Detail information of Am09G016550.1 Annotation
Gene IDAnnotation
Am09G016550.1 Tetratricopeptide repeat (TPR)-like superfamily protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am09G016550.1mRNAChr096064866360653942+

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF13041.9PPR_21311789.50E-72
PF13041.9PPR_23343819.50E-72
PF13041.9PPR_24374849.50E-72
PF13041.9PPR_25375859.50E-72
PF01535.23PPR1341632.80E-57
PF01535.23PPR5405702.80E-57
PF20431.1E_motif6557171.40E-20
Gene family
Gene familySubfamily
Carbohydrate-Active enzymes FamilyGH28

Gene Ontology
GO termDescriptionCategory
GO:0003723RNA bindingMolecular Function
GO:0043231intracellular membrane-bounded organelleCellular Component
GO:0004519endonuclease activityMolecular Function
GO:0005737cytoplasmCellular Component
GO:0016020membraneCellular Component

InterPro
InterPro termDescription
IPR011990Tetratricopeptide-like helical domain superfamily
IPR045215Pentatricopeptide repeat-containing protein At1g15510-like
IPR002885Pentatricopeptide repeat
IPR046848E motif

trEMBL
trEMBL termDescription
A0A1S3E0W2 _

SwissProt
SwissProt termDescription
PP280_ARATHPentatricopeptide repeat-containing protein At3g53360, mitochondrial

KEGG
KODescriptionEnzyme
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Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT3G53360 Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.MsG0780039471.01.T19 _
Oryza sativa L.LOC_Os06g30940.1pentatricopeptide, putative, expressed
Cucumis sativus L.Csa005027 _
Glycyrrhiza uralensis Fisch.Glyur000081s00006769.1 _
Codonopsis lanceolataCl_chr08_03310T _
Arachis hypogaea L.AH13G01420.1Pentatricopeptide repeat-containing protein At3g53360, mitochondrial like

Expression pattern