Gene detail

Detail information of Am09G019530.1 Annotation

Gene ID	Annotation
Am09G019530.1	Zinc finger C-x8-C-x5-C-x3-H type family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G019530.1	mRNA	Chr09	68530470	68534935	-

Sequences

CDS:

>Am09G019530.1
ATGGAATTGTACGGTCGGAACCCAACGAGGAATGGTTCGAACCCTGGAAATCAATCTGAATGGCGCTCACCGGGTGGCGATACTACACTCGAAGAATCGATGTGGCATTTGACGCTTGGTAGTGGGGAATCGTTACCGGAGCGACCCGGTGCTCCTAATTGTGTGTATTATATGCGAACTGGGTTTTGTGGATATGGTGGAAGGTGTCGTTTTAATCATCCTCGTGATCGTGCTGCGGTTGTTGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAGCGAGTTGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAAACTGTAAATTTGGTGCATCCTGTAAATTCCACCACCCAAAACATGGAGGTGGATCTTTGAGTCTAGCTCCACAGAATATTTATGGATACCCATTACGTCCGGGTGAGAAAGAATGCTCCTACTTTTTGAAAACGGGGCAATGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCCGCTGGTACATCATTGCCAGCTTCTGCACCTCAATTTTATCAACAGACGCAGTCTCCTACAGTTCCACTACCCGACCAGTATGGGGGAGCATCCACTAGCATGAGAGTGGCTAGGCCTCCTATGTATGTACAGGGTGCTTATGGTCCTGTACTTTCCCCAGGAGTTGTTCCATTTCCTGGATGGAGTCCTTACTCGGCATCTGTAAGTCCTGCATTATCTCCTGGTGCTCAACCTGGTGTTGGGGCTACTTTGTATGGAGTGACCCAGTTGTCTTCACCAACATCATCTTTTGCTAGACCATACACTCCCCTGCCCTCTTCTGCTGCCCCTCCAGGCAATAACTCAAAGGAGCGGTCATTTCCTGAAAGACCTGGCGAGCCTGAATGTCAATACTATCTAAGAACAGGGGATTGTAAATTTGGTTTAGCTTGTCGATATCATCATCCTCAGGACCGGGTGACACAGCCACTTCTCAGCCCCTTTGGTCTTCCCATACGTCCGCAGGGTAAATTCGGACATCAGTAG

Protein:

Promoter(3k):

