Detail information of Am09G019180.1 Annotation
Gene IDAnnotation
Am09G019180.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am09G019180.1mRNAChr096782926167841583+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF10433.12MMS1_N1076651.90E-92
PF03178.18CPSF_A93413191.20E-35
Gene family
Gene familySubfamily
Ubiquitin FamilyDDB1
Ubiquitin FamilyDDB1

Gene Ontology
GO termDescriptionCategory
GO:0005686U2 snRNPCellular Component
GO:0000398mRNA splicing, via spliceosomeBiological Process
GO:0003712transcription coregulator activityMolecular Function
GO:0016592mediator complexCellular Component
GO:0006357regulation of transcription by RNA polymerase IIBiological Process

InterPro
InterPro termDescription
IPR015943WD40/YVTN repeat-like-containing domain superfamily
IPR018846Cleavage/polyadenylation specificity factor, A subunit, N-terminal
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminal

trEMBL
trEMBL termDescription
A0A1S2XTG7 _

SwissProt
SwissProt termDescription
SF3B3_DANRESplicing factor 3B subunit 3

KEGG
KODescriptionEnzyme
K12830splicing factor 3B subunit 3

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT3G11960 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
Medicago sativa L.MsG0280007562.01.T01 _
Oryza sativa L.LOC_Os07g10390.1cleavage and polyadenylation specificity factor, putative, expressed
Cucumis sativus L.Csa002586 _
Glycyrrhiza uralensis Fisch.Glyur000006s00001613.1 _
Codonopsis lanceolataCl_chr04_48770T _
Arachis hypogaea L.AH06G03330.1Splicing factor 3B subunit 3 like

Expression pattern