Gene detail

Detail information of Am09G016470.1 Annotation

Gene ID	Annotation
Am09G016470.1	nuclear factor Y, subunit B8

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G016470.1	mRNA	Chr09	60509217	60515990	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM09G016470.1
TACATCACAGAAACTTGGTACAGCTTATTGGGTATTGTCGAGAAGAAGAGAGTAGTATGCTTATTTATGAGTTCATGCATAATGGCACTCTCAAGGAACATCTTTATGGTAAGCCTACATGATTTAAATCAAGGAATAGAAGTCCGTATATTGAAGTTTCGCTAACTTCTTGTAGGCCCATTAGTGCGCGGACGGAGTATCAATTGGATTAAACGCCTTGAGATTGCAGAAGATGCTGCCAAAGGTTTATGCTTTACAAATTATAGCACTAATAACACTAATGCATGATTCAAGATGATAGAATTTAATATCCCTTCCCATATGATAAATTACATATTATTAACTGTATTACTCTCATGCTTGTTCAGGAATCGAATATCTTCATACCGGTTGTGTTCCTGTCGTTATCCATAGGGACTTGAAAAGCAGCAATATTCTTCTTGACATACACATGAGAGCCAAAGTTTCAGATTTTGGACTTTCTAAACTTGCTGTTGATGGAGTCTCCCATGTTTCGAGCATAGTTAGGGGGACAGTAGGATACCTCGATCCCGAGTAAGGCCCTTATCTATATTCCCCGAGCTTTTGGATTTTTCTTTGTTTGTATAAATCAGATATTCCCCGCACGCAACTGTTGAGACTAATCTCTCTCGAGCTGAGTAGAACCATATAGACGAAAAAACTCTTTATCAAGAATTTTCCCTGAGCATGTGTGTTTGAGCAAACAAAGTTTATTATTTCTTGCTCATTGTTGAATGACTTATGGTCCAAGTAACCTCTAAGATTGTCTTTAAAACATCCTTTTTCTCTCTATAGGTACTACATTTCGCAGCAGCTGACCGACAAGAGTGATGTTTATAGTTTTGGTGTAATTCTTCTCGAACTCATATCCGGTCAAGAAGCAATTTCGAATGAAAGCTTTGGTGTCAATTGCCGAAACATAGTCCAATGGGTGAGTTTTAGTTTCTCTTCAAACATAGAATGTTGCACAATCGAGAGTATAAAGAAAGTGTATAATTCGAAAATCCTTGTATTATTTTTCGCAGGCGAAATTACACATTGAGAGTGGGGATATACAAGGAATTATTGATCCCTTTCTGCGTAACAACTATGACTTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTGAACCTCATGGACATATGCGGCCATCAATTTCAGAAGTTTTAAAGGAGATACAAGATGCAATATCTATTGAGAGAGAGGCTGAAACATTTAGAGAAGGAAATTCTGATGAGGTTTCAAGAAATTCTTTTCATTCTTCCATGAATATGGGTTCAATGGATCTTGGTAGAGCTGAAAGTTTTCTTTCAATTGATGAATCCGTTGCACAGCCTACAGCGAGATAGATATATAGATATCTCTTGTAAACTAACACAATATTTTCTATTTCTTTCTTCCTCTGATTTTTTTTATGTTTAATTGCATTTTTGTCGTCCACCTTTTTGAATTTGATAATTTTTGTCACTTTATTTTATTATTGGCAATTTTGGTCACCCAATTTTCTCTGATGATTTTGGTCCTATAGTTTTTTAATTGCACTTTTAGTCCACCAAAATCATAGATTTTTTCTAATTTTGGTTCCCAAAAATTTCGGATCTTTAGAAAGTAGGGATCAAAAGTGTACATTTCATGATATACGAGAGATCCAAAATGCAATTAAAAAAATTAGAGACCAAAATCGTCAAAGTTAAGAAAATTGAGGGACCAAAACTGCAACTCCAACGTTATTTTCCTTTTTTCTTTGAGTGTGTAGGCCTTCTTGTTCATACATATTTGTCTCCTGTCGTGGAAATCTAGGAGCTCAAATGTAAACATTTAAATTAAATGAATTTTATTTGATATTTTATTTTTTATTTTTTTAATTTTAATAACAAATATTTATTCTATCAAAGTTGAAATTACTTGTTTGTCAAAAGAAATTTAGAAATTACTTGTAAATCGAATATGATTATTATTTTGATGAAACGGTCCTCTTAATTTAAAATTATATTGCCTTCATTCAATTTTTATTTGTTTTTAAGTTTGTTTAAAAACAAACGAAAGAAATGAATAAGTTTTGTTATTTTTCTTGTAATACTTTAATTTTTTAATACTCATCACATGTATTTCTATCAACAAATAATTAAGAATACAAATTATAAACAAGTAATTAATATGATTTTATATTATTAAAATGATAAATAAAAGAATTTATTTTTTAAGAAGCGACAATGAGTAAAAAAAAACGACCAGACCAGTAAAATGTAACCAGAGTTTGACAAAGAGTAAAAAAGTAAAAAGAAAACGACATCGTATGATAAACAAGCCAAACGGCCAGTCCAAAAGGTGCCTTCATCTAGTACACAGTACACACCTAACACGTGGTCGAATAACACACTTCGTCAGAATCATAAATGACATTCATCCCAAAAACAGAAAATCCTCCTTTATTTTTTTAGTGTATGTTAGGTTTCTTTTGGGTAGGTAGTGTATATATACTTTGGGTTAAAAAAGTTCCATTTTAAGTTTCTAGGCGAGGGGGGAGCGGTAACCAGAATATTTTATTATTATTAAAAAAAAGAGAGAAAGTGAATTAAAAAAGAGAGAGGAGGTTAAGAAAAAGGAAGAAGCGAAAAAGCAAAGGATATGAGAGTGTTTTGTTGCAATAAAAGAAAACGGACGGTGATGATAGGACTGAGTCTCTGATCTCAATCGTCTCCTCCCTCCTCTCTTCTCCAGCGTCCGATTCCCTCACCATTCTCACCGATCTCGCGCCAAATACAAATTCATCTTACCACACTCCCCCACAGGTATCAATACTACCACATACCCTCCAAAATATAACTTCCCTTCTCTTTCTCTCTCTTTCCCTCTAGGGTTTCAAATCGATACATACCTAGGGTTTTGATTTTATTGATCTCTTTAATTTCACCATGTTTTTTCTTCGCCGTGATTCTTTGTTTCTCAGATTAGGTTTCCGACGAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00808.26	CBFD_NFYB_HMF	30	94	9.10E-28
PF00125.27	Histone	16	94	5.00E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Molecular Function
GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process
GO:0046982	protein heterodimerization activity	Molecular Function
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0016853	isomerase activity	Molecular Function

InterPro

InterPro term	Description
IPR003956	Transcription factor, NFYB/HAP3, conserved site
IPR027113	Transcription factor NFYB/HAP3
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072	Histone-fold

trEMBL

trEMBL term	Description
A0AAN9NT61	_

SwissProt

SwissProt term	Description
NFYB8_ARATH	Nuclear transcription factor Y subunit B-8

KEGG

KO	Description	Enzyme
K08065	nuclear transcription Y subunit beta

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G37060	nuclear factor Y, subunit B8
Medicago sativa L.	MsG0180004009.01.T01	_
Oryza sativa L.	LOC_Os05g38820.4	histone-like transcription factor and archaeal histone, putative, expressed
Cucumis sativus L.	Csa005023	_
Glycyrrhiza uralensis Fisch.	Glyur000081s00006756.1	_
Codonopsis lanceolata	Cl_chr05_37720T	_
Arachis hypogaea L.	AH06G14590.1	Nuclear transcription factor Y subunit B-8 like

Expression pattern