Gene detail

Detail information of Am09G015580.1 Annotation

Gene ID	Annotation
Am09G015580.1	eukaryotic translation initiation factor 3A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G015580.1	mRNA	Chr09	57913869	57920556	-

Sequences

CDS:

>Am09G015580.1
ATGACTTCATACTTGAAGCCTGAGAGTGCCCTCAAGAAGGCGGAAGAATTGATCAGTCTTGGGCAGAAGCAGGATGCTTTGCAGACTCTTCACGACCTTATAACTTCAAAAAGATACAGGGCTTGGCAGAAAACACTTGAACGGATTATGTTCAAGTATGTGGAGCTCTGTGTAGACATGCGTAAAGGACGCTTTGCAAAGGATGGCCTCATCCAGTACCGTATCATTTGTCAGCAAGTGAATGTTAGTTCACTGGAGGAGGTGATCAAGCATTTCATGCACTTGTCAACGGAGAAAGCTGAACAAGCCCGCAATCAGGCACAGGCATTAGAAGATGCCCTTGATGTTGATGATTTAGAGGCCGATAAAAGGCCAGAGGACTTGATGCTTAGCTATGTCAGTGGTGAGAAAGGGAAGGAAAGATCTGATCGGGAGCTTGTTACCCCATGGTTTAAATTTCTTTGGGAAACTTACAGGACAGTGCTTGAAATACTGCGGAATAACTCAAAGTTGGAAGCTTTATATGCGATGACTGCTCATCGAGCTTTCCAGTTTTGTAAGCAATACAAACGCACAACAGAATTTCGAAGACTTTGTGAAATCATCAGAAACCATTTGGCCAATCTCAATAAATACCGGGACCAACGAGACAGGCCTGATCTTTCAGCTCCTGAAAGCTTGCAACTGTATCTTGACACCAGATTTGAACAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTTCGATCTGTGGAAGATATACACGGACTAATGTGCATGGTTAAGAAAGTGCCCAAACCATCATTGATGGTTGTTTACTATGTTAAGCTGACGGAAATATTTTGGACATCATCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTCTTTTTATTACAAAAAAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCTTCATCTGTTGTTCTGGCTGCACTTTCAGTGCCTCCCCACGATCGCACTCAAGGTGCATCTCATTTGGAACTAGAGCATGAAAAAGAGAGAAATTTGAGGATGGCCAATCTCATTGGCTTTAATCTTGAGTCCAAGCCTGAAAGCAGAGAAGTGCTCTCAAGATCATCACTGCTTGCCGAACTGGCATCGAAGGGTGTAATGTCTTGTGTGACACAGGAAGTGAAAGACATTTACCATCTTTTGGAACATGAATTTCTTCCCTCTGATCTTGCAATAAAAGTACTGCCTTTGTTAACTAAAATTTCAAAATTAGGGGGTAAGCTTTCCTCTGCTTCATCTGTTCCAGAGGTGCAGTTGTCTCAGTATGTCCCTGCACTTGAAAAGCTAGCTACTTTGAGGTTGCTACAACAGGTGTCTAATGTGTACCAGACAATGAAGATTGAGACCTTATCTCGGATGATCCCCTTCTTCGATTTTTCTGTAGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAATTTCTATCAATGAAAGTTGACCATATGAAGAATGCCGTAATTTTCTGCAAAACGAGTCTTGAGGCTGATGGCTTAAGGGATCACTTGGCGAGTTTTGCGGAACTCTTGAATATGTCAAGGCAAATGATTTATCCTCCTGATAGGAAGCAATCAAAAGTTGGAGCTTTGTTTCCGACTTTGACAGAGATTGTGGCCAAAGAACACAAGAGACTCCTTGCTCGAAAATCAATTATTGAGAAGAGGAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGCGAGGAAGAGTCCAAGAGGTTAAGACTACAGAAAATAACTGAAGAAGCAGAACAGAGAAGGCTTGCTGCTGAGTATGAGCAGAGGAAGAACCAGCGTATCCTTAGGGAGATAGAGGAAAGAGAGAAAGAAGAAGCTCTTCTTTTAGCTCAGGAAGTTGAAAAGCGTATACCAAAAGGAAAGGGGGGTAGAAAGCCTAACATAGAGGCTGACAAAATGACCAAACAGACTTTGATGGAGTTTACTTTGACTGAACAACTCCGGGAGAGACAAGAAATGGAAAAGAAACTGCAGAAAGTATCTAAAACCATGGATTATTTTGAAAGAGCAAAAAGAGAGGAAGCTGCCCCGCGTATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAAGAAACTTCATGAACGTGAACAACAACTAGAGGTTGAACTGAGCAAACAGCGGCATGAGGGAGATCTTGAGGAGAAGAAAAGGCTTGTTCGAATGATGGAGAATAAAGAGATATATCAAGCAAGAGTTGTCAATCATCGCCAAGAGGAATTTGACCGATTGAGGAGAGAAAGGGAGGAGCGTATCTCTAGGATTTTACAGTCAAGGAGGCAGGAGAGGGAAAAAATGAGGAAGTTGAAGTTTTATCTCAGTTTGGAAGAAGAGAGGCAGCAAAAAGTGCGCGAGGAGGAAGAAGCTAGAAAGCGTGAAGAGGCTGAGAGACGAAAGGCTGAAGAGAAGGAACGCCTAGCAAAATTGGCTGAGCAGACTGAAAAGCAGAGGAAAAGAGAGAGAGAACTTGAGGAAAAGGCTGAGAGACAAAGGAGGGAATTATTGTTGGGCAGACCCGCGGAACCAGCTCTCAAGCCTTCTGAGCCTCTTGCTCGTCCACTGGAACCTGTGGCTGCTGCTCCAGCTGCAGCTGCAGCTTCAGAAGCGCCTTCCGGGAAATACGTCCCCAAGTTCCGGCGAGAGAGAGTTGAAAGCACAGGAGTGGCTCCTCCTACAGATCGATGGGGTAACAGCAGTAGCAAGCCCGATGGTGATAAATGGCGCAATGACGATCGAAAAACCTCATTTGGTTCTCTTGGTTCCAGACCTGCCGCCCCTTGGTCATCTTCCAAGACACGTGATCGTTGA

