Gene detail

Detail information of Am09G019560.1 Annotation

Gene ID	Annotation
Am09G019560.1	catalytics

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G019560.1	mRNA	Chr09	68559423	68566480	+

Sequences

CDS:

>Am09G019560.1
ATGCTTCATCAAAGGTCTATTGGTGTTCTTAATCGCCTTTTCTATCACCAAACCACCTCAAAGTTTCAATTCCCTTTCTCATTCTCACGCCGCGTTACACTTTCAAAGGTTCTTTCAATGGCAACATCGCATTCCCAATCCCATCATAATTACACCAACCGACTTGCTTCTGAGCAAAGCCCTTATCTTCTCCAACACGCTCATAACCCTGTTGATTGGTATCCCTGGGGAGAAGAAGCTTTCGCCGAAGCACGCCGCCGTGATGCACCTATCTTCTTATCAATTGGCTACAGCACTTGTCATTGGTGTCATGTAATGGAGGTTGAGTCTTTTGAGAACGAAGGGGTTGCCAAGTTGTTGAACGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGAGACCAGATGTTGACAAGGTATACATGACGTATGTGCAGGCTTTATATGGTGGAGGAGGTTGGCCTCTTAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTTCCCCCTGATGACAAATATGGCCGGCCTGGATTTAAGACTATACTCAGGAAGGTAAAAGAGGCTTGGGAAAATAAGAAGGACATGCTAGTTAAGAGTGGAGCATTTGCAATTGAACAGCTTTCTGAGGCACTGTCTTGTAGTTCAACTTCTGATAAATTACCTGATGGTGTTCCAGCCAGTGCATTGCGTCTATGCTCAGAGCAGCTTTCTGAGAACTATGATTCGGAGTTTGGTGGTTTTGGATCTGCGCCAAAATTTCCAAGACCAGTTGAGATCAACTTGATGCTTTATCACTCAAAAAAGTTGGAGGATATCGGAAAGTTGGATGGAGCTAACGAAAGTTGGAAAATGGTTTTCTTTACCTTGCAATGCATGGCAAAAGGAGGCATTCATGATCATATTGGAGGGGGGTTTCACAGATATAGTGTGGATGAGTGCTGGCATGTGCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATTTAGATGTTTTTTCAATCACAAAAGATACCTTCTATTCGTATATATCACGGGATATCCTTGACTATTTGAGGAGAGACATGATTGGTCCAGAAGGTGAAATTTTTTCAGCAGAGGATGCTGACAGTGCCGAGACTGAAGGAGCTACAAGAAAGAAGGAAGGAGCGTTTTACATATGGACCAGCAAAGAGGTTGAAGACATACTCGGAGAGCATGCTGCTCTTTTTGAGGAAAATTATTACATAAAGAAAACGGGTAACTGTGACCTATCTACAATGAGTGATCCTCACAATGAATTCAAGGGAAATAATGTCCTGATTGAGAGAAAGGATCCTTCAGAAATGGCGTCTAAATATGGCATGTCCGTTGAGACATATCAAGAAATTCTTGGAGAATGTAGGCAAAAGTTGTTTGAAGTAAGGTCAAGACGCCCAAGGCCACATTTGGATGATAAGGTCATTGTATCTTGGAATGGACTGGCAATCTCATCTTTTGCTAGGGCTTCTAAAATCCTCAAGGGTGAAGCTGAAGGGACCAAATTCAACTTTCCTGTTGTTGGCACTGAACCGAAGGAGTACATGAGAATTGCAGAAAAAGCAGCATCCTTTATTAAGAAGCAACTTTACAATGCAGAGACTCACAGGCTACAACATAGTTTCAGAAATTCTCCTTCTAAAGCTCCTGGCTTCTTGGATGATTATGCCTTTCTGATTTCTGGATTGCTGGATCTCTACGAATTTGGTGGTGGAATTAACTGGCTTTTATGGGCCATTGAATTGCAGGAAACCCAGGGTGCTTTGTTCCTTGACAAGGATGGAGGTGGATATTTCAACAATACAGGAGAAGATTCTTCAGTTCTCCTTCGTGTGAAGGAAGACCACGACGGGGCAGAACCCTCGGGGAACTCTGTTTCCGCCATAAATCTTACAAGATTGGCTTCCATAGTTTCTGGAAGTAAGGCCGAGCAATATAAGCGAATTGCAGAACATCTATTGGCAGTTTTTGAGAAAAGATTGAAAGAGACGGCCATGGCAGTGCCTTTAATGTGTTGTGCAGCGGATATGCTGCGTGTACCTTCCCGGAAGCAAGTGGTGGTGGTTGGTGAAAGGACTTCTGAGGAATTTGAAAGCATGCTTGCTGCAGCTCATGCATTATATGATCCCAACAAAACCGTTATCCATATAGATCCCAGCAACAAAGAAGAAATGGAATTTTGGGAAGTAAATAACAGCAACATTACTCTAATGGCAAAGAGTAACTATTCAGTAAACAAGGTTGTAGCTCTTGTATGCCAAAACTTCACATGTAGCCCCCCTGTGACTGATCATTCATCACTGGAAGCTTTGCTCTCCCAAAAATCCTCCTCTTCTTCAACATAA

