Gene detail

Detail information of Am09G011910.1 Annotation

Gene ID	Annotation
Am09G011910.1	INO80 ortholog

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G011910.1	mRNA	Chr09	47462187	47480116	+

Sequences

CDS:

>Am09G011910.1
ATGGATCGCAGAACCAAACCCAAGGACTCCTCCTCCTACTCCACTCTCTTCAATCTCCAGCCTTTGATGAACTTTCAACTTCCAGAACATGATGATGATTTTGGTTATTATGAGAGTAGTCAGGATGAGAGCAGAGACAGTCAAGGTGGGGCAATTGCGAATTGCAGTAATGGGAATGTGCACGGAAGGGATGTAACTTTGTCGAAAAGGAGGTCGTCTCAAAGAGGTGACAATGGGGAAAAGAGTGGTTTTCACGGGAAACACACGATGGAGGAACGATATCGATCAATGCTTGGAGATCATATTAAGAAATACAAGAGGAGGTTTAAGAATACCTCAACAACTAGTTCTGGCCCAAATCAGGTTGCTACTCCAATCGTGAAAAGCAACATAGGATTAAAAGCTCACAAGCTGGGAAATGAGCACAGAGGACGATTACATGCTGCAGAGACTACATCTGAATGGCTGAATGATTCCAATGGTCAGAAACCGGGGAAGTATCGTGATGCAGATTTCATAAAGCAAGCTGGCACTACTGATAGGGTTATGTATGAACCTTCATCTTTGGATATTGGGGATGGTACAACTTATAAGATTCCTCCAGTGTATGATATGTTGGCAGCAATGGTGAACCTTCCAAGCTACTCAGATATCCATGTTGAGGATTTTCTCTTAAAGGGTACCTTGGATTTGGTCTCCTTGGCTGAAATGATGGCAGCTGATAAAAGGTTTGGGAATAGAAACCGACCAGGCATGGGGGAAACCATATCCCGATACGAATCACTTCAAGCACGACTAAAGGACACATCAGCATCTAATTCATCTCACAAATTCAGTTTGAAAGTATCCGACGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCTGGAAGCATAAAACGATCTATTTTATCTGAGGGTGGTATATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACTTATGAGATCATTGAAAAAAGCCTACCCAAGAGACAAAAGGTAAATAAAGACCCAGCTTTACTAGAGAAGGAGGAAATGGAAAAGTTGGGAAAGATTTGGGTAAATGTTGTCAGAAGAGACTTACCAAGGCATCATAGGAACTTTACTACTTTTCATCGTAAGCAGCTCATCGATGCCAAGAGGGTCTCAGATTACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGGAATGCTAGCATGCGCACCCGAAAACTATCTAGAGACATGTTACTATTCTGGAAACGAATAGATAAGGAGATGGAAGAAGTGAGGAGAAGAGAGGAAAAAGAAGCTGCTGAAGCTTTGAAGCGTGAGCAGGAGCTTCGAGAGGCAAAGAGGCAGAAACAAAGGCTAAACTTTATCATACAACAGACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTTTCTTCAGAAGCTTTAGCCATGGCAGATGAAAATACAAATGATCAAGATGCACCAAACAACTCTTTACATGCTGAGAACAGCGAGGAGGAAGATCCCGACGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTTTCTAAGCAGAGAAGCTTGACGAGTGCTTTCGACAGTGAATGCTCGAGGCTGCGCCAGGCTGGTGAATCCGATACACTTCCACCAGAAGTTGCTGGAGCAAGTAATATTGATTTGCAAACTCCCTCCACCATGCCCGTGGCATCCACGGTTGGGACACCTGAACTATTTAAAGGTTGTCTCAAAGATTATCAGCTAAAAGGACTTCAGTGGCTAGTAAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCTGATGAAATGGGACTTGGAAAGACCATACAGGCTATGGCTTTTTTAGCCCATCTAGCTGAGGAGAAAAACATATGGGGACCTTTTCTGATTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTGAGAAGACTTCCTTATTGGGGTGGGCTGTCGGAGCGGGCAGTTCTTAGGAAAAGTATCAACCCAAAGGATCTCTACCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTGTCTGATGAGAAGTATTTCCGGCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCTCAAGCAATCAAAAGTTCGAACAGTATAAGATGGAAGACACTGCTCAGCTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCTGTTCAGAATAATATGGCTGAACTCTGGGCTCTTCTGCACTTCATCATGCCAACATTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGTGGTACTTTGAATGAGCACCAACTTAATCGACTGCATTCAATTATAAAGCCTTTCATGCTGCGACGTGTTAAAAGGGATGTCGTTTCTGAGCTGACTGCCAAAACTGAAGTTACCGTGCATTGCAAGTTAAGTTCTCGGCAGCAGGCATTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAACCATGGGCAGCTCAATGAGAAGAAAATCCTGAATTTAATGAATATTGTTATTCAATTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAACGAGGGAAGCACATACCTTTACTTTGGAGAGATGTCGAATTCCCTTCCTCCTCCTCCGTTTGGGGAGTTAGAGGACGTATATTATGCCGGGGGTCACAACCCCATATCATATAAGATACCGAAACTTGTCTATCAAGAAATTATGCGGAGTTCTGGAACTCTCAGCTCAGCTGTTGGTCATCATGTCTGCAGAGAATCTTTTCAGAAATATTTTAATATTTTTAGATCAGAAAATGTTTATCGTTCTGTCTTCTCTGAAGATATGCATGTTAAAAGTGGAACCTTTGGTTTTACCCATTTGATGGATTTGTCTTCAGAAGAGGTGATGTTTCTGGCTACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGACAGGAAGAAAAATTCATTAATGAAGTCGTAGACTTTCTTTCGGAGACCATAGATGATGATCCGGAATGTAATTACCTTGAAAAAGGAAAAGTCAGAACTGTCACACGAATGTTATTGGTGCCATCGAGATCTGAGACTAAGTTTCTTCAAAAAAGACTGCCAACTGGGCCCAGCTATGCTCCTTTAGAGGCTTTGGTTGTCCCACATCAGGATAGGCTTTTATCAAACGCAAGGCTTCTTCACTCAGCTTACTCATATATCCCACAAAGTAGAGCTCCCCCTATTGGTGCTCACTGCTCCGATAGAAACTTCTACTACAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGGTTGTTTTTGGGATTTTCACGTACATCTGATTGTAGTGGGCCTAGAAAGCCAGATGGTCCTCATCATCTAATTCAAGAGATAGATTCTGAACTACCGATTTCTAAGCCCGCTCTACAGTTAACACACAGTATTTTTGGGTCTTCTCCGCCAATGCAAAATTTTGACCCAGCAAAATTGCTCACCGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGGCTACGAGCAGGAAATCATCGTGTTCTCTTGTTTACTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGGTATTTTAGACTTGATGGATCATCTACTATTCAGGACCGCAGAGACATGGTCAAAGACTTTCAGCATAGGTCTGATATTTTCGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCGGCTGATACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTCTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTACTTAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTTATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGCTCAGTTGGAGCAGAAGTTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAAGGGTATTTGGTTAAATGAAGAAGGTGATGCATCTCTGGAAGATCTATCAAAATCTGTAGCCCAGGCTACTACAGATTATGATATTCCCATGGACCCGGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCATCAGATAAGCAAACTTTGAGGCCAAAGAATTCTCAAAAGATGAGTGAATTCAGTACTACGCCTGAGGACGATGAATCGGATGATGTCCGCCTAAATACTGAAGTGGGTCAGAAACCCAAGAGACCAAAAAGAATAAATAAGAATGTGAATGTAAAGTTGGAAGAGGCTTTTACTGGGACAGCTACCATGGTCCCAGAGCAGACTCAATTTCAACCTCCTCATGATTTCAGTGCTGGAGGTTCTAAAATAGGAGGCCAAGACACCTGA

