Detail information of Am09G011530.1 Annotation
Gene IDAnnotation
Am09G011530.1 Eukaryotic rpb5 RNA polymerase subunit family protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am09G011530.1mRNAChr094560131745604255-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF01191.22RNA_pol_Rpb5_C1692411.20E-29
PF03871.17RNA_pol_Rpb5_N441268.50E-21
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0006366transcription by RNA polymerase IIBiological Process
GO:0003677DNA bindingMolecular Function
GO:0009304tRNA transcriptionBiological Process
GO:0009303rRNA transcriptionBiological Process
GO:0006354DNA-templated transcription elongationBiological Process

InterPro
InterPro termDescription
IPR035913RPB5-like RNA polymerase subunit superfamily
IPR000783RNA polymerase, subunit H/Rpb5 C-terminal
IPR005571RNA polymerase, Rpb5, N-terminal
IPR036710RNA polymerase Rpb5, N-terminal domain superfamily
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5

trEMBL
trEMBL termDescription
A0A1S2XST9 _

SwissProt
SwissProt termDescription
RPE5A_ARATHDNA-directed RNA polymerase V subunit 5A

KEGG
KODescriptionEnzyme
K03013DNA-directed RNA polymerases I, II, and III subunit RPABC1

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT3G57080 Eukaryotic rpb5 RNA polymerase subunit family protein
Medicago sativa L.MsG0780040423.01.T01 _
Oryza sativa L.LOC_Os12g04510.1DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
Cucumis sativus L.Csa002684 _
Glycyrrhiza uralensis Fisch.Glyur000013s00003193.1 _
Codonopsis lanceolataCl_chr07_40810T _
Arachis hypogaea L.AH16G05300.1DNA-directed RNA polymerase V subunit 5A like

Expression pattern