Gene detail

Detail information of Am09G016930.1 Annotation

Gene ID	Annotation
Am09G016930.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G016930.1	mRNA	Chr09	61682527	61687443	+

Sequences

CDS:

>Am09G016930.1
ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGTATTCACTTCGATAGAAAGAAATTTGGCGCCGACATTGCGAGGTTCCAGAAAAAAGAAAGCGATAACAATTCGGCGAAGATTCAAAACGCGGCTGAAGATGAAGAAAACGAGAAAACAATAGAAGAAGCTGTGTCTGTGAAGAAAAGGAAGCGGAAGAAAACCGCTACTGAACCGGTTGAAGGATTCAATGTGTTCAGAAGTTCTGCCTCCAAGTCAAACGATGAAATCCAAGAAATTGATGATGAAGAGTCCATTCGTCTGAAGAAAGAACAAAATAAGCAACTCGAGCGCGATGCTATCTTCAGGAAGAAGCATAACATTCATGTCTCTGGCTTCAATGTACCGCCTCCACTTCAAAGCTTTGAAGAGTTGAAAACAAGATATAAATGTTCTAGAAATTTATTGCGGAATCTGGCAGAACTTGGATTTAAAGAACCAACACCAATCCAACGACAGGCTATTCCAATACTCTTACAAGATCGTGAATGTTTTGCTTGTGCTCCGACTGGCTCTGGAAAAACCATTGCATTTGTGTGTCCCATGCTCATGAAGCTTAGGGCTCCTTCAAAAGGTGGCATTCGAGCTGTTATCCTCTGCCATACCCGTGAATTGTCTGCTCAAATATACCGAGAGTGCAAAAAGCTTGTCAAAGGGAAAAAGTTTCGTATCAAGTTAATGACTAAACATCTTTCAAGAAATGCTGATTTTTCAACATTTCCATGTGATGTACTTATATCCACACCGCTTCGATTACGCCTGGCTATCAAGAGGAAAAAGATTGATCTCAGCAGAGTTGAGTATCTTGTTCTCGATGAATCCGACAAGCTATTTGAGCCTGAATTGTTCACGCAGATTGATTTTGTCCTCAAAGCATGCTCAAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCCGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTGGTATATACCGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGGCAAAGTTTTGCAGAGAGTCTAAATCCTCCCGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAAGAGCTGTATGGTGAACTTGCATTTGACAATATTAGAGTTGATGTCATCCATTCTGATCTGTCTCAAGAAAAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGTAAAACATGGGTCTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGCATTAACTGTGTGATCAATTATGACTTTCCAGATTCTGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGCCAAGCGATTACATTTTACACAGAGGAAGACATCCCATTCCTGCGTAATGTAGCTAACCTTATGGCATCATCAGGCTGTGAGGTTCCATCCTGGCTGATGGAATTGCATAAAAAGAAGTGGAAGAAACATCGCCCCAAAAGAGAATCTATCTCAACCAAACCGGAGCTATAA

Protein:

Promoter(3k):

