| Gene ID | Annotation |
|---|---|
| Am09G016970.1 | RNApolymerase sigma-subunit F |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G016970.1 | mRNA | Chr09 | 61800630 | 61805724 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF04539.19 | Sigma70_r3 | 400 | 471 | 1.30E-18 |
| PF04542.17 | Sigma70_r2 | 319 | 383 | 7.70E-18 |
| PF04545.19 | Sigma70_r4 | 488 | 540 | 1.50E-16 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:2000142 | regulation of DNA-templated transcription initiation | Biological Process |
| GO:0006352 | DNA-templated transcription initiation | Biological Process |
| GO:0090351 | seedling development | Biological Process |
| GO:0009637 | response to blue light | Biological Process |
| GO:0045893 | positive regulation of DNA-templated transcription | Biological Process |
| InterPro term | Description |
|---|---|
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR000943 | RNA polymerase sigma-70 |
| IPR016262 | RNA polymerase sigma factor, SigB/C/D/F, plastid |
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| trEMBL term | Description |
|---|---|
| A0A3Q7XNT1 | _ |
| SwissProt term | Description |
|---|---|
| SIGF_ARATH | RNA polymerase sigma factor sigF, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G36990 | RNApolymerase sigma-subunit F |
| Medicago sativa L. | MsG0780040965.01.T01 | _ |
| Oryza sativa L. | LOC_Os08g14450.1 | RNA polymerase sigma factor, putative, expressed |
| Cucumis sativus L. | Csa011949 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000163s00011122.1 | _ |
| Codonopsis lanceolata | Cl_chr04_00440T | _ |
| Arachis hypogaea L. | AH16G18750.1 | RNA polymerase sigma factor sigF, chloroplastic like |