| Gene ID | Annotation |
|---|---|
| Am09G012550.1 | Pectin lyase-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G012550.1 | mRNA | Chr09 | 49444729 | 49451044 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00295.20 | Glyco_hydro_28 | 64 | 384 | 2.20E-22 |
| PF12708.10 | Pectate_lyase_3 | 34 | 274 | 7.60E-11 |
| PF13229.9 | Beta_helix | 128 | 281 | 8.30E-08 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Biological Process |
| GO:0047911 | galacturan 1,4-alpha-galacturonidase activity | Molecular Function |
| GO:0033917 | exo-poly-alpha-galacturonosidase activity | Molecular Function |
| GO:0016829 | lyase activity | Molecular Function |
| GO:0003677 | DNA binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011050 | Pectin lyase fold/virulence factor |
| IPR012334 | Pectin lyase fold |
| IPR000743 | Glycoside hydrolase, family 28 |
| trEMBL term | Description |
|---|---|
| A0A1S2XRT6 | _ |
| SwissProt term | Description |
|---|---|
| PEHX_DICCH | Exo-poly-alpha-D-galacturonosidase |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G57790 | Pectin lyase-like superfamily protein |
| Medicago sativa L. | MsG0780041424.01.T01 | _ |
| Oryza sativa L. | LOC_Os09g31270.1 | polygalacturonase, putative, expressed |
| Cucumis sativus L. | Csa002618 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000206s00012590.1 | _ |
| Codonopsis lanceolata | Cl_chr05_18900T | _ |
| Arachis hypogaea L. | AH16G04120.1 | Exo-poly-alpha-D-galacturonosidase like |