Gene detail

Detail information of Am09G013620.1 Annotation

Gene ID	Annotation
Am09G013620.1	nucleotide binding;nucleic acid binding;RNA binding

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G013620.1	mRNA	Chr09	52559181	52570603	-

Sequences

CDS:

>Am09G013620.1
ATGATTAGGTTATTGGTGTGTGTGTCCAGGTCAAGGATATGTGTGAAGAATCTCCCCAAATATGTCGCGGAGGATCGACTAAGAGAATTCTTTTCTCAGAAAGGAGAAATCACTGATGTCAAGCTTATACGCACGAAAGATGGTAAAAGTCGTCAATTTGCTTTTATTGGATTTCGTTCAGAAGATGAAGGTCAGGAAGCTATTCGATATTTCAATAGATCTTACCTTGACACGTCTAGAATTATTTGTGAGGTGGCTCAAAAACTTGGTGATGCAAATCTTCCTCGTCCACGGAGTCGACATTCAACAAAAAAAGACAATAAGGCAACCACCCCAGATGTGAACAAACACGCTGGAGCTATAGGGCAAGGAGATAATTCTAAAGACATTGTTATTGATGAGTCGCAGCTTCAAGATTTTATTCAGGTCACGCAACTTCGGAAAAAGTCTAAATTTTGGGCAAATGATACATCAATTGTATCCAATGTTGGCAACAACCTTGCAATATCAAATAAGGAGAGAAAAAGTGCAATGGATGCAGTCCATCCTATCTTAGGTACAAGCGTCTCTTCTGCAGATGAAATTTCAAATAATCCTGAACCCAATAAGTCACGTGAGCTTGAGCATGGAGTAATTTCTGATATGGATTATTTCAAGAGTAAAGTGAAAACTGAGTGGTCTGATTCTGAAAGTAGCGGCAATGGAGATGACAGTGACAACAATGATTCGGCGTGCACCGATGATGATGCCAATCATAGTAATGCCAGCGATCACGATGGAAATTGTAGTAATATCCCTTCTGAGAGAACCTCGAAAAATGGTGCTCAAGAGATGGACCTAGAGGGCCAAGAAGACACTTCTGGAGAGGATGTTGCTAATGATAAGGCTCAAGTGAATCCAACTGAGGAAAGTGGCCAATTACCAAATCCTGAAGATGAGAAGGGAGTTTTTGAGGCCTGTCGACTGTTTGTCCGTAATCTGCCATATGGAACCACTGAGGAGGAACTGGAAGAGCATTTTAGTCAGTTTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGAAAAAGAGACAAGGCGATCCAAAGGAATAGCTTATGTTCGTTTTTCAGCCCCAGAATTTGCAGCCAGGGCACTAGAAGAGTTGGACAATACAATTTTCCAAGGAAGATTGTTGCATGTTATGCCAGCTATACAAAGAACTTCAGACAATGGAGAGAAGAATGTCTCCATGGACAAAGGCTCTAAAACTCTCAAACAACGAAGAGAGGAAGAGAGGAAAGCAAGGGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGGGACCTGATGCGGTTGTGGAAAACATTGTTCGGAAATATGGTGTTAGTAAAAGTGATTTACTTGGCCGGGAAGCTGACGATCCTGCTGTGCGTATTGCTCTGGGGGAAACTCAAGTAATATCTGAGACAAAAAAGGCATTTAAAAATGCTGGAGTGAATGTTGAGTCGTTAGAGGAGTTTGCTAATGGTAAATTTGATGGCCTGAAAAGAAGTAACCATGTGCTTTTAGTGAAGAACTTGCCCTATGGTTCTACGGAAACTGAACTTGCAAAGATGTTTGGGAGATTTGGTAGTTTGGACAAAATAATTCTCCCTCCAACAAAAACAATGGCCCTGGTTGTTTTTCTTGAAGCAGCAGAAGCTAAATCAGCTTTGAGAGGTTTGGCTTACAAGCGTTTCAAGGCTACTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCCAACATCTAAAATTAATGAAACGAATAGTGGAATTGGCGAAAATGATGTCAAGCGGCTGATATTGGAGCAAAATGTGGAAAAAATATCAGGCGTGGACATTGATCCAGACAGAATAGAGGCCCGATCACTGTTTGTCAAGAACCTAAATTTCAAGACAACCGACGAGAGTTTGAGGAATCATCTTAGTGAACACATGAGAGACGGAAGGATTTTAAATGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCCATGGGGTTTGGATTTGTTGAGTTTGACTCCCCGGAGACTTCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGACCGTCATGCACTTATTTTACAACATTGTCATGGCAAGAGTGATGGGAAAGTACAAAAGACAGTTGAGAAGGACAAGAGTTCTACAAAATTGCTTGTAAAAAATGTTGCTTTTGAGGCAACTGAGAAGGATTTGAGACAATTGTTTAGTCCGTTTGGTCAGATTAAAAGCTTGAGGTTGCCATTAAAAATTGGAAGCCACAGAGGCTTTGCTTTTGTTGAGTATGTTACTCAACAGGAGGCACAAAATGCTCTCGCAGCACTTTCAAGCACCCACTTGTATGGCAGGCATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGACATGCGAGCTCGAAGCGCTGTTCAATTTAATGAAAACAATGGATATGGTGATGCAACAAAGATGTCCAGGAAAAGGAAGCTCATCAGTACCTCAGGTGAAGGAAATATGAAGTTTGAACTTTGA

