Gene detail

Detail information of Am09G012600.1 Annotation

Gene ID	Annotation
Am09G012600.1	RNA polymerase I specific transcription initiation factor RRN3 protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G012600.1	mRNA	Chr09	49627102	49642653	+

Sequences

CDS:

>Am09G012600.1
ATGGGAATGGTGCTTAAGGATGACAAAGGAGAACCTCCTGAATTGGAGAATGCTGATTTCAGTGATTTGCAGTTAATTCATCATGTTAGAGATGCTCTTATTGCAGTCACATTGGGTGATAGAGAGAACTATGATGAGCTTGTTGGTTATTTGCACCCGAGAAGCTATCTTAACACAGATGAGGCTGCTCTACTTGAGACAACTTTAAAAGCGCTCTCTGGAGCCGTCTCCTACATAGACTCTGCCCATCATGATGCTCTTCTTTTTGCTGTTTCGAGAATAAGCTTGTGGAATCATCGAACTGATGTTCTGGATGCACTACTTGAGCTCATCGTATCATTGGCTGTTTCCAATGGAAAATACATTGAATGGTGTTTGGAGATGTTGGTGAGAAGTTTTGTTCCACCTAATCACCTCTCAGATTTAATGAAAAAGGCAAATGGAGTGGACATGAAGAATAAGGTTATGTCTCGGGTGCATGCTGCTTTAAAACAAATAGCTGATTTGGTGCCCCTTGCTCCCTTGCGACTGTCTCCAATAGTTGTTCAGAGAATGCCCAATGTCTTCAGTAAGCAACCTGAGGAGATTGTCATGTATGTAGAGAACATGTTAAGGCTTGAGAGTGGTGCCACTGGAGAAATTGTTGGTGGTACAATGCTTCCTGCTATTGTGGATAGGTTGATAGAGTTGGATGTGCAAATTGATTGGAATGGAGTCTTGCAGGAGGATGCCAACGGCATATTTGAAATGGAGTTAGAAGAAGTTGCTGAATTTGCAGACGACGATGAGAAGTATGATAGTATGGCTTCTGCAAAGTTATATAATAGGAATGACTTAGACGGCAACAAGGTGGTTGAGCAATTAGATAGCCTGGTTGTGCTGACTTTTTTGCATCTAGAATCCTGTCAAAGCAGTGGCCGTTTGGCTGAGGTATTCGATGTTCTACTGACATCATTTCAGAGAACTGTATTGAATACATACAAGTCAAAATTTACCCAGTTTGTGATGTTCTATGCATGTGCACTGGATCCTGAAGGATGTGGTTTGAAATTTGCAATGGTTCTTGCAGACATGTTTGGTTGTGATTTTAATCCCCCTATTACTAGGATGAGTGCTGTTGCTTATCTCGCTAGTTATTTATCTCGGGCGAAGTTTCTTTCAGCTGCATTGGTTGCTAACATCATACAAAGGTTGGTAGATTGGTGTTTTGACTATTGCAAGTCACGTGACTTTGATACGAACCCACGGGTTCACCAAGTTTTTTATTCTGGGTGCCAGGCTATCATGTATGTTCTGTGTTTTCGCATGAGATCATTGATGGATGTTCCTAGGCTTAAATTCCAGCTCCTCAATATGCCCATGGAGCAAATCTGGAAACATAAATCAAGTCCTTTGAAGGTGTGTTTACCTACTGTAGTAGAGGAATTTCTTAGACAGGCAAAGGCTGCTCAGCTTTTCATGACATCAGAGTCATTTATTTTCAATGATTTGCTTGAGTCTGATCTTTCGAAGGCTTTTGGCGGGATGGATAGACTTGACATGTTATTCCCATTTGATCCGTGTTTGTTGAAGAAAAGCGAAAGCTACATAAAGCCACATTTTGTCCGCTGGTCAAGAGTAAAAACTACATATGATTCCGATGACGAAGTCAGCGATAGTGAAAGTGAAGAATCAGTTGACGACTTTGTTGACAGGAATGTGAAAGACATGATTGACACTGATATGATGATGAGCGTTGAAGCAGGTCTTGATTTTGTACCCGACTTGAACAAAATGTCTATCACACCCAAGAAATCGTCGAAGTTCAGTAGGGGTGCGACACAGTTGGAACGGGGTATGCGAATGCCGGCTAGAATCAGACCATCCACCAGTCCAGAATCTTTGTAA