Protein:

Promoter(3k):

>AM09G015580.1
CAGCACTGTTAACGGAAAAGGATTTATGTGTCAAAAATTTGAAAGATAAATGACTTATTTGGGACCAAAAAAACATAAATGACTAATTCGTTACTTTAAATAAAGATAAACGACCCCGAGAGCACTTTAGCCAAAAATAAGTGTATGTTTGGTTACACTTCTGGAGCGGGTAGAATTAATTTTGGGGAGTTAAAAGTGATTTTAGTATGCAAAATTGATGTTCGGATTTTACACCTAAAATTAATTTTATTGGCCTAGAATTGATTCTACTAGAAGCTAGAAATTGTAGCTTCTAAGGTGACATAGAATTGATTCTACTATTACATATTTATGTTTTCCATAATTACCCTTCAATTTTTTTAGTAAAAGTATCAAAATAATAATCGTGTCACATTCAACTCACTTTTCACTAAAATCAATTTTGCAAAGTCAATTCTATCGGAATCAATTCTCATCACCGCAGAATCAAACACACACTAAAACTCCTAGTTGTCTCGTTTTGTCTTGTTTAATTTAATTTTGCAAAGAGTTTAATTTATTTACTCGATATGTGTATTAGTTATAATTGTATTTGTTATAAATCGCTATTAACCTATAGATACTTCAAAAATTGTAAAATTTTAATAAAAGAAAAAGGAAAAAAAAACTATATTTCAACTTGCTTAAAAAATTCGTGTTGCAGAAAGTAAAAAAAAAATCAGTATCTTCTCCTATTCTTAATAATGGAGTAAAGACCGGAAAAAAGAAAATGAAAATTAGTATAAGATAAATATCCCCGTTGCCGCTCTCTGTTGTCGATCTCGTTGCCGGTCTCTTGTTACTGCTCTCGTTGCGTCTTCCGTTGCTGCTCTTGTTACGAAATTATGTATTTTTTCACCAAATCGGTTATTGAGGCACAAACTTTGCATATTTGAATAGTTGAATTTTTTTACGAACACTAAAACATGAAAAAACACACTACTTAGCATCGCGCTTTACATATTTTGTTTTGAAATTATTTTTTTTCACCAAACCGACCACCGAGTAACAAACTTCGGGTACTAAAGTATTTGATATTGAGGAATGAACTTTGAGTATTTGAACAGTTAAATTTTTTCCGAACACTAAAGTATCTCAACACGCTGCTTAGCATCACACTTTACGTATTGTCACAATTTTTTTTCACCAAACCGGTTATTGAGGCACAAAATTTTCATATTTGAATAGTTGGATTTTTTTCCAAACACTAAAGCATCCAAAAAAACACTACTTAGTATCATACTTTACATAAATATGTTATGAATTTTTTTCACCAAACAGGTTACTGAGGAACAAATTCTGCGTATTTGAACAGTTAATTTTTTTCCGACCACTTAAGTACCCCAAAACACACTGTTTTGCATTGCACTTTACAAATTTTATTACAAAACCACTATTTTCTTTCAACAAACTAGTTATTGAGTAACAAACTTTGCGTATATGAACAACTAATTTTTTTTTTCAAACTCTAAAGTACCTCAAAACACACTTGCTAGCATCACACTTTTCATTTTTCACCAATCCGATTATCGAGGAACAAACTTCATATATTTATAGATCCAATTTTTTTCATAAATTTTAATGTACTCTTAAAAATGAAAATAAAAAAAAAAGAAAAAAGGGGGGATGGATGGCATTTTGGCGCCAAAGGGGGAGTTGGAGACTCCCAATATTTATATTCTTTAGAGTAGATTTAGATGTGAAAGATAGTGATAACGGTGAAAAATGTTTAAAAAAGTGATTATTTTGTCTTTTTGTGAGTCTTTTACCAATTTGCTCTAAACATTGATGATGTGTCAAAATTTGAAGAATGTGTAGATTTGGGTATTTGCTAGTGGGTTGTTTGATTATAGATATAATGGGTGTTCGTGGTGCGGTTTGGTTCGGTTTTGAGTCAAAAAACAATCCGAACCGCAAGGTGAAAATGTATGCGGTTTGGTTTTGTTCGGTCGGCTTCCTAAAAAAAATCCAAACCAAACCAATCCAATGCGGTTTGGATTGGGTTTTTGAGAGACAAAACATAATTTAAAATGTAGTTCAAATTGACTTATTTAATCAATATATCTAAATATTACCACTTTTTTTATCTAAGTAAAAGAAATTTTTCTAATTCTATAGTGAGAAGGGACCACGATCTGTTTCTATAGTAAAACAATGAAAATCACTTTTTTGTCATTTTTAAAATTACTTTTTATTAAGATTGGGCTGACTCTGGCCCAAGAGCCCAACCCAACAAACGACAAGACTTGTTGTTAGTAATAGATTGCTCCATTGTCGGCCCGGATCTTTCGTTTTAGAATTGGCACTCGAAACCCCACTCACTCTCCCCTCTCGTCTTCTAGGGTAACCACGGCGCTACTACTGCAACAACTGCGGCCATTCCGAAAATCCTCTTCTCAGGTTCGCACTTTCATATTTCTATCCCTTTCTTCCAATCCTTCAAAACCCTAACTTTCTCTCTATCAGTTTCTGCATGTTCACCAGTGACGGCGCCGTATAATAAAACAGCTTATCTCTTTGTTTATTTAACAGATCCTGATAATCGCGATCCCTTGTTTTTTCTAATCGGTTTTATAATAGTAGTAATAGTCTTTCTTGCTTTGATGATGCTCAATTCATGATTTTATTCGTTGATTGAACGGTTTTAGGCTTTTTGTATAGTCTGATTCAATTATCGTGGCTTGAATCTATTTTTTATTTTTTATTTGAACGCTAATATATCAGTTTTGTTATTCATGGTTAATTCGGCTCAGCTTAGCAAACATAGACAATTTTACTTGATTTAGCAGTTTATGATTATCCTTTGTATATTTAGCTTGTTTTGTTTCTAATCTCCTGAACTGGGCACCATTTTGTCCAAAATTTTGCTTCAAATATCATGTTGTGTTGTCGTTATGGGCCAAAACTTTATTTTATTTTTCTTGCTATTTATCTTTATCTTTTTTTGTTTACAGGGGAGTTTGATTCTACTGAGTTCCCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01399.30	PCI	373	508	3.20E-19

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005852	eukaryotic translation initiation factor 3 complex	Cellular Component
GO:0043614	multi-eIF complex	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0000502	proteasome complex	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR000717	Proteasome component (PCI) domain
IPR027512	Eukaryotic translation initiation factor 3 subunit A

trEMBL

trEMBL term	Description
G7L0K9	_

SwissProt

SwissProt term	Description
EIF3A_TOBAC	Eukaryotic translation initiation factor 3 subunit A

KEGG

KO	Description	Enzyme
K03254	translation initiation factor 3 subunit A

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G11420	eukaryotic translation initiation factor 3A
Medicago sativa L.	MsG0780040856.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa001627	_
Glycyrrhiza uralensis Fisch.	Glyur000979s00026383.2	_
Codonopsis lanceolata	Cl_chr05_39900T	_
Arachis hypogaea L.	AH16G16810.2	Eukaryotic translation initiation factor 3 subunit A like

Expression pattern