Gene detail

Detail information of Am09G014810.1 Annotation

Gene ID	Annotation
Am09G014810.1	ribophorin II (RPN2) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G014810.1	mRNA	Chr09	56195658	56206455	-

Sequences

CDS:

>Am09G014810.1
ATGGCCAGAAACATTGCAAAATTACTCATACTACTTTACGCTGTTTCGATCTGCAACGCCGTCACGATTCCTGGCCCAATCACCGATTCTCACCGTTCCGTTGCTTTAGAGCTCTTCGATGGATTGTCTTCCAGTTTAGAAGATGCCTATGAAGCCCTAAGAGTTTTTGAGATTCTTGCAATTGAGAAAAAGTCTGATTTGAGCACAACCACTTGTCAGAAGGTAGTGGAAAACCTTGGCTCATCATCCCCTTTGAAGGATTTGTTCTATGCCTTAAAGGTCAATGACGTATTAAAATGCAATGTTGATAGGGATGTTTTTAAGGGTATTGCTTCAAGACTTAAAGCCACCGTTAAGGATGCAAGTACTTTGATTGACATATATTATACAATAGGAAGTTTGGTTCTCATAAAGGATCAGGCGCCTGATGTTGATGTGCTTCTTGCTGATGCTGATGGGACATTCCATTCAATCAAGGCACTGAGCCAAAGTGATGGAAGATGGCGCTACAGTTCTGATAATCCCGAGTCTAGTACCCATGCTGCTGGATTGGCACTTGAAGCACTGGCTGGAGTGGTCTCATTAGCATCTTCTGAAATTGACCAGTCTAGGGTAAATACGGTGAAAAGTGACATATTGAAGCTTTTTGATAGCATCGAGAAATATGACGATGGAACCTTTTATTTTGATGAGAAATTTGTTGGTGGTCGTGAGCATCAGGGTTCTCTTTCCACAACTTCTTCAGTTATTCGAGGGGTTACATCATTTGCTGCTGTAACATCTGGAAAAATAGATCTTCAAGAGGATAAAATTTTGGGTTTAGCAAAATTTTTTCTGGGCTTTGGAGTCCCAGGAGATACCAAGGACTTTTTCAATCAAGTTGAATCATTAGCTCTTCTAGAGAGCAAAAGGGTCCCCACTCCATTGGTGCTGTCACTTCCTGCAACAGTTTATTCATTGTCCAAAAAAGATCAGCTCAAGGTTAGCGTGAATACAACACTTGGTTCAGCTGCACCAGCTCTGACAGTTATGCTAGTTAGAGCTTTCCACACCGATGCAAAAGATTCAGCTATTATTGAGGGCAAGGAGCTCCAGTATGATCAAAGTAGTGGACTTCATGTCTTGAGTGTTTTCCCAGAAAATGCGGATGTAGGAACCTATGTGTTCGTTTTTGAGATGGTCCTTCATGATTCTGGTAGTGAAAATGTTTATGCTACTGGAGGCGAAATTCATGTGCCAATATATGTCACTGGCATTATCGAAGTTAGCAACGCAGAAATCACAGTTCTTGACAGTGATCTTGGAAGTGCTAAAACCCAGAAAACGCTAGATTTGGCTGGAACTGATGTTTTTTCACTCTCAGCTAACCACCTTCAAAAGTTTCGTCTTTCTTTCCAGTTGATAACGCCTCATGGCCATGCTTTTAAGCCTCATCAGGCATTGCTCAAGTTAAGGCATGAGACAAAGTTTGAGCACGTCTTTGTGGTTGGAAATACCGGCAAGAAGTTTGAGATTATTCTTGATTTTCTTGGCTTGGTGGAGAAATTTTATTACCTCTCAGGCAGATATGACATTGAGCTGACTATTGGAGATGCTGTCATGGAGAACTCTTTCTTGCGGCCACTTGGTCATGTTGAATTAGATCTTCCAGAAGCACCTGAGAAGGCAGCCCGTCTTCCTCCGCTGCTTGTTGATCCTTACTCAAGATATGGGCCCAAAGCAGAGATAACCCATTTATTCAGGGCTCCTGAAAAGCGACCACCTCAGAAACTCTCTCTTGCTTTCTTGATTTTGATATTTTTGCCATTAATTGGCTTTTTGGTTGGGCTTTTACGCTTGGGGGTGAACTTCAAAAATTTCCCTTCTTCAGCAGTACCTGCTATATATGCCATCCTATTCCATTTTGGCATTGCCACAGTTCTATTGCTTTATGTACTTTTCTGGTTGAAGCTGGACTTGTTCACTACTCTCAAAACATTAGGGTTTTTGGGCGCTTTTCTGATGTTTGTGGGACATAGAATTCTTTCCCATCTTGCTTCAACATCAGCTAAGCTGAAATCTGCATGA