Protein:

>Am09G011910.1
MDRRTKPKDSSSYSTLFNLQPLMNFQLPEHDDDFGYYESSQDESRDSQGGAIANCSNGNVHGRDVTLSKRRSSQRGDNGEKSGFHGKHTMEERYRSMLGDHIKKYKRRFKNTSTTSSGPNQVATPIVKSNIGLKAHKLGNEHRGRLHAAETTSEWLNDSNGQKPGKYRDADFIKQAGTTDRVMYEPSSLDIGDGTTYKIPPVYDMLAAMVNLPSYSDIHVEDFLLKGTLDLVSLAEMMAADKRFGNRNRPGMGETISRYESLQARLKDTSASNSSHKFSLKVSDADLNSSIPEGAAGSIKRSILSEGGILQVYYVKVLEKGDTYEIIEKSLPKRQKVNKDPALLEKEEMEKLGKIWVNVVRRDLPRHHRNFTTFHRKQLIDAKRVSDYCQREVKMKVSRSLKWTRNASMRTRKLSRDMLLFWKRIDKEMEEVRRREEKEAAEALKREQELREAKRQKQRLNFIIQQTELYSHFMQNKSNLLSSEALAMADENTNDQDAPNNSLHAENSEEEDPDEAELKKEALKAAQEAVSKQRSLTSAFDSECSRLRQAGESDTLPPEVAGASNIDLQTPSTMPVASTVGTPELFKGCLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELRRLPYWGGLSERAVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKRDVVSELTAKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNHGQLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEMSNSLPPPPFGELEDVYYAGGHNPISYKIPKLVYQEIMRSSGTLSSAVGHHVCRESFQKYFNIFRSENVYRSVFSEDMHVKSGTFGFTHLMDLSSEEVMFLATGSFMERLLFSMMRQEEKFINEVVDFLSETIDDDPECNYLEKGKVRTVTRMLLVPSRSETKFLQKRLPTGPSYAPLEALVVPHQDRLLSNARLLHSAYSYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFLGFSRTSDCSGPRKPDGPHHLIQEIDSELPISKPALQLTHSIFGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFTQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVKDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDAQLEQKLKEIPLQVKDKQKKKQPMKGIWLNEEGDASLEDLSKSVAQATTDYDIPMDPEGSKSSNKKRKAASDKQTLRPKNSQKMSEFSTTPEDDESDDVRLNTEVGQKPKRPKRINKNVNVKLEEAFTGTATMVPEQTQFQPPHDFSAGGSKIGGQDT*

Promoter(3k):

