Gene detail

Detail information of Am09G017360.1 Annotation

Gene ID	Annotation
Am09G017360.1	transducin family protein / WD-40 repeat family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G017360.1	mRNA	Chr09	62655995	62663700	+

Sequences

CDS:

>Am09G017360.1
ATGGTGAAGGCCTACCTCCGATACGAGCCGGCGGCGTCGTTTGGAGTAATAGCATCAGTGGATTCAAACATTACATACGACAGCTCCGGCAAACACCTTCTCTCTCCGGCTCTCGAGAAAATCGGCGTTTGGCACGTGCGACAGGGTCTCTGCACTAAAACCCTAACCCCTTCAACTCCGTCACGTGGTCCTTCTAACGCCGTCACCTCTATCGCTTCCTCCCCTACTGTATTGATTGCTAGTGGTTACGGTGATGGAAGCATAAGAATTTGGGACTCTGATAAGGGAACTTGTGAAACTACGTTAAATGGACATAAAGGAGCTGTTACTGCTCTTCGTTATAATAAGCTTGGCTCGTTACTCGCTTCTGGTAGCAAGGATAATGATGTCATTTTATGGGATGTAGTTGGTGAGACGGGACTCTTTCGTCTTCGTGGGCATCGTGATCAGGTGACTGATGTTGTTTTTGTGGGGTCTGGTAAAAAATTAGTTAGTTCCTCCAAAGACAAGTTTTTGAGAGTGTGGGATATTGATACACAGCATTGTATGCAAATTGTTGGGGGGCATCATAGTGAAATATGGTCATTGGATGTTGATCCTAGTGACAGATATCTGGTCACTGGTTCTGCAGACCAGGAACTTCGTTTTTATGCGATTAAGCATGAGTCTGTGGATGGGGAGTCAGGAAATGGCGGTCAAGATTCTTCTATTCAAAATAAATGGGAAGTTTTGAGGTCTTTTGGTGAAATTCAGCGGCAGAGCAAGGATAGAGTTGCCACTGTTCAGTTCAACAAGTCAGGGAGTCTGCTGGCTTGTCAAGTTGCAGGAAAGATTGTAGAAATATTCCGTGTATTGGATGATGCGGAGGCAAAGCGAAAAGCAAAACGCAGGGTTCACCGCAAAAAGGAGAAGAAACATGCGAAAGAGGTTATAGAGGGAGCTGAAAATGGAGACGGGAATAATGATAACAAAGGATATAAATCTACTGTGACTGGTGAACCCATAGAAACAAGTAACCTCACAGTTACTGTGTCTGATGTTTTTAAGCTGTTGCATACTATTAGAGCTAGCAAAAAGATATGTTCCATTTCTTTCTGTCCGATCACTCCAAAGAATTCACTAGCTAGTCTAGCATTGTCCTTGAACAGTAATCTCGTTGAGTTTTACTCCATTGAAAGTGGTGAAACTAAAAAAACACTTGCTATTGATCTTCAAGGACATCGTTCTGATGTTAGAAGTGTGACGCTTAGTTCGGACAACACTTTTCTATTGTCAACCAGTCACAATGCAGTAAAGATCTGGAACCCAAGCACTGGTTCCTGCCTAAGGACCATTGATTCTGGGTATGGACTATGCAGTTTAATTCTTCCCACTAACAAGTATGGACTTGTTGGAACTAAAGAGGGAACCTTAGAAATTATTGACATTGGAAGTGGTACTCGTGTTGAAGTAGTTGAGGCTCATGGTGGCTCTCTGCGGTCAATTACTGCCCTACCAAATAAAAATGGCTTTGTCACAGGAAGTGCAGATCACGATGTAAAGTTTTGGGAGTACCAAATCAAGCAAAAACCTGGTCAAGCTACTAAGCAACTCAATGTGTCAAATGTCAGGACTTTGAGAATGAATGATGATGTTCTTGTGGTTGCAATTAGTCCTGATGCCAAATATGTTGCCGTTGCTCTGTTGGATAGTACTGTGAAGGTTCACTTTGTAGACACATTCAAATTCTTCCTTTCCTTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGACGGAGATTTAATTGTGACTGGCTCTGCAGATAAAAATATAAAGATCTGGGGTTTGGATTTTGGTGACTGTCATAAATCCATTTTTGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGAAAAGACCGCCTAGTAAAATATTGGGATGCTGATAAGTTTGAGCTATTGTTAACCCTCGAAGGACATCACGCAGATATTTGGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATTGTCACTGGATCTCATGATCGTTCAATCCGCCGCTGGGATCGTACTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGATACTGATCTCGGCAATGCATTTGAAAACAAGCATGTACTGAAGGAAGAAATTCCAGAGGAGGGAGCCGTGGCTGTAGCTGGGAAAAAAACCCAAGAAACCCTTACTGCTACTGACTTGATTATTGAGAGATTAGACATTGCAGAAGCTGAGGAAAAGCGTATTGCTGAACATCAGGAGGAAGCAAAAAACAAAAATAATGCTGTTTTCCAGGCAAATCTGCTTATGAATGGGCTTTCACCTTCTGATTATGTTCTAAGTGCTTTTTCAGATATCCACGCAAATGATTTGGAGCAAACATTATTGGCTTTACCATTTTCAGATGCGCTGAAGCTTCTGTCGTACTTGAAAGAATGGACTTCATATTCCGATAAGGTGGAGCTTGTTTGCAGGATTGGTACGCTGCTGTTGCAGACACATTACAATCAGCTGCTTGCCACACCAGCTGCCCGACCTGTCTTGACTGCTTTCAGTGACATTTTTTATGAACGGGTCAAGGGTTGGAAAGATATCTTTGGTTTTAACCTAGCCGCCATGGATCATATCCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCCAAATCAAAACTGCGGGAGATACGTGCTCGACAATCCAAACGTTTACAAGAAAGGTCAGATACTGGAGAAGTGATGCGGAAGAAGAAAAAGAAGACATAA