>AM09G016930.1
GTCATTTAACTTCACCAGCTCAGTAGTTTCTGTCATTTTATCGTTTTCGTGTATTTCGAGTTTTATGTGACGCTTTTTAATAATAAAATTGTTGTTTTCGTGTTTAATTTAAACGGTACTTATAAATTGTATATTTAAACTGTAAACCGAAATATAAATTACTATATACACAACCATAATATCCATACAAAAAATGTCCCACTGTGTGTTTCGGCTCCTCCTACTATACACACAACCATACTTCCTAAGCCTACGGAATGGCCTCACGAGGGCCTTCAATCCCTCGAGTACTCGCCATGGCTGGGTGTCTCGTGGAACGGTACCATCCAACGCACGCTCCATGTCATCCACCATCCGAACCACATCTGGCATGGCCTGTGAAAGACATATTTTATAAGTACATATTTTAAAACTAATAAAGTTAATAAAAAAATATGTAAAAGACACGTACCTATCTAGTATCAGGCTCATCCTCCAGCACCACATAATTAGACGGCATAAGGAATGGGTGTGAGACCTTCCCAAACCAAGCAACGTACCCTGGCATGGTGTCTGGCGCACCCGGGATAATAGAGGGCCCTCTCTCTACCAAATGCTGGTCAAAATGTGACCACCTCTCGTCAGCCATCTCTCGTGTAACGACAGCTCTAGTGGTGGGTTTAGGGTCCTCTGGTATCCCCCGGACATGACCAAACTGTCTCAAGACACGATCTGGCATGTAGGGTACCATGCAGCCAGCATTCTGTAAGTGCCCTCTAAGTAGACTGATGAGCTCAAAGGGTTTCCTAGCTGTATGGGCAGTGTAGGGTTGCCAGGTGACCTCATCAGGGTGCAACCTATCCAGGGATACTCGAACAGTATGCATGGCCAACGTCAGTGTGGTATCAGCAACCCACTTTTTTGCACGTGGCTGAGTCTCAACATAAGCTGAGTTCACCCTCTTTAAACCAAAGGGGGATCCCTGAAAGTGCTCGAAGATCCTGGCCTGTAAGGAATATATCAATGCATTTAGTATAATAGATACCTGAAGGTGCTCGAAGATCCAACTTAATTTTAAATATAATAGATACCTAAAGTAGAGCCATGTAGCCAGCCATCTGCTTATTTTTGGGCTTGTTTGCGTCCCCAAGCTGCTCGTATAGATGGGCCAGCGCCATCCTTCCCCATGAGTATCCTCCAGCAATGTCAAAGTCAACCAGAGCTCCCAGATAGCCCAACTTGGCCTTGTTTCCAGACTTGTCGGAGAACGGGCCCCAGCCCAATAAGTAGAGCAGATGTGCCCGAGCAGCATCCTCCCATCTCTCCTCTTCTATAGCCCTACGGTACACCGTCTGCCTAAAGCACTTGAGGGACACAGATAACCCTGGGGCGTGAGCCTGCTCATGTGCCTCATGAGGGTCTGCACCCAACAAGTGAACCAACAAAGCCTCACCCTGATTTTTGGTGTAGTCTGGTAAATCATAAAAATTCCTCATAACGGGGAGGTGGAGCAATGCAGAGACATCATCAAGAGTGATGGTCATCTCACCTATAGGGAGGTGAAATGATGATGTGTCTGAATGCCACCGCTCTATGAATACATTGAAGAGCCCACCAATAATAGTTGGGAATCCAATGTCCCTCAGCGGTAGCAGTTTAGAACGCTCCAGAAAATCAAGAATGTCCCTATTAGGGGCCTCTATCTGTGGAACTCCGTGTGAAAAAAGCTTCAACGGGCCACGATCCTGCATTATGGAATGCAAAAGTCAACCAAAATATTCAAACAAACTAATGATTAAATTAATTAGAGAAAAAAGTAAGTTACTTACATTACCCTCCCATATAGATCTAGCAATGTGAGACCCGTAACTCGATAACACGGATCCATCCTTCGGGCCACCAGGAAAAAGAAATGTGGCACGGGGAGCAGCAGCAGCATCAACAGAAGTAGAAGGAGCAGCATCAGCATCAGGAGGACCAACCAGGTCAGCATCAGCAGGACCAGCCAAGTCTGCTGCCAGATAGTAAGCATCTCTCTCAATGTCATCACCTATGTCCGCCTCCTGCAAAACTGGGGGCACAACTGGGGGCTGCTCAGCACGCCGACCCCTACCCCTAGCTCTGCTAGGCCCAGCATCAGCAGCACGAGCATCCTCCTTCCGTTTACGGTTTGAAACCGTCACAGGTGGTCTGTTTGCCCGACCCTCGGGCTGTGACTGAGAATGAGCACCCCGAGTCCTCGCCATAACTGAAAAACACAAAGGAACACGTTATAAACAATTTTAAAATTTAAAATACAGACTTATGAAAAAATAACAGCTACATTTGGTTCGGGGTACCCGAATACACATTCGGTTGACCCCAACCGAATGCCTAAAATTCATTTCACATTTTAAACCGTTCGGTTGACCTCAACCGAATGGATTCAGGAGGGCTCAACCGAATGGATTCAGGAGGGCTCAACCGAATGACTTCGTGTTGCCTTCATCCCCAGGAGCCATTCGGTTGACCCCAACCGAATGCTTCGCAATTTACAGATATGGAAAAACGCGTAAAAACAGCAAAAAACTCAAAATGCAAGTAAAAGAGTGTTAGCAATCGTGTACCTTATGTATGGAATACGAGATTTAAGGTTGAAATCAAAGATTGAGTGAGTTTGGGAGAGGGAAATTCGAAGAGGGTGAGTAGAGAGGGTTAGGGTTCGGTTGTGGGTGTTTGTGTGAGTGTGAGAGGGGGGGGGGGGTGTGAGGGTTTAGGAGGGAGAAAGGGTGTTTTGATTTAAGGGTATTTTGGGGATTTAGGGGGTTTGAGGGTGTGGGTTGAGTAGGGAGGGGTGTGGGAAAAGTGTTAGCCAAGATGTAAGGCGCAACGAAAAAGGCCCAACTAAACAGAGTTAGTTATCCTCCAAAAAAAATAAAATTTCCTAGCGAAAGGGGAACTTCGGAAAAACGAGAAGTGCCAGAACTAGCCGTCGGCCGCAGCTGAAAGTAGGGCGCAACTGTAAACTCACTTACAATCGGC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	158	322	8.70E-34
PF00271.34	Helicase_C	365	468	1.40E-29
PF04851.18	ResIII	158	317	2.50E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0071013	catalytic step 2 spliceosome	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0003676	nucleic acid binding	Molecular Function
GO:0000398	mRNA splicing, via spliceosome	Biological Process

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain
IPR044764	DDX52/Rok1, DEAD-box helicase domain

trEMBL

trEMBL term	Description
A0A2Z6MT86	_

SwissProt

SwissProt term	Description
RH57_ARATH	DEAD-box ATP-dependent RNA helicase 57

KEGG

KO	Description	Enzyme
K14779	ATP-dependent RNA helicase DDX52/ROK1	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G09720	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Medicago sativa L.	MsG0780040908.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa004732	_
Glycyrrhiza uralensis Fisch.	Glyur000081s00006770.1	_
Codonopsis lanceolata	Cl_C01234_unscaffolded_00080T	_
Arachis hypogaea L.	AH16G17530.1	DEAD-box ATP-dependent RNA helicase 57 like

Expression pattern