Protein:

Promoter(3k):

>AM09G019560.1
CCCTCCTCCATATGACAAGATGATGAGGATAATTTCGCTAAATTTCTAATCAAATGCATCTAAAATAGTTTATTTTAGTTTCGAGAAAGGCAAGAATGGATCGGGTCTTTTTGGGTTGCAGCAACCCATTTCACAGTGATAGGAGTACAAAGTGAGAGATCGGGTAGTTTCTCAATCTGTAACGCTTCCTTCTACACTATCTCTGTATTCATCGCCTTACTTCGATTTGCTCTATGATTCTTTCTAATTTAATTCTATGTCAGCAATGGTGTTGCCGCCTTGGAGAAACCGATGTCGCCTGCAAAGAATTCCAAAGAAAAACACACTCTAGAGCCTCTTGTCGATCCCGTGCGCTTAGATTGATACTCAGATCGACGGAGATGTCTCTGTTGATGCCAATCACTGAAGGTATCTCTTTGCAAGTCACACTTTTCAATCTATTTATCTTGATTAATTTTTATTTCTATTAAGGACTTTGAGTGAGGTGATGTTACCAAGAGAAAGGGGGTAAGTGAAATCAAGAAGAATGTAAACAAAGGAGATGACTTGAAGATTCTGGAAAGTTCCAACGGAGTTAGGAATCCCTGAAGGTATCTCTTTGCAAGTCACACTTTTCAATCTATTTATCATTAGTATTGTTTTTTATTTGTTCCGCTATCATATTATTTATATTTATCGGTCATTCCTATTGTTGTTGCAATGCATTGATTTTGAGCAGAATTATCATGATTTCTGGTTTGTCTCTGTTCCAACTCCCGAGGCCTTGGCTAAAGATGATAATGGAAAGAAAGAATGATAGCTGGAGAAGAAGAACTATGTTCAGATGTTTCTCTATGTTGCAACCTTTTTCCTGATGTCTCCAACTGATTTTTTTTGCTTTGTTTTTAGTTGAGCATGTAAAATCTTTAGTGTAGATGGGCTTTGTTCATTGCTATTAATATAAAAAATTTATCTATTCACCTGTATATCTTCGTTTTTCAGATTTTATGTTCCCTTTTCATTGAAAAATAGCTTTATTGGGTGGAATGGTTTTAACTTTTAATAGTTGGCATTTGAATTTGAAAGCTGGTTTGGCTTTAATGAAGGGAAGATGAATGATGATAGGAGAACATATGGTTCACATGTATGACTTTTGTGTAGTGGGGTAAATTGGAAAACTACGGTGGTGTATAAAGCTAAAGTGGTGTCAATTTGTGTTTTGAAATATTATATGATAATAAAAATAAAAATAATTGAAATATAATAAATGCATTTCACCTAGAAACTTAAAGCATACTTGGCCCCTGCAACGTACGAAATTGTAATCAACTTTATGAATGAAGGTTTTGGATCCACTTATATTTGATCTATTCAAAGCTACTTGTGCATATTTACCAAGAAAATTAGAAAATGTTGTGTTTCTTTGTGGTGAATGGTTAACTGTTGCAAAAAAAAAGTGTGTATCTATTGTGGACATCATCCAATAACGTTGTTAAAATAGAATTGTCTCAAAAAAAATTGATGTTTGTGAATGCAAGTTTGCATTTAGTAAATAGATGTGATGGTTACCTACATTAATTAGTTGGAATACATCTAGAAACTCATGAGCCAAATTATGAAAATACACATAGTTTTGCTAGATGAATATAATTATATATGCGAAATTCGTTGCCCTAAATAAATTGGCAGAAAAATAAGATTCGGATAGAATAAAAAAAAACAGATTATTGTGTTCCATTCCTTGAATATATACGAGTCATGTGTGCGTGTCACACATCATCAACCATGTTAAATTTATATTGAATGAGCTATCAACCATTCCTTGAATATATACGAGTCATGTGTACTAAGACGAAATGTAGAAACGTTAAATGACAACCCCGATTGGTGTTGTGTGATTCAGACCCGAATTTAATAAAGTAACTTTCGTAGAAACGTTAAATGACAAGCCGGATTGGTGTTGTGTGATTCAGACCGGAGGTTAACAAGGTAACTTTCCTATGATTCTTATCGTACCAAATAGTAGCATTATTTTCTTAAACTCTTTACAATTGATTGGTCCATTGAGCGTAATTTATTAATTTATTTATCCTTCTTTTAAAAGTATGAAGAACTAATGTCAGAAATGTTAAATGACAAGCCCGATTGGTGTTGTGTGATTCAAACCCGAGGTTAACAAAGTAATTTTCGTACGATTCTTATCGTACCAAATAGTAATGTTATTATAATTAAAGGTACGAAGACGAAATGTCGTTACTGATACTGCTAAGATAATGGATCTTTTTGGAGTTAATGGTCTCTTAGGTGCCTTTACGCAGGATGGTTCACCCGACTTATACTACATGATGATGCTTTCGTATTCATATTCCAAGGTAATGTTTTTATTTTTCAATAAACGCTCCCACTTCTGATGGAATTATTCTTTGTGTTCAAAATGGTTTTTCGTCAGTGAAAAACCATTTTGTTGTTTCCCTCCCATTTAGTATGCTAATCATCATTTTTTTTGTTTTCCTTGATCTATGGTTGTTTTAGTGTTTTTGTTGTCAACTACTTATTAAATGTCAACAATTAAATCTTCCCACCCAAAATTAAAAGCAAAAATTATAAGCATTCCACCCAAAAATAGAATGTTTTCTGTATTTATTTTGGCCGTTGCTATGATTCCCGTCGGACGGGAATAGTGTCTAGTTTCTTTGACAGTCTTCTTTGACATTGTCATATAAATATAAATTATTAGAAAAATAACTTTTTTAAATTCCAATATTATACTTTTATATGGAGATATTTTTGTCTCATGTTATTATGATTTTCGTAAATTTTATCCATATTAATTTTACTTTAAGAGAAGAGAGAGACGGGGAGAAAGATGAGCCAGTTGTCAAGGAAGAAGGAACTCCAAGTGTTGTTGAGAAGAGAAGTAGCATACATGGCAACTGTTGGAAGAAGAAAAGAGAAAAGTGACGACTACTCATAAACACAACAGCAGCAACACCCTCTCTTTCTCTTCTTCACAACTCTTCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03190.18	Thioredox_DsbH	52	212	7.20E-75
PF13899.9	Thioredoxin_7	72	161	2.60E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009507	chloroplast	Cellular Component
GO:0004798	thymidylate kinase activity	Molecular Function
GO:0016149	translation release factor activity, codon specific	Molecular Function
GO:0046940	nucleoside monophosphate phosphorylation	Biological Process
GO:0006415	translational termination	Biological Process

InterPro

InterPro term	Description
IPR036249	Thioredoxin-like superfamily
IPR024705	Spermatogenesis-associated protein 20
IPR012341	Six-hairpin glycosidase-like superfamily
IPR008928	Six-hairpin glycosidase superfamily
IPR004879	Domain of unknown function DUF255

trEMBL

trEMBL term	Description
G7KRS7	_

SwissProt

SwissProt term	Description
SPT20_HUMAN	Spermatogenesis-associated protein 20

KEGG

KO	Description	Enzyme
K06888	uncharacterized protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G03200	catalytics
Medicago sativa L.	MsG0780041272.01.T01	_
Oryza sativa L.	LOC_Os01g70950.1	spermatogenesis-associated protein 20 precursor, putative, expressed
Cucumis sativus L.	Csa001809	_
Glycyrrhiza uralensis Fisch.	Glyur000156s00012017.1	_
Codonopsis lanceolata	Cl_chr06_40130T	_
Arachis hypogaea L.	AH06G03580.1	Spermatogenesis-associated protein 20 like

Expression pattern