| Gene ID | Annotation |
|---|---|
| Am09G018330.1 | chloroplast signal recognition particle 54 kDa subunit |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G018330.1 | mRNA | Chr09 | 65350554 | 65359840 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00448.25 | SRP54 | 168 | 363 | 3.40E-78 |
| PF02978.22 | SRP_SPB | 394 | 492 | 2.00E-25 |
| PF02881.22 | SRP54_N | 73 | 150 | 1.30E-18 |
| PF06414.15 | Zeta_toxin | 164 | 274 | 5.90E-09 |
| PF01656.26 | CbiA | 178 | 321 | 5.60E-07 |
| Gene family | Subfamily |
|---|---|
| Transporter family | IISP |
| GO term | Description | Category |
|---|---|---|
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | Biological Process |
| GO:0003924 | GTPase activity | Molecular Function |
| GO:0005525 | GTP binding | Molecular Function |
| GO:0016887 | ATP hydrolysis activity | Molecular Function |
| GO:0016020 | membrane | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR036891 | Signal recognition particle, SRP54 subunit, M-domain superfamily |
| IPR004125 | Signal recognition particle, SRP54 subunit, M-domain |
| IPR000897 | Signal recognition particle, SRP54 subunit, GTPase domain |
| IPR022941 | Signal recognition particle, SRP54 subunit |
| IPR042101 | Signal recognition particle SRP54, N-terminal domain superfamily |
| IPR013822 | Signal recognition particle SRP54, helical bundle |
| IPR004780 | Signal recognition particle protein |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR003593 | AAA+ ATPase domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XT91 | _ |
| SwissProt term | Description |
|---|---|
| SR54C_ARATH | Signal recognition particle subunit SRP54, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| K03106 | signal recognition particle subunit SRP54 | [EC: 3.6.5.4] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G03940 | chloroplast signal recognition particle 54 kDa subunit |
| Medicago sativa L. | MsG0780041138.01.T01 | _ |
| Oryza sativa L. | LOC_Os11g05556.1 | signal recognition particle 54 kDa protein, putative, expressed |
| Cucumis sativus L. | Csa011840 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000007s00002854.1 | _ |
| Codonopsis lanceolata | Cl_chr04_07840T | _ |
| Arachis hypogaea L. | AH16G22550.1 | Signal recognition particle 54 kDa protein, chloroplastic like |