>AM09G011910.1
TCTATTACAGGTAAAGACAGTCTCAGAGGAGCAGATTAAGGCCTTAAAAGAAGCTGTTCATCCTGTAAGTAAATAAGCACCTACTAAATAAGATGAGATTTAGTATAAGTCGGTACGTAGATCTGGACAGTCCACATCAGTACGGTCGTGCAGCCAATAGATCTGGACAGTCCAATCTTGATCCGGCAGTTTAGATTTTAACTTTATGTTTTGTATCTATTTTTAAAGTTAAAAATCTAGACCGTCTGATCAATATCGGATGGCCCAGATGTGTTGATTGTGCAATTGCACCAAAATGGTGACGGTACAAGATCCATATCCCTATATATATACATATATTATTCTTGTCTCTAAGTTATGGCTGTTCCTACAGGGGTTTGAGGTGAATGCAAGGCCAACACAAGAGCCTAATGGGAAACCAGTTTGGTTATATACACAAAAGGAGGATAAAAAGAGCACTTGAAGTTGAATGTATATGAGATGCGAAGGGAATTGGAATGCTTCTATTGTTGGTAATAAAGTAGAGAAGAACAAAAAGGTATACTTGCATGAAGAAATAAGGGTCATAAAGATGTTCAGATCATGGTTAAGCACCTGTGATGATGAGCTTTAGTATAAGGTTAATGTGTATTTTGTGTGTGCTTGTTATTGTTGTATAAGTTGGTTTGTTGTATGTGAATATATAAAAATGCAACAATTTATATGCAAGATGGGTTCATGGACATTAATTTGTGAATCCCTCTTACAAATGTGTAACCGAGCTATCTTTTTAATTATAACATGAAAGAGTTGTACTAAAAAAGATTTACAAACTATTTTTAAATGAAGTTTATGAAGCTCTACCAAGGATGGATTGGATAGATTGTTGGTCGGCAAGAAGACCTCATTCGATTATACCTATGACTAGGATAATGATAATGGTGAGTCCTATTTATATAATATGATAATATAGACTTAACTATAATAAGATATCAAGGTTATGCGATTTTGATCCTCAGACTTTGATTGTGCTTTAACCCCCAAGCCCAAGGTTCTAATTGCGCGAATTGGGTTCTTCTAATGTCGTGATTGTGCAATTTTAATCCCCATGTCCATGCTTTTAATTTTAATTTTAAGCCAACTCAAATGACAATTGGATAACATAGCATCTCACATAGACTAAGTTATGTGTCATGTCATATCCACATGTGACACATCGACATTTTAATAAGAAATTGATTGACAATTGAACTGAGGGACCAAATAGCAAAATCTCGATACCTGAAGGACTAAAGTCACACAATTGGAACTTGTGAAAATCACAATCATACAATTATGATATTTGAACAATCCAATTCACGCAATTGAAACCTATGAGATCAAAAAAACACAATCGCAATACAAAAACAATTAAGCCTAAGATATATTTATTTTTTTTCTTATAAACACTATAACTAGAGGGAGGAATTTTTTAAACAAAAATGATAGGCAAAAACATCACAATAGGATGAGATCCCGTCTATGCTGGCACCCAGGTTCTACTTATCATATGCAACACACCATGCACTAATAGGAATGGAAGACTTCGTATCTTGGTTTAGGGTTCCATCATCAGCCTCAGAGTGAGAAAACACTTGTTTCTGTCGAGTGTGGGGAAGGATGAAACAATACCTCGATAAGTATACCTTGACGAAGATCCTGTGGTCACTCTAGGATCTTCTTCATGATCTACATCAAACCTTCGCCTTTCATATCTTCTTTGAGAGCAACAACAACAACCTTTGCTATCTCCGAACCTTCATGGTTGAGAAAGAGATTCGGCGAGTTGGAAAAATGTAGATCTATACCCAAATGAATTATTGGGTTAAAGATGTCAACAGAACACCAACTCGTGAAGATGTCTCCAACCGTGGTTAAAGGGGGTTTGGGTTGAAGCTGATGAAAGTTGAGAGGTAAACTGTTAGAGATAAGTTTGATCCATCGATTTTGTTTTTGACAAATTTACCCTCTATTTTTTTGATCAAACAAATTTACCCTCTATATTTCGAGGTGGTGCATGTTTAAAGTAAGTTAAATTGGTAAATATGATGTGAACAAATAACATAAATAGATATTAGATCAGATTGAATTCTCCATTGATATGTACAAATTTCACAAAAGGGTGGAACAGTATTGCAGAAACAAAAAGAAGGAGGCGAGAGGATACGACTTTCAATTTTATCAATTTTTTATTTTAATGATGTGTCGGGATTTTATTGGTTGTGCAGATGCGTTGTTATATCTGTGTCCATCTAAGAGTTTCTCACAAGAAATAAAACATATGTTCTCAATTAATTAATTTTTTGTTTGTTACGGATGAAAAAGTAAGCAATTTTATCATTAAATAATTTAGAAATTTACAATTTTTTTTTAAAAAATTTTTAAGAAAATAAAAGTTGTTTAGGTTTTGTGTTTTTTTGGTTTGGATCATTGTTGGGCTACCCATAGAGTGTCTCAATGATTTCAATGAAAGACTAATTACTGCTCGTGATTAGAATCAAATTTCGCACCAGAGCTTGTGTTTTTTATAACATAATAAAAATTACATTTTATAAAAATATGTGAGTATATTCATCTTTTTAAAAAAAAATTGTAACAATGGTTGGTCAAAGTGATAATCGGGCTTGGATCCCACCCCAAGATCTCGAGTTCAAATATTAGGTGTAGTAAAAACTCTGTTGGGAGGGAACGGCAAAGTCGGGTATATACGTGGCTAGTGCGGGTTCCCGGCATAGATTAATTGATTTATTTTCCAGAAGGAAGGCAGGTAGCGCACGTTAGCGTCAATGTCCCCCGCTTAGCGCACACTAGCACCAGCTAATGCTTCCCTTCGCTACGATCATCATCGTTCTCCCTCCACTCACCCCCCCACTTATCCTACGCACCCCTCCGATCCCATTCTCCTTCAAGAATTAGGTTTCTTATGCTTCATCCCAGTAACTAGAGCTCCTTCCTGCGCATTGTAGTGGCCTCGTGCTGCAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	605	892	1.20E-69
PF13892.9	DBINO	350	479	1.30E-44
PF00271.34	Helicase_C	1208	1317	4.70E-17
PF04851.18	ResIII	591	755	2.20E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	CHR21
Transcription Factors Family	SNF2

Gene Ontology

GO term	Description	Category
GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process
GO:0045739	positive regulation of DNA repair	Biological Process
GO:0016444	somatic cell DNA recombination	Biological Process
GO:0004386	helicase activity	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process

InterPro

InterPro term	Description
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR020838	DBINO domain

trEMBL

trEMBL term	Description
A0A8B8KY70	_

SwissProt

SwissProt term	Description
INO80_ARATH	Chromatin-remodeling ATPase INO80

KEGG

KO	Description	Enzyme
K11665	chromatin-remodeling ATPase INO80	[EC: 5.6.2.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G57300	INO80 ortholog
Medicago sativa L.	MsG0180002976.01.T01	_
Oryza sativa L.	ChrUn.fgenesh.mRNA.85	expressed protein
Cucumis sativus L.	Csa011159	_
Glycyrrhiza uralensis Fisch.	Glyur000019s00002123.1	_
Codonopsis lanceolata	Cl_chr04_02550T	_
Arachis hypogaea L.	AH16G04860.2	DNA helicase INO80 like

Expression pattern