Protein:

Promoter(3k):

>AM09G013620.1
AAAGTTAATTCCGTTTTTTAAAAATTATGAAAACGAATTTAGGTTTTATTCAATATATACGACGGCAAAATTTTGGAGGAAATGGATTTACCTAACCAAACTTAAATCTGTTTTGTTATTTTTTCAAAACGATTATATGTGGTTTATGTAAATCCGTTAGTAACAAATTTATTAGAGGTATTTTTGGAATAAAATTTTTTGTGGGGATATAAAATGAAGGTGTGGGTACAAAAAAAACCCTTATTATTAACGGGAGTACGAGAGGTCTCATTAAAATCAATAAGATAAATTCTAAGATAAAAGACCTAAGAAGGAAAAAAAAGTAACCTCAAGCAAAAGAGAGAGCAAGAGAAGCAAGTTGTGATGTCAAAAGAAACCCTAAAACGTAAGCTGAAGGGGCAGAACAGGGCAGCAAACAAAAAGAGCTTCCTGAAAACCGTTAACCGACGTAGGAACTCGCCGGCAAACACAGGTTTTTTTTTCTTTTCCTATTTCTCCTTCTTCTCTCTCGGCGCGGTCTTGTTGCGCATGAAACGCGCATATCTGGTTGCGAGTGCGGCTGCTTTGGCCGCACCCTTAAACAGTAGCGTCGAGCTGCCGCTCCGCACTGCTCCGACGCGATAGCACCGCAAATTGACACTGTTGACAACTATTTCGACGACCTAATGACTCACTTGTTCGACAAGTGATCCATTGTTTGACTCTGATAACATTCATCAATAGTTCCACTCAATTTCTATTTTTTCCCCAAATATTTTATTGGTACAGTTTTTTAGAGATGGATGTATAGATACTTGGTCTGCAGAGTAATCCATATAACTTGTAATACGTATTATGTAAGACCAAGTAAAATTCATGAGGGTTTAAATTCAGAAGTAAGAAGATTCGTCGTTGGTTGAGGACGGTGGAAGCGCCGTGCTGGTTCGCAAAAGCGGTGGAAGCGTCGCGCTGGTCCGTCTCTGATTTCGGGTCAAAACGCTGGGTTTCGGGTACCACTTTGCAGTGCGGCTAGGTTGAAGATGAAGTTACACGAAAAAACCCCTATTTCTCCAAAACGCTGTGTTTCATTAAGGGTACTTTTGGTATTTTCGGGTATTTTATATAAAAACGGTGCGTTTCATTAAGTGAAATGGAAAAACCCTAAGTTACTATTCTTCCCTTTCCTAACGCAAGGATTTGCGAGAACGCAACCATCACCTCTGAGCTTTCCTCATTCTTCTTCCCCATTCACGCTGCTGCTGCTGCCGCCTTTCTCCTTCGCAAACTGCTTAGTCTTCCATTCACGCTTCTGCTTCGTCTTCCATTCACGCTTCTGCTGCTGCTGCATTGTCTCTTCCATTTGTTTTTTTCTCTACAAAATAAAATAGTGGTATCGCTTTATTCTCTCAGTTCTGCCCTGTTTTGTGCTCTGTTTTATTTCACAAGGTTTGGCTTTTGACACTTTTATTTGTTTAAAACTTGTGTTTTCATTTGTTATTTGGAGTTGTTATTTGTTGAGTTGTGGTACTTTGAATTATGAATGACTTTCTTATTAAGATCTCGAATTGAAGTTTATTTGTGGTGTTTCATATGCATATGAATATATATATATATATATATATATATATATATATATATATGAATTTATATGTACATAAATAAGTTTGTAAAATATGTAGACTCTTACGAATCATGTTATGACTCTATGAGTTACGATTCTTAGATCCCCTCCCGTGTTCAGGTAGAAACTCGAATTTGACTACCCTGAAGAAGAGGTCCCTTCTTCCTCTTCTCATATGGGGAAATACACTGACTCTGTCATATACTGGCTTGCACCAGCTCCCATTGCTGCTGTTAGTGGAGGCCCTATAAATATGCCTCACTTTTTCTGTTTTTTTTTATAAAATTAAATTTGGTTGCTTCTTACTTCTATGTAGTTGTCCTGGATTGGATTCTCTTACATATCTGTAATTATTCAAAGACCGCGAATTTGAGAGAATAAGATAAAATCACTCATTTATTTAATTTATTTTTTAATTTTTTAATAGAGTTCATTAATTAAGTATGAGTGTATGACTACCCCTTTAATTTTTGTATTTTTTATTTATTTTGGGTATTTATGTATACTGCCTCAGATTTATATATACTACTCTCTAGTCTTCACATTAGTGGCTGTCCTGTGGTTTTGGGTCCGGTGCTCCATGCCGCTATCCGGGATTAACTACCTAGCCTGACTCCATGCCTATATAGATGGAGAGATTCTTAAATTCATTTGTACCTCTACTCCTCGCTGGTTTAAATTTGTATTGTTATTGTTATGGTGCTTTCACCGAAAGTATTTTAAAGGGTATTAATTAGTTTACTCACTCTTTCTTGATAATTACTTTTTTTTGGCATATGCATAATTGTTCTGTAATTGCTTTTATGTGGTGATCCTTTGACGTTGATCTGTTAGATTGGGGCGAGGTTATATCAATGGATATTCTGTATAGTAAACTTGTGTATTGCATGATGATTGATTCTTTTCTTTGTCACAGACACATCCACCGCAAGCTTTGTCTATATTAAAGTGCAACTGTGCAAACACAGAAGGAGGAACATGTAAGTGCAAACGTGGCATTCATTATTGTTAGAATTCATAATGCTGATTAGCTAGTGAAAGTGATAGAAAAAGGGGAGAGAATTTGAGAATCTGAAAGATGTATATTCTGTATTCTGAAAAACTGAATAATAGTTAGATAACTAGATATTGATAGGCTAGAGCAACTGTTACAACTGTTTTGTAACTGTCCGATTTTGTTAATACCATAATCCAACGGCTTCACTGCCAGAAGGTTCTACACTTAAGCGTAACCAATTACAAGACCAACTGCGATGAATACAAAGCATAAATAAGCATGGAAATATGAAGCATAAATTCAAGCAGAAACATAAGCACAGAAGATATCCTTCCAATTATTCATCTATTTTCTGTCTTTATTTAATGATAAGACACAATGAATCAGAACCAAAACATGCTAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	13	80	8.30E-81
PF00076.25	RRM_1	322	392	8.30E-81
PF00076.25	RRM_1	517	578	8.30E-81
PF00076.25	RRM_1	635	709	8.30E-81
PF00076.25	RRM_1	735	802	8.30E-81

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:1990904	ribonucleoprotein complex	Cellular Component
GO:0005737	cytoplasm	Cellular Component
GO:0048026	positive regulation of mRNA splicing, via spliceosome	Biological Process
GO:0070013	intracellular organelle lumen	Cellular Component
GO:0043232	intracellular non-membrane-bounded organelle	Cellular Component

InterPro

InterPro term	Description
IPR035979	RNA-binding domain superfamily
IPR003954	RNA recognition motif domain, eukaryote
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
A0A1S2XS19	_

SwissProt

SwissProt term	Description
MRD1_CANAL	Multiple RNA-binding domain-containing protein 1

KEGG

KO	Description	Enzyme
K14787	multiple RNA-binding domain-containing protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G19610	nucleotide binding;nucleic acid binding;RNA binding
Medicago sativa L.	MsG0780040704.01.T01	_
Oryza sativa L.	LOC_Os04g52200.1	RNA recognition motif containing protein, putative, expressed
Cucumis sativus L.	Csa020362	_
Glycyrrhiza uralensis Fisch.	Glyur000158s00011366.1	_
Codonopsis lanceolata	Cl_chr08_37680T	_
Arachis hypogaea L.	AH04G02140.1	Probable RNA-binding protein 19 like

Expression pattern