Protein:

Promoter(3k):

>AM09G014810.1
GGGGTTCAGCCCGGAGCCGACTTCCACCTCCTTCTCTGACTGTCCAGGTGCCGATCGATGCTGTTCAACAGCTCGTCCAGTAACTAACTCGACAGGCCGAGGCTGATTAGCAGAGAAGCCAACGCTACTCCCACTCTCACGACGATCTCCATCCCGGAAGAGATCGACGAAACGGAAAGGACCTTTTATCAGTAAGATCGACTACTTTCCGGTGCCGAAGCATCATGAGAAACCCCCTGAAGGTTTGTAGATGTATGACGGGACTGGCGATCCTGATCGCCATCTTGATTACTTTGATATGGTGATTCAGTACCGTAACGTTCTTGAGGAGATTAAATGCCGAATCTTTCCCCTCACTCTAGAGAAAGTAGCTTTGGATTGGTTTAGAGCCCTTAAGCCAGATACGATCTCCTCTTGGGATCAATTAGCCAAGCTATTTTCTGCTCACTTCGCCCACTCCAAGATGAAGCCCAAATCTCGGAAGGTATTACAAGCAATTCGGCAAGGAGAAAATGAGTCCCTCCAGGACTACATAGAGAGATTCAACAGAGAATCTGCTCCAAGTCGGAACCCGACCTGATGACCCCCACCATGTGTAAATAAAGACGGGCTAGGGAAGTCCCCGGCAAGCAAAAGGAGAAGACAAAACAAAGAAAAAGACACTAACCTCGGAAGTCGGAATCCGGACGAACCTGAACTTGTTTTCGTGCCTTGACGATCTCACTGAACTGAAATGCAGAGACTCTCGCCACGATACGTTGGATCGGAAGCTCGGTAATCAAAGCACAGACTGACGATGTTAAGGTCGGTACTCAGAGCAATTCGCAGAAAACCAGCCCAATGAAAGAGGTTTGAACCCATATATATATATATATATATATATATATATATATATATATATATATATATATAGTGGGCCAAGAGCTATGAATTGGGCCTGAACCTATAAGGCACGTCCCATCGCTAGCATCTATGACACGCGCGGGAAACGAGGCGCCATAATTACACCAGCCACCATTGAACGACGCGCCTCATCAATGACACTGTTGTCAAGCGCTGGAATTGAAGCATCGCCATAGAAGGGGTACCTCGAGTCACTCGATGCTCCCTTGATGAGTACTTCGAGGCTGGGGGCATGCGCTCATGTGAGTACAAGCCCGGCCTCGGAAGGTCGCCTTACTCGCCAAATTACCAAATTTAAGCTCGTACAGGGCCAGTGTAAACTCGTGTTCTGAGGCTATGCAAAGACCCGAATCTCGGGCATGTTAAGGCTGGGGACAAACACTCACGTGAGTGCAAGCCCGGCCTCGAAAGAATGTCTGGTTTTTCAAACCGTCTCATTCAAAAGTAGCTTAGATCGGATAAAGAGCTCAAGTCTAGTCCGCCTCAAGGCGACCCGACTTGGGGAAATTGTTATGGATTGGGCCACATCCATAATATGGCTAAAGGCCCAATCACAAGGCAGATCCATTAATCAGTGGTTGGGATTAGGGCCCTAGATCTAAGGGTTCCTATTGGTTTCAAGCACACTTTTGACCCTATAAATAAGCATTCAATGCTAGCATTAAAGGTACACACTCTTTCCAACACTCTACCTCTAATTAGTCCACTCTCTGACTTGAGCGTCAGAGTGTCTTTGCAGGTACCACCTCGACTAGGATCGTGACGGAGCTCGGTTGATCAAGACCTACAACTACCAATTATCTCGGACCGGATCAGACCTAGATCTTGAGATACAGTACGGAACAGTAAGCAATTCTATAAAATGTAAAACAAACATAATGTTATTAATTAATAATAATAAAAAGGAGCCTAGGAGTAACAAACAAAAATCGAGTCTAGTAGAAGAAACTAGTCTCTTACAACATGACAAACTAAAGTTTGAATTTCCTTCAAGAGATGTGTCCACATTTAGGCTCTGTTTGACATGACTGATCCGCTAGCTTATAGCGGATTAGTATGCTGTAACTGTTTGACACTACTAATTTTTAGTGTTTTTTCACTAGTTTATAGCGTTTTTTGAAACACTACTTGAAGTAGTGTTTGAGTTTATAGCTTACGGCGTTTAATTTTTTCCTCTTAATTTTACCCTCACTACTTTAACTAAGTTCCTCATTTATCCTCCATTAAATGAATTTCTCTATCATTTTTAAGCATTAATTACAAATGTTTATTTACGTAATTTTATATTTTTAAGCTACTTCAGCCGCTAATTTTACCAAACACTTTAAATTCAATCTGCTGACTTATTCGTTATCAGCTATCCGCTATTACCTCTTCCGCTATAAGCCAGTTTATTTGCTATCCGCTAACTTATTTGTTATCCACTACTTTTTGCCAAAGAGAACATTAATCCTCGAGATTTTCTGAAATATTATTAAGCTTAGGAGTAGAGTAATGTTACTACTGTACATTGACTTGTAATGGACCCATCTTGGCTCCATTTGTTACGGATCAAAATATAATTGATTTTGTTAAATAATTTAGAGATGAGTTTGTAGAGATTTTTAAGAAGATGAGAAATTGTTTTGTGTTTTGTTTAACATATTAAAAATCACTTATTTTAAAAAACTCATTTTTAGAAAAATGATTTTTATGAAAAACTACTTAAAATAAATTCTCATTTGAAGCAGTTTTTAAATTATTTTTAGATTGTCATTTTTTTTAAAAAGCATGAATTTTTTTTAAATTTGTTAGATTATTGGAATTTGATGTATTAAAAATTAAAAACGTAAATTCAGGGACATTTTTGACAATCAAATTTGATGCAATGACCATTGACGTTGACCAAGACGACTTCTAGTTAGTTCAGTTGTACACACTCGAAAGTTGAAACAGAGACTCTCACTCTGATCAGAGGAAGTGGAAGTTGTAATCGCTCTGCGTATGTCCTAAACTCATCTTATCGTTTTCAAGTCCCTAACCAAAACGCTAATCCGCTTCAAAATTTCAAATGCGATTCGCATTCTTGTAAAAGTTCGCTGATTCATAGTTGCAGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05817.17	Ribophorin_II	8	680	1.40E-191

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0030515	snoRNA binding	Molecular Function
GO:0001522	pseudouridine synthesis	Biological Process
GO:0000502	proteasome complex	Cellular Component
GO:0006364	rRNA processing	Biological Process
GO:1990904	ribonucleoprotein complex	Cellular Component

InterPro

InterPro term	Description
IPR008814	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1

trEMBL

trEMBL term	Description
A0A1S2XTL6	_

SwissProt

SwissProt term	Description
RPN2_ARATH	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

KEGG

KO	Description	Enzyme
K12667	dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 2 (ribophorin II)

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G21150	ribophorin II (RPN2) family protein
Medicago sativa L.	MsG0180003813.01.T01	_
Oryza sativa L.	LOC_Os01g68324.3	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed
Cucumis sativus L.	Csa006911	_
Glycyrrhiza uralensis Fisch.	Glyur000186s00009859.2	_
Codonopsis lanceolata	Cl_chr06_36260T	_
Arachis hypogaea L.	AH16G15500.1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 like

Expression pattern