Protein:

Promoter(3k):

>AM09G017360.1
TGAGGATCCATCTTGAGCTTCATTGATGCCAAACAACCCGTCCGCGTATCCTTCCTTGTATTCAAAACATCTTTGTGAATTTTGAAACCTTGTTTGTGACACATCATATTCAAATAGTGAGGTATATCAGTCTTTTTATTCTTGCTATCCCGATACACATTTGCCTTCTTAATGGTGAAACCCAAAGATTTGGCATAGGACCTGTAAAAAGCATATGCCTCCGGCTCTGTGTGAAAAACAATATCCTTCCAAGATTTTACATCTGAAGGATGATGAGTAACCCCTACCAAAACCAAGTAAAAATAATTAATATCCAACAAACAATATCATAAAAAATATATTTATTAAATAATAACAAATCAGCATGCAACCTGCAACCACAACATCATCGAGTTCGTCATCGTGACATCCGTCATCCATTTCATACTGACCAGGACAACCCTGAACTGCAATAAAGAAATCCAAAATCATAACATGAAGTAAACGTGAAATCTGATTGCATCAACATGAATTAATCCTGAAATCTGAAGTAATAGTTATTGAGAAGCTATATTGTTAGTGACAAGTAATCGTTATGGAAATCTGTGCCATCTAGAAAGTATTAACCACAATTGTACTAATCTGCGGTTAGTGGCTACTAACCAGTGTTGTGCATATCTGTGGTTAGTGACCACTAACCACAAACTAGTACCCCAATGGTTAGTGGCCACTAACCGTAGATATGCACAACACTGGTTAGTGGCCACTAACCACAGATTAGTATTAAAATGGTTAAAACTGAAACATTAACAGAGAAAAATTACAAAGCAACAATTGACTTACGAGCAAGTAAACGTGAAAAGCTGATTGATTCACCATGTTCTTCAACACCAAGCATTTTTAAAATCTGCAGAAAAACAACTTCAAGGAATTTACCAAATGAAAGTTAAGAGTGAAGCGCTACTGGGAATTGAAATAACTAGATGATCAAACAACATCATAAAAGTTAAGAGTGAACATAATCTTTACCAAATGAATGAAGCGCTACTGGGAATTGAAATAACCAGATGAATGAAGCGCTACTGGTAGAGAGAGAGAGAAAAGAAAGGGAAGAGAGAACGACGGAGGAAGGGGACGAACGCCGTGGTGCAGCGTCGGTGACGGTGAGAGAGAGAAAACGTGGTGGTTGCCGTGGAACCTGGTGCGCGTGAAGAAGGAAGAAGGTGGTTGCAGGCAGGCACGGATTTACTTGTTAGTAATTGGGGGCATTTGCCCCCACTTGAAAAATTATTTTGGTTGGGAATATATATATCAAATTTATTTTGCCCCCATAAAAAAATAAAGGTTGCCCCCATAAGATAAATTAAATGTAGAAATTCACAAGACATAAATAAAAAGAAACGTAAATTGGTACTAATTTTATCTTTTTAGCTATGTATTTATAGAAATTTAGGTATTTTAAGGTTTCTTTGTAATGAAATTATGTTCTTTGGAAAGTTTATAATAATTTTTTTAAGAAAATTTTATAGGCTATTTTTTTTGCCCCCACTAGTGAAAATTTCTGGATCCGTCACTGGTTGCAGGTCGTTGCAGGAAGTGATGGAATGCGTGGGAATGGAAGGCTACTGTGTAAAATGACAAAACTGCCCTCTTTAAGTGACAGCCCTTAGATCATATTTCATTAAAATTTGAGGCATCCAACGGCTAAGTATAATTTAGTAAAAAATACTAAGGATCTGAGTTAGTACCTTAAACCACACTCACCGACTCTCTCACGTGGAATCTCAATCATCGTTTAACATGCAGAGTACTTTTTTAGCTTTGACAATAATAGCGTGATGCTAGCCACATTTGCACAACCACCGACATATTGTTTGGAAAAAAGGTATATATCTCAAGCATTTTCGGAATCAAATCAGCACAACCACCACAATCTTTCTATAAGCTTCTTTGAACTAATGTGCCTATTTTTTTTAGGACTGTAATTCTTCTACTTCAACAATTTATGAGACGTATCCATATCCTCAAACATTCCATGTCTTTTAAGCTGGAGTTAAGAGAAATTAGAATTTGTATTGTTATTCTTGAAGCTTGAGTGCAAATTCCTTATTTTTGGAGCTGGTTTTCCAACTTGAGGCGAGTTTGGACTTTGGAGGGGAGAGGAAGGGGAGGCGAGAACTTGGAAAAAATAGGAAGGATGTGTACATAAAAGAGTTTATTTTTCATCATAGAATAGAACCAAATCCTCCCAATTTAGAGGAACTCAAAAAATATACTTGGACAAATTCTTCAAATCATTTAAATCTTTTTACAATAGTGTTAAAATTAAAAATATATTAATTATGAGTATTCTCTTGTCATTGTATATAAAATTATTTTTTCAATTAAGAAGACAAAGATGATAAAACAAGAAAGACTATAATATAATGAGGAACTTAGAAAAAATAAGTCACTTATGTCATCAGCAACAAAATACAAAAATGTGCAATTTCTAATAAGAATTAAAGGGCGAGACACCTTTTAATGGAGAAAGTTGAGGCAAAAAATAAATATTGCTATTATTATCTCCACCTATACTTTTGATTTTCCTATTTATTTTCCAACACCTTTTGAAACATTATAAAAATGATCCAACTCAAGAGTTGGGGTGTTTAAAAATTAAATGCCTCTCCACTCAAGAACAACAAGGAAAATCAAAAGTATAGGTGGTCAAGAATTTAACTTCTTAATCTCAAAAAAAAAAAGAATTTAACTTCTTGAAAAATTTAAATAGGGGTTCATAAGAAAAAAATGAAGTGCAAGAAGCAGCACCTTTTTTCTGAAACACATTAGCCCAACTAGTGTTTTTTGGTCAAGAAGCCCAATAATTTGGGTCAAATCCACGCCCAATGTTGAGAAGCCGTACCAGAGAAAAAAAAAACACAAGCGAAGGTTGGAAGAGAAGAAAAGAAGGAAAAAGCCCCGCCGAAAACATAAACCCTGCCTGCCCTGAAGGCTTAAACCTCAGAGCGAAAGGTAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	96	134	1.10E-54
PF00400.35	WD40	578	611	1.10E-54
PF00400.35	WD40	659	696	1.10E-54
PF04003.15	Utp12	799	899	2.20E-17

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0004664	prephenate dehydratase activity	Molecular Function
GO:0016072	rRNA metabolic process	Biological Process
GO:0006396	RNA processing	Biological Process
GO:0016301	kinase activity	Molecular Function
GO:0009094	L-phenylalanine biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR007148	Small-subunit processome, Utp12
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A445LE11	_

SwissProt

SwissProt term	Description
WDR3_HUMAN	WD repeat-containing protein 3

KEGG

KO	Description	Enzyme
K14556	U3 small nucleolar RNA-associated protein 12

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G21540	transducin family protein / WD-40 repeat family protein
Medicago sativa L.	MsG0880047286.01.T01	_
Oryza sativa L.	LOC_Os03g05720.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa011957	_
Glycyrrhiza uralensis Fisch.	Glyur001053s00027298.1	_
Codonopsis lanceolata	Cl_chr04_04680T	_
Arachis hypogaea L.	AH06G16440.1	WD repeat-containing protein 3 like

Expression pattern