Gene detail

Detail information of Am09G013560.1 Annotation

Gene ID	Annotation
Am09G013560.1	debranching enzyme 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G013560.1	mRNA	Chr09	52417298	52420284	-

Sequences

CDS:

>Am09G013560.1
ATGACAAATCTGGCATCATCATTCTCATTCTCAGTGATTCCCGTAAATCAGCAGCATAATTACGGAACCAAATGCTCCTTCTATCACAATTCATGTTTCCAAAGGAAACTTGTTAGTAGGAATTTGCAAGATCTCATTAACCCCTTTTCGCAAAACCTCACTTCAAAACTGTGCGCCATATCTCGTTTGTCTACGGAGCAGCAACTCACTCCTTTAACACAATCCGAAGACCTAAAAACGGTATTGCCTTATTTATTCAGAACAGAAATCGGTAACGGTTTGGTTAGAGTTTATGTAACAAAGAAAAAAGTTGTTTATTCTGTGTATATTGAAATTGAAATTGAAATTTCTTCTTTGGGGTTAAGGAATGGTGAAGATGAAACAATGTTGTTGTGTTGGGGTGTGTATAGAGATGATTCACTGAGCTTGAATGTAGGAAAAGGGCTTAATGTGAGCCCCTTGATGCAAACTTCTTTAGGAAAGTTTGCAATTGAATTGGAATTTGATGTTAAACAAGTTCCTTTGTACTTGTCTTTTCTGTTGAGATCTTCTAGGTTTGAAATTAGAAGCCATATGAAAAGGAATTTCTGTGTGCCTGTTGGTTCTCTTCCAGGGTCCCCATCTCCATTGGGGATCTCTTTTTCCCCTGATGGGTCTATGAATTTCGCAGTTTTCTCAAGACATGCAGAGAGTGTGGTTTTATGCTTGTATGATGATAGTTCTGTGGAGAAGCCAGCTTTGGAGCTTGATCTTGATTCTTATGTTAATAGGTCAGGTGATATCTGGCATATCTCTTTTGAGAGTGCATGGAATTTTGCGAGTTATGGTTATCGCTTCAGAGGAGCACTTTTCCACAGGAACAAGGTTAATGGTTATGCTGTATTGGATCCCTATGCTAGGGTTATTGGTAATTCTTTTCCTAATGGTAATGGGTTGGTGAAGAACCTTGGATGTTTGAGAAAGGAACCTGCTTTTGATTGGGGCGATGATCGATATCCGAATTTGGCTATGGAGAAACTAGTGGTGTATAAGTTGAATGTGAAGCGATTCACGGAGCATAAGTCCAGCAAACTGCCCAGTGATTTGGCAGGGACATTTTCTGGTTTGGCTAAAAAGGTACAACATTTTCATGATTTGGGTGTGAATGCTGTTCTGTTAGAACCTGTTTTCACATTTGATGAGGAAAAGGGACCTTATTTTCCTTGTCATTTTTTCTCTCCAATGAACTTTTATGGACCATCTAGTGGTGGTCCTGTATCTGCAATCAATTCTATGAAAGAGATGGTGAAAACTATGCATGCCAATGGGATAGAAGTTCTCATGGAAGTTGTTTTCTCCAATACTGCTGACACTGATGCTCTGCAAGGAATTGATGACTTATCTTACTATTATGCAAATGGGGTTGGTGATTTCAATGTACACAGTGCTTTGAATTGTAATTATCCCATTGTGCAAAATTTGATTTTGGATTGCCTTCGCCATTGGGTAACCGAGTTTCACATCGATGGTTTCTCTTTTGTAAATGCATCACATCTGTTGAAAGGGTTTCATGGAGAATACTTGTCTCGGCCTCCTTTGGTCGAAGCAATTGCTTTCGATCCGATACTCTGGAATACTAAAATCATTGCAGATTGTGGGGATCCCCATGACGTGGAAGCGAAGGAGACAACTCGCTTTCCTCATTGGATGAGATGGGCTGAAGTAAATGCAAAATTTTGCAATGATGTGAGAAACTTTTTAAGAGGTGAAAATCTTATTAGCAACCTTGCAACAAGACTTTGTGGGAGTGGGGACTTAGTTTCTGATGGAAGAGGTCCTGCATTTTCTTTTAACTACATTGCTAGAAATTTTGGACTTTCACTTGTGGACTTGGTCAGCTTCAGCAGTGATGATCTAGCAGCAGAGTTGAGTTGGAATTGTGGAGAAGAAGGACCTACTAATAAAACCACTGTCCTCGAAATACGACTCAAACAAATCCGCAACTTCCTCTTCATCTTATTTGTGTCATTAGGAGTACCTGTTTTGAACATGGGAGATGAGTGTGGTCAATCTTCTGGTGGTTCTCCTGCCTATGATGACATAAAACCCTTCAATTGGGCTGCTTTGAAAACAGGTTTTGGTAAACAAACAACACAATTCACTTCCTTTTTGATTTCATTGAGGACGAGGAGAAGCGATCTTCTTCAGAGTAGAAGCTTCTTAAAAGAAGAAAACATTGAATGGCGTGGAAGTGACCAGACTCCACCAAAATGGGAAGACCCCTCATGCAAGTTTCTGGCCATGACTTTGAAGGCTGAAAAAAGAGAGTTACAAGAAAACTCTGTATTTTCTGATATATTAGGGGATTTATTCATTGCTTTCAATGCTGATGATAAACCAGAAACTGTAGTTCTACCTTTACCTCCAGAAGGTATGTCATGGTATCGTTTAGTAGATACAGCTCTTCCATTTCCTATGTTTTTCTCAACCAATGGTGAACTTGTACCTGAGCAAATACCAGGTTTGTCTACTTATCAAATGAAGCCTTATAGCTGCACTTTGTTTGAGGCAAACAATGGTAACAGTTAG

