| Gene ID | Annotation |
|---|---|
| Am09G014980.1 | breast cancer associated RING 1 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G014980.1 | mRNA | Chr09 | 56502906 | 56508301 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF16589.8 | BRCT_2 | 571 | 681 | 8.70E-15 |
| PF00533.29 | BRCT | 460 | 535 | 1.80E-12 |
| PF13771.9 | zf-HC5HC2H | 340 | 418 | 7.80E-11 |
| PF13832.9 | zf-HC5HC2H_2 | 337 | 415 | 1.50E-07 |
| PF13920.9 | zf-C3HC4_3 | 29 | 74 | 2.50E-07 |
| PF15227.9 | zf-C3HC4_4 | 32 | 61 | 6.50E-07 |
| PF13445.9 | zf-RING_UBOX | 32 | 57 | 1.10E-06 |
| PF00097.28 | zf-C3HC4 | 32 | 69 | 2.00E-06 |
| PF14634.9 | zf-RING_5 | 31 | 71 | 8.90E-06 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003677 | DNA binding | Molecular Function |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process |
| GO:0005886 | plasma membrane | Cellular Component |
| GO:0004839 | ubiquitin activating enzyme activity | Molecular Function |
| GO:0016567 | protein ubiquitination | Biological Process |
| InterPro term | Description |
|---|---|
| IPR017907 | Zinc finger, RING-type, conserved site |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR034732 | Extended PHD (ePHD) domain |
| IPR036420 | BRCT domain superfamily |
| IPR001357 | BRCT domain |
| IPR031099 | BRCA1-associated |
| trEMBL term | Description |
|---|---|
| A0A1S2XSF1 | _ |
| SwissProt term | Description |
|---|---|
| BARD1_ARATH | BRCA1-associated RING domain protein 1 |
| KO | Description | Enzyme |
|---|---|---|
| K10683 | BRCA1-associated RING domain protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G04020 | breast cancer associated RING 1 |
| Medicago sativa L. | MsG0780040771.01.T01 | _ |
| Oryza sativa L. | LOC_Os04g43300.1 | BRCA1 C Terminus domain containing protein, expressed |
| Cucumis sativus L. | Csa001383 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000186s00009877.1 | _ |
| Codonopsis lanceolata | Cl_chr06_35930T | _ |
| Arachis hypogaea L. | AH16G15710.1 | BRCA1-associated RING domain protein 1 like |