Gene detail

Detail information of Am09G014820.1 Annotation

Gene ID	Annotation
Am09G014820.1	nucleolar RNA-binding Nop10p family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G014820.1	mRNA	Chr09	56216373	56218047	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM09G014820.1
ATAAAAATATAACACTTCCCACCAAACTTAAGTCAGAACTCAAAAGTTGTCATAAAATTGAAGTCAAATTGAGACATAAGGCACCTCAAACTCTTAAGCTAAAATAACACATATCAAGAAACATCCTTAATTCCCCTTATCAACTAGTACCCTAGTGATCAGCTAGACCCTTAACCCTTAAATTGTCTAAATATCCTGGAAAATCCCAGCAAAAAAAAGGCTTGCCAAACATAATATCTTCTCTTGCATTAATTTTTGTATACCACATATTACAATTCAGTAAAGGAAATGTACAGCACTCACACTAAAAAATAAGAAACAAATATGAATCACATTTTTTAGAAAAACAAAAATAAATTAATATCAATCATCAGTGTCAGCTATAATTGTGCTCACAAATATCTGTTAGGAAACAGGGAGTGATTTTATCTGCTTATAATTATTAGTATTATTTTTGTTGTTGCTATTTTTGAATTGATTTGATTATGTAAGAAATAATCACAATGAGGATCAATGAAAAAAAACTATACCGCTCTTTCCTCTCTTGAAGGCTCTTCATTTGCTCCTTGTAATGGTTCTCAATATACTGCTTTGCAGCGGCAGCCTTCTGCTTGGTAACGTTGGAAAGAGACGCGTCATCAACAACGGGCGCATTTGGAACTTGGCTTTCGCCATTAAAATCATGATTCTTCCTCGTAGAGGATCTCAGTTTATCTCGCGGCTGAAACTTCTGTAACCAACTTCTCGCTGAATCCATTTTTATAATCGTCAGCTAACAACCATAAACAAACATTACTCTTCCCTTTCTCTTCTGTAGAAATTGATCGCAATAAATCTGCATATGATTTCTACATTAAACGACAAAAATGCAGAAAAAGTAAAAGAGGAAAAAAGAGAGTACAATTTAGTGTCGTTTTGCGATAATTTCTAGGTGCTTTAGATTTGCCTCAAAAAATGACTTGAGAGGCACGAAAGAGTATTCCCGCGATACCTTGATTATTCTGTTTGAAGCATGATCGAAGGAAGAAAACGGTTACAAAAAGAGTAATCGATGAGGGAAAATGTTGAAGGATAAGGTATATTTTTGTTGATGGATTAAATTAAATTAAATTAAAATTGTGTTTGAACTTTGAAGGAGGAAGCTGAGAAATCGGAATGCCGCGTAATTAATAGTTGGGCATAAAAAAAATCCAAGCCCACCATTCCTTTTAGCTTGAGTGATTTTCTTCCAACTAACCTTATGCATTCCTTTTTCACTAGCACCTTTCCATATAAAGCTTCTAATTGAGCTATCAATCTTCTCGTAGATATAATGTGGGAGTATGTAAATTTGCATGTTGGTAGCGTTGCTATAGTACAAAATTTGCAAGAGTAATTCTACCTGGTTTATTCAACAACCTTCCCTTCCAAGCAACCAACTTAGTATCGATTATGTCAAGCACTGGATCAAAGTCTTCTCTACAGAGTCTCCCTTGGTGCATTCGAAACCCCAAGTATTTAGTTATGCAATCTATATACCGCATCCCCAAGTTTTGTGCAACTTGTGTTTAGCGTCTTCAACAACACTTGGAGACATAGATGTGGAATTTCTCTTTGCTCACCTTCATACCTGAAAAAGCACAAAACTCATCCAAGATATTAGTAATAATCTTTGCTCGGCCAGTTTGAGTCTTTGCAAAAAACATGACATCATCAACAAATTATGAACAAATGTGACCGATTCTTTTGTTAGATAAATAATAAGCTCGTTCTTAATTTTCTTAGATAATAGAGGTAGAAGATTTTAAAGTACAACTTTAGTCAGGAGTATTTTAGTAAAAAATTTACGAAGAAGTTTTTAAGTAATTGGGAGTAAGGAGAGTGTAGAAGAAAACCCAATGTAACGTGAGGTAGAGAGTGGGCTTTTGTAAAAGGCTCATGCTTTTCCCAACCCCCTACTCACGACACACCCTATAACCTCCTAAATCCCAAAACTACCTCTAACTTCAAAACACTTATCTCCCACTCTCCCTCCCTAACCCCTTCACACCCCCCTATTCCCTCACTCTCACTCTCCCTCCCGAACCCTAACTCTCTCAACCGAACCCTCTCTCACTTCTCTCGCCATCTCTCATGTTTCTCAGTCACTCCCATAAGGTACTTCTCACTCTTTCACTCTCATTTCTGTGCACCATTTCTGTGAGTTTCGTTTGTTTTTTTCTGTAGAATCACACGGTTCGGTTAAGGGCTTCCAAACCATTTTGGGGACGATGACCTTTTAAAGGGTTCGATTGAGGGCTCCCAAACCCGTTCGGATGGTGCCAACCGAACCACCGTTAACAGAATGCTTGTTTTAAATTGTTTTCTGTTTGAATTTGTCTTAATTTGTTTGCTCTTAACAAAATGCTTATTTTTTCTGTTTTAATTTGTTTTCTCTGTATTTTTCAGTTATGGTCAAGACGAGAGGTGGGCATTCCCAGTCACAGCCTGAGCCTCGTGGAAGGAGGTCACCTCCTACGGTTTCAAACCGGAAAAGGAAGGAGGATGAACGCGCACACCCGAACACCTGCGGCCCGCCATATCCGAGAGCTTTGCCGGTCAAAAATGGGTGTTATATATGGGCCCGCGGTTTTAGTCGGTTCAGAGTTTTTGACCCAAATCCGCCCGAACCCGCCCGATGTCCAGCCCTACCTATTACGACCACACTCCTCGATATTATAGCACCGCACTGGTTGAAATCCAAGAAAAAAATAAAGGACACATTGGAAAGTTTTTATAACTTAAGGGTATTTTTGATTTTTCACACTTTTGGGGAGGGGTATTTTGCGAGCAACAGGGGTGTGTGAAAAAAAATTCCGTGTGATATAACCGAAATGCCCACAATCCTTAAACCCTTTCATTCACCTATTTCGCCTCCATCCTAGGGCAGAGTCTGTTCCTATTGTTTTTCAATCAGGTGCGCTTCTGATAACTTACGACGTCGTCAAAAGCTCTGTTTCCATCTCTTCTTTCGCAGTTACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04135.15	Nop10p	3	52	5.80E-19

