| Gene ID | Annotation |
|---|---|
| Am09G017650.1 | Pentatricopeptide repeat (PPR) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G017650.1 | mRNA | Chr09 | 63394356 | 63397001 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 131 | 179 | 1.10E-69 |
| PF13041.9 | PPR_2 | 234 | 282 | 1.10E-69 |
| PF13041.9 | PPR_2 | 366 | 413 | 1.10E-69 |
| PF13041.9 | PPR_2 | 572 | 618 | 1.10E-69 |
| PF01535.23 | PPR | 369 | 398 | 2.20E-68 |
| PF01535.23 | PPR | 472 | 498 | 2.20E-68 |
| PF01535.23 | PPR | 574 | 604 | 2.20E-68 |
| PF12854.10 | PPR_1 | 367 | 395 | 3.40E-42 |
| PF14432.9 | DYW_deaminase | 789 | 881 | 1.50E-35 |
| PF20431.1 | E_motif | 691 | 752 | 2.60E-13 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0009451 | RNA modification | Biological Process |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0009793 | embryo development ending in seed dormancy | Biological Process |
| GO:0003723 | RNA binding | Molecular Function |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XT27 | _ |
| SwissProt term | Description |
|---|---|
| PP363_ARATH | Pentatricopeptide repeat-containing protein At5g03800 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G03800 | Pentatricopeptide repeat (PPR) superfamily protein |
| Medicago sativa L. | MsG0480019408.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g07620.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa011969 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000075s00007201.1 | _ |
| Codonopsis lanceolata | Cl_chr04_06180T | _ |
| Arachis hypogaea L. | AH03G12110.1 | Pentatricopeptide repeat-containing protein At5g03800 like |