>AM09G019530.1
TTTATTGTATAGCTCATTTTATTGCTTATTAGTTATTATTGTAATTAGTCTAACTAGTTAAGTAGACTTAGTCCGATAGCTTAGTTGTTATTAGTTAGTCCAGTAATTCTCTTGTTAATAGTTAGTCCGGTATCCTACCAATTGTATATATACTTAGTTGAGTGAGAAATAATATCAAGTTTAGATTTACAATTCTAACATGCTCTAACTACCGCCCATTTTACAAATGATTCAAATCTATCTTCTAAAGTACTAATGATGTGATCTATTTTCATAAATCACGAAATTATAATGATCTATCCATGAATTTGAATCAAACATTCACAAAATTCAAAGAAATCGCCACAATTTCCATATGAAATTGATAAGATCAATCGAGTCGCCACAATCTTGAAATGATTGATAAGATTCTTAAAAAAAAGAGTCACGATCGCCACAATTGCCATGAGAAAATGATAAGATCAATTGAATCGCCACAAGCTTCAAAGCATTGATAAGATCTATTAAATCACCACAATTTCCATGAGAAGTTGATAAGATCAAACGAATCGCTACAATCTTGAAAAAATTGGTAAGATTCTTGAAAAGTTCTATGAACCTAGAGTGAGCTCTAACTTCCATCCATTTTACAGGGTAACAAGAAAAATGGATAGGGTGTGACCAATTACCTAAAAGAAGCAAATAGGCCAAGCCCAAGTCCAATTAACTCATGGCCAACAGTAAAGAAGAGAGCACAATACAAGTTCTAAAATCAACTTACAAAACTACACAAATTTATTTAATATAAACAACAAATATAAGATAATTCCTAAAACTATTCTAAAGTCAATATGACTTGAAATTTTCCTTTTGTCTCTTCACGTTCTTCATTTTTGGTTCTCATCATTTACTTTTTAAAATTTTATAACCTAGTTTTATAAACTTATACATTTTGTTCAAAATGTGAATTATTATAATCTATCCTCATACAAATCATGTCTATACGTCGCAGAAGGGTAGCTCACATGGTTGATTGAAATGGACATTGTTGATGAAAACACAGGTGTATGGGGTTCGAACCCCGCTCCGCCTCCTCTCTAACAACTAACACACTAATTACTAACCATTTCGCCTATAAAAAACATGTTTATACTAAAGACAAAAAATACAAAACCGGTGGAAACTGTCCACCAATAACGGGGTAACAAAAAAAAAAAGAGACAAGAGAGGGGGGTTTTGGAGAAGTTATGTTATTTTATGGTGAAGAGAGACAAGAGAGTTTACACAAGTACTCATTGTTTCATGTGTATACATTAGTTCAACTCTTTCTCTTTTGGTTAGCAACATTTGTTCAACTCTCGGGACATCAAGATCAAACAATTCCATTTTTTCCTCTATTGAAAAAAATTCAAGCAATTCCAAATATACGACTGCCCCATCGATAATCAATAATCAATAATAAATATCAACAAATCAACAAATAAAGGAAAAGAAATACAGCTGCATAGCAGCAGTAGTACAATTTGAAAAGACCAATAAAAAGTTGCCCTACTATAGTTGAAAATTCTATGAAGCCTCGATACTTCAAAAATGGAGACGTATCCGTATCGGATACGTATCCGATACCGATACGCACCCGATAATTCTCGATACGTACCCAAAGAGTATCTAATAATTTTTTAATTCTTTTTAAAAAATATTTGACTCGATACTTTTCAGATACATCTTTGATACTTCTTACCAACTAATGATACTTCTCAGATACTTTTTCGATACCTCTTACCAACTAAGCACATGATTGTCACTCATATATGATACACTTTAATACCTCAATAATTAAAAGACAAAATTATATGTTTTTTCGTAATACAATAATAGAAGAAATAATACATTGTGATATGAGTGGGATAAATATATGTAACTATCTCTACTTGATAAGATCACAAGTATTTATTTCTACAATGTGATGAATATATATTGACTAATGATATGCTAATGTTTTATTGACCAATTACGTACTAATATGAATATCTTAGTCTATAAAAAGTCATCTATTTCTGTCACTGACTATTCGTATTATACGATTTCGGGTGGTCTCAGTTACTTGTCCACCATTACTTTTTACGACTAGTCACTCATACATAGGTGTGTCGGTTGTCCTCTTCCTTTCATCCATATATTTTGTGTGATTTTTTTTATCTATTTAGGCAGTTTTTTTTTCATATCTATAAAATGCAATATTTCATTTTTTCATCTTTGTTTTTTTCTATTTGTGTTTCTATTCTATTTTATTTTTTGTTATGTTTTTATATATTTAAATTTTAATTTAATTTTTTATTAAAGTATCCCAGCCGTGTCGTATCTTGATTTTCAAAATTTTCTCGCATCCCGATATCCGTATCGTGTCGTATCCCGTATCGTATCCGGTATCCGGGCTTCATTTTTGAAATGCCATTTTTATCCCAGTATTCTCCTTTAGAAAGGTTTTATCAAAGGCTCCTTTTGTCACATCACGTCCCACACAACCCCACCAACAAAATCCCCGTTCCATCATAATTATATATGGAAGACAGCTCTATCATTTCCACGATGAGAAATAGAATTGTCGATTACCTCTTCCTTTATTATTTCCCCACAACACAACCGTTTTCCCTTTAAACTATTCTCCCCGGATATTAACATTTTCCAGGCGCGCCATTTGGCGGGTACGCACCCAAAAAATTAAATAAAAATAAAGAGATAGAAAAATGAGCTGAAAAAGCCTACACCAGACCGTACAGTACGAGAGAGAGAGAGAGAGAGGAGAAAAAAGAGCATACACTCCGTTTACAATGAAATTACCCGTCTCTGTCTATCAGATTCGCGACGCTAACCTCGCCACGAAGAAGACGATCCATCCAATCTTCTTCCAGAACATTCCAGAACACTCCAAAACCATTGTAAAGAAAATAACACACACATCCTTCACCTCGTTTCTGTGAAACAGTGTCACTACTTCTCAAACCAACAAAACTCGTTTAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00642.27	zf-CCCH	51	75	4.10E-38
PF00642.27	zf-CCCH	96	120	4.10E-38
PF00642.27	zf-CCCH	141	166	4.10E-38
PF00642.27	zf-CCCH	292	317	4.10E-38

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

Gene Ontology

GO term	Description	Category
GO:0003729	mRNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0016301	kinase activity	Molecular Function
GO:0016773	phosphotransferase activity, alcohol group as acceptor	Molecular Function
GO:0140096	catalytic activity, acting on a protein	Molecular Function

InterPro

InterPro term	Description
IPR036855	Zinc finger, CCCH-type superfamily
IPR000571	Zinc finger, CCCH-type

trEMBL

trEMBL term	Description
A0A6P4DT48	_

SwissProt

SwissProt term	Description
C3H32_ARATH	Zinc finger CCCH domain-containing protein 32

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G47850	Zinc finger C-x8-C-x5-C-x3-H type family protein
Medicago sativa L.	MsG0180004886.01.T01	_
Oryza sativa L.	LOC_Os11g28270.3	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Cucumis sativus L.	Csa000042	_
Glycyrrhiza uralensis Fisch.	Glyur000156s00012014.1	_
Codonopsis lanceolata	Cl_chr06_40160T	_
Arachis hypogaea L.	AH16G06380.1	Zinc finger CCCH domain-containing protein 32 like

Expression pattern