Protein:

Promoter(3k):

>AM09G013560.1
GACTCTCTATATTGGGAGAACAACCCCTAGCTGTTATCAACATATATAATTTTATGTTTCACAATCTGATTTCTTATCTATATAGACAGGTTTTCTGGGTATCTTGGGGAATAAAGTTGATGCTATTGATTACTACACTGCAAAGATTGATCAGTTGAGCGAGAAAGTAAGTACTGATTTCAGTCTCGCTTTTGTTAGCATTTTTTGTACAGGTTTTTTGAGCAAGTAAGATTCATTTTGTTCATTTCAAGCAGGAAGCTGAAGAAAGAGAAAATGTTATAAATGATCCCAATGCTGTTATTCCTGCAGCATTTGTTTCATTTAAAACTCGATGGGGGGCTGCTGTGTGTGCTCAAACTCAACAAACTAGTGATCCGACTATTTGGCTGACAGAATGGGCTCCTGAGCCTCGGGATGTCTATTGGGAAAATCTTGCAATTCCATATTTTGACCTCAATATTCGAAGATTGCTCACCACTGTCTCTTTATTTTTCCTCACTTTCTTCTTTATGATACCAATAGCCTTCGTTCAATCTCTAGCTAACATTGAGGCAATCAAGAAGGTCCTTCCTTTCTTGGAACCAATAATTGAAAAGTAAGTTATGAATAATCCATCAATCAAAAGTTGTACCATATGAATATATTTAAGCCCTTTGTCATATTGTTAAAGAGAATGATGATTAAAAAGAAGGATAATGGAATGCATAGTGTCTTCCTAGGTTATTCTGTGGAGTAATGGAGTTCCTCATTGCAGGCCCTTAGTCAAGTCTGTCATTCAAGGATTTCTGCCAGGGCTAGCATTAAAGATATTTCTCATAATGCTTCCAAAATTGCTAATGACGATGTCCAAAATGGAAGGTTTTACATCGTTTTCGGGTTTGGAAAGGAGGTCAGCTTCCAAATATTATTTGTTTGTTCTAGTAAATGTGTTCCTTGGGAGCGTTGTAACAGGCACCGCATTTCAGCAACTTGAAATGTTCATTAATCAGTCTTCTACAGAGTTCACAAAAACTGTTGGCAGTACAATCCCCATGAAAGCCACATTCTTCATAACATACATAATGATAGATGGATGGGCTGGAGTAGCTGGAGAGATCATCAGGTTATCTACATTAATTACGTTCCACCTCAAAAACACATTTTTGGTAAAGACGGAGCAAGACAGACAGAATGCTATGGATCCCGGTAGTTTGGAGTTTGCTACATCTGAACCTCGCATTCAGTTATATTTCATGTTAGGGCATGTATATGCTCCAATCACACCTTTACTTCTCCCCTTCATTGTAGTCTTCTTTGCTTTTTCTTACATGGTCTTTAGGCACCAGGTGAGTTCTCGATAGAGTTAATTACTGCCATATGAAGCAAATAAATATCATTACGTTCTTTATAATTAATGCTTGATTGCCTTTTCTTTTTGCTGTCACAAGATTATCAATGTGTACAACCAGCAATACGAGAGTGGAGCAACTTTTTGGCCAGATGTCCATCGTCGAGTAATTATAGGCTTGATTATATCTCAATTTCTTCTCATTGGATTGCTTAGTTCAAGAGGTGCAAATAAGTCAACGCTTTTGCTTATTGCACAACCTATCTTGACCATCTGGTTCCATAGATATTGCAAAGGGCGCTTTGAATCTGCATTTGTAAAATTCCCACTAGAGGTTGGTTAAGCAATAACCATATACATATACTAAATACAAAATCAATTTAGCCTCGTTGATTAACATGACATATATGAAATTTGATGACAGGATGCGATGGTGAAAGATACACTTGAACGTGCCGTTGAACCAAACTTGAACCTGAGACTTTATCTTCAGGATGCATACGTACACCCAGCTTTTAAGGGCGATGAGTTTCAAAAACCAGTGATCATTGATGACGAAGAGGAGAATCCTCTTATTCAGACAAAGAGACCTCGTCGGAGTAGCAAGCCGGAATCTGATAATGAAGCCGGCAGTGACGAATTAGTTGCTAAGGTATAGTTTCCATTTTAGATTCCAACAAACCATGGAGTATTACTGGTGTGAATGAGAATCCACCATTTTTAGCAGAAATTATAAGATGCAGCAACCAGCATGCCTACAACCAATTGCACCGTTCAGACTCTTCCAGCCCTAAGTAGTTTTTTTTTGGTGGTATTAGCCCTAAGTAGCATTCTCTTACTGATTTTTTTTTTGACAGGATTCTGTTGCTGATTATTTTCTTTTTGTTAATGATTATGTTGCTGATTAGTTGCCTACAAGAAATGTTATTTCTTTTTAATCAGTACAAGAAATGTTATTTGTTGTGTGTATATATATACACGGCTGTATGTATTTTTGTATTTTTTCCTTTGTAATTAACATAGAAAATACGGTGTTCAATATAGATAATCAGTGAAAAGTATGTACATTTGTTTAACTAAACTTAAAACTTTTTACACCCTACTTTTTATATTAACATGCTGCGCAAGTGGTAAAATAAGTTGCTTTAAGAGAATGCGACGTTGAAAATTTATTAGAAAATTTATTTTTCTAATCATAAAACAATTCCAATGAAAACCAGTTTTGACAGGGACAGCGAGCAATACTTTTCTTCTTTACAAAAAGTTTTCTTTTTTACAAAAAGTTTAGGTGAGTTGAGCTCTTGGGGCTCACCATTAAGGTAGGCCTCACGGCTCTTTGAGGTCTTAGAGGTACATACAGATCAGATCACCCACTAAAAAGTCTTCGTATCAGCAGGCAGCTGGGAATGAGCCAACTCCTTACCGACCAACCCAATTTCTTGGCACAGGGAGCAATGCCTAGCCAACGGTGAGGAGCTCGAGTTGAGTGAGAGGAGAGAGGAAAACAGTGAAGTGTCCTCCAAGCCAAACTAAAAGCGCATATAACACAACACAGCCACACCATCTTTTATCCCATTCTTCCTCGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACTTGAATTCCGACTCTAATTAGCAACCTCAGATCAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02922.21	CBM_48	209	299	1.40E-13

