTGTCAAAAATTTAAACTACGATAAAAATACTAAACAGGTGTCAAAAAAATTTAAACTACGATAAAAATACTAAAGACGTGTCAAAAAAATTTAAACTACGATAAAAATACTAAACACGTGTCAAAAAAATTTAAACTACGATAAATATACTAAATACGTGTCAAAAAAATTTAAACTACGATAAATATACTAAACACGTGTCAAAAATTTTTAAACTACGATAAAAATACTAAACACGTGTCAAGAAAATTTAAACTACGATAAAAATACCTATTGGTGGTCTGATTCCCGAAGTGTGAGATCTGGTTTGTCCATGCCAAGATAAATCTTTCCTTATGCTTTGTCAACCATGTGTCATGCACATACTTAATAAGAGCGGGCAAGTCAACGCAGGAGTCCTTAAAAATCTTCAAGTGAGCTGAGTACTCTGACTCGTCAAGTGAATCAATAATGTTATGCCAATGAGAGAGTACGTCCTTTTGCCTATCCACGTGCACTAACTCTTTAATCTTCGCTTTCACATTTTTAGTCACGTGCCAAGAACATAACAAATTTGTAGCCGAAGGAAAGACATCAACAATACCGGACATAAGACCAAGATCTCTGTCAGTCAACAACACCTGAGGCTGAAGACCGTGCAAGTCAAATAATTCTTTCAGTTGCTGCAATGCCCAAGTAAAATGAATTCCAAGCTCGTGTGAAATATAGGCAAAAGCAACCGAGAAAGTTAACTCCGTTGAAGTGACACCTACAATCTCCAATAGAGGTAGATTGTATTTGTTGGTCTTGTAGGTGGTGTCAAGAATAAGAACCTTTGGAAACAACCGGAATAACTTAATAGAAGTGGGATGCGCCCACATGATGTCACTGACCACATCGGAACCCTCAACTTTTCTGCTCCAACATAAATAATTTTGCGACTCAATCAATCTCAAAAGCTCCTGAATGTCAGTTCTAGGACCCCTCTTAGAAGACCTATAGGCGCAACGCTGCCTATATATTTGAGGAAGAGAAGTGACGTTGTCCGGATAATGGTTCTTCAAAGCAGTAAGACAATCTTTTGGGGCAACATTCAGACCAGTGTGCTCATTAACAATAGCTAGCTTTCTGCGGCTTAGTTAAACGACCAAAAGCTGTCGACCCGATCGGGGTAGTAAGCAACTCATGTGTGTGAAGACCACACCTAACATTCACACGCCAACCCCCATGACGTATTGTACAAGTAGCTCTCAATGTAAACGGACAGCTTCTTCTCTTAGACCCGAAAACTCTAGAATCATTAGACCACTTCCCTTGCTTCTCGCAACCAAATATAATCTTATCTCTAGAACCCCTTTTACCTCCAGCTTTGTCAGATCTTACGATGATAACCACAACTCCAATACGCCTCCCAACCGCGTTAGCCCACTCTTCAACATCCTGGCGTGTAGAAAAAATCTACAAAATAGAAAAAATAGATAAATGTTGCGTACTTAATTAATTAAATATCTGCCAAACTTTGATCAAGAAAATTGGTTTGAAAAATATACCCTCTCCGTCCAGAATGCCTCTGTAGTGTCTACCACGAAAGGAACAACTTGCGACTTTGTATGCACAATATCTGTTTCAAAATAGAACAAAAGTTATACAGAAAATAATTTAAAAAAAACAAAGCGGATTTACGTGCCTCAAACGTAAATCCGCTTTGTATTTTTTACAAATCGGATATACCCCCATCAGGTATATCCGATTATAAAAGCGGATTTAGGTAAATTCGATTGCGCATCGAATTTAGCTAAATCCGATTTATTAAAATTTAGCTTTCTGTTCTGAATTAAATGGTCAAATCGGATTTATCTGTCAGTTTGATAGATCCGATTTGATTTATGCGTGTGAGTTTAAGTATTTAAAGCTAATCGGATTTACCTTCTATTTAGGTAAATCCGATTTCCAGATTAAGTGATCCCCCACCAGAAAATCTTCCAAAAGTCAATTTTTGTAATTTACGTCAGGGGTATTTTCGGGATTACGATATTGGGTGGGGGTACGTGGGAGTGGGGGGGGGGGGGGGTGTTTGGGGGTGTTTTATAAAAAAAAACCCTAAGAAGCATTGCAGGCATTCTTGTGTTAGTCTTCCCGTCCTCAAACCACTGCCGTTCTTCTTGTGTTACTCATTCGTCGCCAACCTAAAGTCGTTCTTCTACGGCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04998.20	RNA_pol_Rpb1_5	990	1614	9.80E-84
PF00623.23	RNA_pol_Rpb1_2	437	621	2.90E-58
PF04997.15	RNA_pol_Rpb1_1	10	434	4.30E-34
PF04983.21	RNA_pol_Rpb1_3	625	830	7.80E-33
PF05000.20	RNA_pol_Rpb1_4	892	982	9.80E-21

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003841	1-acylglycerol-3-phosphate O-acyltransferase activity	Molecular Function
GO:0009506	plasmodesma	Cellular Component
GO:0005829	cytosol	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0042254	ribosome biogenesis	Biological Process

InterPro

InterPro term	Description
IPR006592	RNA polymerase, N-terminal
IPR000722	RNA polymerase, alpha subunit
IPR038120	RNA polymerase Rpb1, funnel domain superfamily
IPR007081	RNA polymerase Rpb1, domain 5
IPR007083	RNA polymerase Rpb1, domain 4
IPR042102	RNA polymerase Rpb1, domain 3 superfamily
IPR007066	RNA polymerase Rpb1, domain 3
IPR007080	RNA polymerase Rpb1, domain 1
IPR044893	RNA polymerase Rpb1, clamp domain superfamily
IPR045867	DNA-directed RNA polymerase, subunit beta-prime
IPR015699	DNA-directed RNA pol I, largest subunit, N-terminal domain
IPR047107	DNA-directed RNA pol I, largest subunit, C-terminal domain

trEMBL

trEMBL term	Description
A0A8B8M613	_

SwissProt

SwissProt term	Description
NRPA1_ARATH	DNA-directed RNA polymerase I subunit 1

KEGG

KO	Description	Enzyme
K02999	DNA-directed RNA polymerase I subunit RPA1	[EC: 2.7.7.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G57660	nuclear RNA polymerase A1
Medicago sativa L.	MsG0480020877.01.T01	_
Oryza sativa L.	LOC_Os04g41490.1	DNA-directed RNA polymerase III subunit RPC1, putative, expressed
Cucumis sativus L.	Csa002453	_
Glycyrrhiza uralensis Fisch.	Glyur002976s00038387.1	_
Codonopsis lanceolata	Cl_chr01_18070T	_
Arachis hypogaea L.	AH01G01160.2	DNA-directed RNA polymerase I subunit 1 like

Expression pattern