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0030515	snoRNA binding	Molecular Function
GO:0031120	snRNA pseudouridine synthesis	Biological Process
GO:0031118	rRNA pseudouridine synthesis	Biological Process
GO:0015030	Cajal body	Cellular Component
GO:0010197	polar nucleus fusion	Biological Process

InterPro

InterPro term	Description
IPR036756	H/ACA ribonucleoprotein complex, subunit Nop10 superfamily
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10

trEMBL

trEMBL term	Description
A0A2U1MEB5	_

SwissProt

SwissProt term	Description
NOP10_ARATH	H/ACA ribonucleoprotein complex subunit 3-like protein

KEGG

KO	Description	Enzyme
K11130	H/ACA ribonucleoprotein complex subunit 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G20490	nucleolar RNA-binding Nop10p family protein
Medicago sativa L.	MsG0780040756.01.T01	_
Oryza sativa L.	LOC_Os02g40514.1	h/ACA ribonucleoprotein complex subunit 3, putative, expressed
Cucumis sativus L.	Csa001102	_
Glycyrrhiza uralensis Fisch.	Glyur001639s00029613.1	_
Codonopsis lanceolata	Cl_chr02_13030T	_
Arachis hypogaea L.	AH03G40280.1	H/ACA ribonucleoprotein complex subunit 3-like protein like

Expression pattern