Gene detail

Detail information of Am09G013640.1 Annotation

Gene ID	Annotation
Am09G013640.1	Small nuclear ribonucleoprotein family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G013640.1	mRNA	Chr09	52625836	52628972	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM09G013640.1
TCTGCTCTTCAAAAGAATCAGACATGGAAACTTGTCAAGAAACCTGTTGGGACCAAATTGGTTGGATGTAAATGGATCTACAAAGGAAAGGAAGGAAACTCTGATAAGGATCCTCCTAGATACAATGCACGACTAGTTGCAAAGGCTACACTCAAAGAGAAGGGATTGATTACAACGAAATATTCTCACCTGTGGTTAAGCACAGCTCAATCAGAGTTGTCTTAGCACTTGTGGCCCACTTTGATCTCCATCTTGAACAAATGGATGTCAAAACAACATTCCTTCATGGTGTACTTGAAGAAAAAATATATGGCTCAACCAAAAGGGTTTGTTGAAAAAGGAAGTGAGAACTTGGTATGTTTGCTGCAGAGATCTTTATATGGATTAAAGCAATCCCCTAGACAATGGTACAAAAGGTTTGACAATCACATGTTGAACATCAAATTCAAGAGATGTATTAGTGACAGTTGGGTATACTACAAGCAAATAGATGGCCACAACTACATCTATTTGCTCTTATATGTGGATGACATGCTCATAGCATGTAAAGACATGAATGAGATCACTAAACTCAAGAAGATGTTAAAGGAAGAGTTTGAAATGAAAGACATGGGTCAAGCAAAGAGAATTCTAGGGATGGAGATTAAAAGGAGACCTGATGGCAAAGGCATTACAGTGACACATGAAGCTTACTCCAACAGAGTGGTAAATCGGTTCACTATGAATGAGTCAAAATCATCAAACATTCCTATTGGAACCCAATTTAAACCGTCACAAGAAGATTGTCCCCAAACTGAGCAAGAAGAAAGTCAAATGAGCAAGATACCTTATGCTAGTGGTGTAGGCAGCTTGATGTATGCCATGGTCTGCACCAGGCCTGACTTAGCTTATGCTTTGAGTTTGGTAAGTAGGTATATGTCAAACCCAGGTTTGCAGCACTAGTTGGCTGTCAAACACATACTGAGATACTTAAAAGGAAGTGTAAAAGTAGGTTTGAACTATACCAAGGATAACTACAATTCAGATGGAGTTGTGGGGTATGTGGACTCAAACTTTGCAGGAGATAGGGATAAGAGAAGGTCCTTAACTGGGTATGTATTTACTCTATATGGAAATACAGTAAGCTGGAAAGCCTCACTGCAGCATGTGGTGGCTCTTTCCACCACAGAAGCTGAGTACATAGGAGTAACAGAAGCTGTAAAAGAAGCATTGTGGCTGAATGGATTGGTTAATGAACTTGGAATAACACAAGACCATGTTAAGGTCTATTGTGATAATCAAAGTGCTATACACTTGTGTAAAAATCAGTCCTTCCATGAAAGGACCAAGCATATAGACACAAGGTTGCATTGGATTAAGGATGTCATTGCCAAAGGCACTGTGCAAATTCACAAAGTGCATACAGCAAATAATCCTGCAGATTTCATTACAAAGGTAGTACCATTAACCAAGTTCAAGCACTGCTTGAACTTGTTGAATGTTGATAAAGGTTAATGATGAATATTGGATCAAGCTCTCTGTTTGAAGTCCTGAATTGAATCAAAGGTATTTTGTGTATGCCAATGTGGTGATTGTTGATGTGGCATACACATAGGATCAAGGTGGAACCTCTATGCTGATGTGGCAAGTCAACTCGTGGACTTCAGTTGCTGAAGAGAATGGAGTTTAAGTTTGTTAAAGAAAACTGTTTCTGTTTTAAGTTAGAGTTGTTAGCTTTCTCTTGTATTTTTTCTGTTAGCTCTCCCTCACTCTATCTGCTGCATTGTATATATAATAGATAGAGCCAGGCTGTTAGAGGATGAATCAATTAGATCTTGTACAACTGGGTTTGTGTGGAGAGAAACACTTGGGGAACCGAGGGTATAGGGCAAGTGAGGGGGAAACAGATACAGGGAAATTGTATTGTATATTCACTTGATTATTTGATTCAATGATATGGATTCAAGCAATTGCTTGATCCCCCAGACGTAGGTACCATCTGGTGCTGAACTGGGTGAACAAATTCTTTGTGTTCTTGCGTTTATTTCCATTTCAGTTTTGCAATTTCGTTCGTTTCAAATTAGGGTTCTATCGAATTGGGATTATGTGTTCTTGTGAATCTTGGTCAATTCATCTCTGTTGTTGTTAATAATTCCAACATGAACAACCATAGCCATAACTCACAAAACAAAATAGAGAGCAACAAAGGTCAAGGAACACAAATTGAGTGCAAATTTATTGCATGCTGCATCTAAGAGTCGAGAGGAAGATGAACTAGATTAGAGTTTGAGAGAGGTGAGAGGGGCACAACATCCTCTAGGATTTTTAGAGTAGAGCAAGCTATAATGAGTTACAACTATTTTTTTAGAACAATACTGCATTCAGGGTATTTCATTAATCCTGGGCTAAGCCCAAACCAAAGAGACAAACAGAAATAACAACCACAACTACAAAAGGCACTAGATCAGCCCAACTATCCTACATGACCCGAAAATACAACCCAACCTAGATCTGACAAAGCAACACAACCACCACACCAACAACTTACACTAAAACGGCAAAACAATAATTGGGAAGACATAACTCCATTCTACAGCAAACCCTAAACGACAAAGTCATGCTAGATCCTCCGATCCAACTTCGATTCCATATGCAATTCGATTAGCTACCACATACAACTCTAAACATGATGTTTTGTTTATAAAAATATCTGAGTCTTAATGACTAATCGGGTACGGATTTCGCTAGATCTATTTTACCCAACCGAACCGCCTAAATGTAACCACGAGCAACCCGTTTTCTCCCTTGATGACCCGTTGACCCGATTATTTATTTTTTTCCCCAACAATAATTTCTTGGGCTTTTCAGTCTTGTCGGTTTCAGAACGGGCCGGTGATCTTTTCCAGCCCTACTTAAACGCTACTTTGGTTTTGAGCCCAAAAACTCTAGTTGTGCTTGTGCCGCCATTATTGAGTATCCACCGTCTCTCTGAGCTTTCGTCCTCTCCTCTTGTGCGCCACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01423.25	LSM	5	69	1.50E-18

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0097526	spliceosomal tri-snRNP complex	Cellular Component
GO:0016607	nuclear speck	Cellular Component
GO:0005730	nucleolus	Cellular Component
GO:0035194	regulatory ncRNA-mediated post-transcriptional gene silencing	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR034102	Small nuclear ribonucleoprotein D1
IPR001163	Sm domain, eukaryotic/archaea-type
IPR047575	Sm domain
IPR010920	LSM domain superfamily
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3

trEMBL

trEMBL term	Description
I3SQE6	_

SwissProt

SwissProt term	Description
SMD1B_ARATH	Small nuclear ribonucleoprotein SmD1b

KEGG

KO	Description	Enzyme
K11087	small nuclear ribonucleoprotein D1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G02840	Small nuclear ribonucleoprotein family protein
Medicago sativa L.	MsG0180003991.01.T01	_
Oryza sativa L.	LOC_Os04g39444.1	LSM domain containing protein, expressed
Cucumis sativus L.	Csa020822	_
Glycyrrhiza uralensis Fisch.	Glyur000158s00011367.1	_
Codonopsis lanceolata	Cl_chr04_52680T	_
Arachis hypogaea L.	AH16G02350.1	Small nuclear ribonucleoprotein Sm D1 like

Expression pattern