Protein:

Promoter(3k):

>AM09G012600.1
TTAGACACTACACTCCATATTGCCAAGCACACTCAACATGCTTGGCTTGTAATTTAAAGAAGTTTGTATATGGTTTAAAATAGGCTTCATGAAATTTATGCAAAACTTAATCAAACTTTGATTGAATGTGACTTTCAAGAGTGTCATGCATACTATAACCTTTTTACTTATGCAAGTTAATTGTGATGTTCCAACCTTTCTTCATTTCGACAAATATAGCTGCAAATCCACTAGCGAACCTACAAATCAAAGTAGGCTTTCATTTCATTAGAGAGCATTTACATGGAGGAACAATAGCCGCCACCCATAGGGATGGCAATTGAGCCCATGTCTATAGGTACCCACAAAAATTACCCGCAAATGGGCTGGTAACTACCCGCACACATGGGCACGGGCTCGGGGACTGGCACTACGGTGCCCAGCCCGCACCGGGCCCACACCCACATATATATATATAATATTACAACTTTACCTATATTATATATATAGTTACTATTATTACAATTTTAAGTATATCCAACTTTAAAAAAATAAATCCAAACTACTGATATTTTGGATGTTTTTAATTCACTAAATGCTATCACGTGTAATATTTTAATTAGTAGATACAAAAAAATAATGGCTTTTTAAATTAAATTATAATATTTTTATTATTTATTATTTTTTGCTGTTAAAGTGCATGTAATGGGCCCATTACCTGCACTTGGTGCCCAGGGGGTACGGGGACGGACACTATAGTACCCTGCCCATAGGGTACCCATTGCCATCCCTAGCCACACACTCCATTTTTTTTTTAAATCTCATACTCTATTTTGAGGACAAGTATTAAGGTGTGTTTGGATAGGATATTTTTTGAGGTAATGTAATTTTTTGGGAGAATTGTAATATTTTAGTTCAATTTGAACTAAAATATTACAATTCTCCTAAAAAGAAGCTTCATCCTAACATAGGGTTAGAGATTAGAGGGTGAGTTTTGTACTCAAAGGGGCATTCGTCAAGGCGACCCTCTATCTCCACGTCTTTTTGTTCTTTGTATGAAGTGTTTAAGTGCTATGATAACACATTAAGTGAATATAGTGGTCAATGAGCTCCTATCCAGGTTACTCGTAATGGCCCTACTATGTCTCATTTATTTTTTTTGCTGACGATGTTCTTGTTTTTGCAAAAGCAAGAGCATCCCGGGCAAAATATATCAAGAAGTTGTTAGATGATTTTTGTGCACTTTCCGTGCTCAACATTAGTGTGGAAAATCGGTGATTTACGCATCAATGGGAGTCACAACTCCTTAGAGAAATAAAATCATAAATGTTCTTTAGATGGCTTTCAAAACACGCATTGCAAAGTACTTCGGGTTCAAAAAAATTTCAAGTTTGGGTGAAAGGGGGTGATTTTAATGATGTTAAGATCTCTGCGTGGAAAGGTAGACTGCGGAATAAAGTTGGTATACTTACTCTTGCAAACCCAGTTTTATCAGCTTTACCTTCTTATGGTATGCAATTGGGAAATGGGAGACCAGAAATGCACAATCCATTATTTTTGGAGGAAGAACAATGCAATAAAAAAATCATTAGGACGGAAATTGCCAAATTTAGAAAATCGGGAGACAAAAATCACCAAAAGTAAAATAGAGGGACCAAAATCGTTAAACAAATAAATTTGAGAAACCAAAAGTATAACTAGACTTTTTATATTTAGCCCTCACATAAAATTTGTGCTAGCTTCTCCCCCGGCCCCCAGAGAGTGTGATACCCCACCTTATCAAAAATTAAGGAATTTTGGTATTTAATTGGGGAAGCAGAGGTTGTGACCATTTGGATCGTGCCATTCGAAATTTTACTTCGAAGGGACATCATGATCGTGGGATGAATATGGTTGGTTGGAGTAAAATCACAAAACCAAAGAGATATGGTGGCTTGGGAGTAAGAGTGACAAGACATCAAAACACCGCTCAGGTAAAATGGTGTGGGATGTAGTTACTGATTCTAACAAGTTGTGGGTCTCTCTCACTTGAAATCAAGATATTGTCCAAATAGATCGGTTTTCACAAGCAAAATTTCTAGAGGTTTATCTGTTTGGACTCTGATAAATAAGGCGCTGGTTTTTCTCCAAAAAAAGAGATTAAAGGTTACCTTAAATTTGAAAATTTAAATTATCAATTTGTTTAGAGATTAAAGGTTAATTTAAATTTGTAAATTTAAACTATCAATTCAAATTTAAATTGTAAATTTAAGATAAACTTTAACTGACCGATTCTTTAGCTTTTAGGCTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATCACGTGTACTTTACTCCTTTTTTTTTTAACAAAAACTCTACTCCTTTTGATAATCAGAAAATAGAAGCCATTTTAAAAATAAGAATTTAGGAGGGTTCTATGTAATAATAAGATATAAAAGATTTGAAGAACCCAAAATAATTGAGAGTTTTGCTGTTAAAAAAAACACAATCGAGAGTTTTTGTCAAAAAAAAAACATAGTTGAGACTTGAGGGTATATACTATTCATTAATCTTTACTTCCTTCCGTCTCTTTTCCTCGCCAAAGCCCTCACTTCTCCCCTGCGCACGCCGAAGTCGCAGGGGCCGAAGAACGTTAACGGAAAAGGTAATCGCCGGAAAACACAGGTTTTCTTCTTACTTATTCTCCTTCCTCTCTCCCGATGTATAGCGCGCAAAAAACCGCAACTTATGGCGGCGTTTGCGGCCGCTCTAGCCGTACACTTAAACATCGGCCCTATGGCTGAATAGTAGCGGCGAGTTTCCCCTCCGCACTGCTCCGCCGCTATTGGAAACTATGGATTAATATCTCAGATGCTATTAACTTCTGATTCCTGAATATTTGTTCTTGCACTGAGATTTAATTTTTCATGTATGTGAATTGAAAGGTTTAATTGATTCTACTGAATTAATTTACCTTCCTGAACTAGGATTTCAATAGAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05327.14	RRN3	19	541	1.40E-124

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003743	translation initiation factor activity	Molecular Function
GO:0006413	translational initiation	Biological Process
GO:0016020	membrane	Cellular Component
GO:0030246	carbohydrate binding	Molecular Function
GO:0016301	kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR007991	RNA polymerase I specific transcription initiation factor RRN3

trEMBL

trEMBL term	Description
A0A8B8KPP6	_

SwissProt

SwissProt term	Description
RRN3_HUMAN	RNA polymerase I-specific transcription initiation factor RRN3

KEGG

KO	Description	Enzyme
K15216	RNA polymerase I-specific transcription initiation factor RRN3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G34750	RNA polymerase I specific transcription initiation factor RRN3 protein
Medicago sativa L.	MsG0880046947.01.T02	_
Oryza sativa L.	LOC_Os06g47350.1	RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed
Cucumis sativus L.	_	_
Glycyrrhiza uralensis Fisch.	Glyur000945s00028138.1	_
Codonopsis lanceolata	Cl_C04228_unscaffolded_00020T	_
Arachis hypogaea L.	AH15G20940.1	RNA polymerase I-specific transcription initiation factor RRN3 like

Expression pattern