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	CBM48

Gene Ontology

GO term	Description	Category
GO:0019252	starch biosynthetic process	Biological Process
GO:0009507	chloroplast	Cellular Component
GO:0043033	isoamylase complex	Cellular Component
GO:0010021	amylopectin biosynthetic process	Biological Process
GO:0005983	starch catabolic process	Biological Process

InterPro

InterPro term	Description
IPR044096	Isoamylase 2, catalytic domain
IPR013783	Immunoglobulin-like fold
IPR014756	Immunoglobulin E-set
IPR006047	Glycosyl hydrolase, family 13, catalytic domain
IPR013780	Glycosyl hydrolase, all-beta
IPR004193	Glycoside hydrolase, family 13, N-terminal
IPR017853	Glycoside hydrolase superfamily
IPR044505	Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain

trEMBL

trEMBL term	Description
A0A1S2XS14	_

SwissProt

SwissProt term	Description
ISOA2_ARATH	Isoamylase 2, chloroplastic

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G03310	debranching enzyme 1
Medicago sativa L.	MsG0480023752.01.T01	_
Oryza sativa L.	LOC_Os05g32710.1	Alpha amylase, catalytic domain containing protein, expressed
Cucumis sativus L.	Csa002104	_
Glycyrrhiza uralensis Fisch.	Glyur000158s00011356.1	_
Codonopsis lanceolata	Cl_chr06_41080T	_
Arachis hypogaea L.	AH06G00210.1	Isoamylase 2, chloroplastic like

Expression pattern