Gene detail

Detail information of Am09G011530.1 Annotation

Gene ID	Annotation
Am09G011530.1	Eukaryotic rpb5 RNA polymerase subunit family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G011530.1	mRNA	Chr09	45601317	45604255	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM09G011530.1
TTTACTCCGACAGCATCAGATATCATTCCCTGAACAACGTCAAATGGTTGGTATCTCGTAGACGATTGATGGCTACTCGATGTGGGAGCTTGTACTTCAACTGAAACATTAACTGCATGAACATTATTAACCGCCGGAGCAGGTACCCCAGGTGCTACTTCGCCGTGACGACTCCATATCCAATAATTTGGCCTAAACCCATTATTGTACAAATCAAGTTTCACTTCTTCTTCATTTTTTATAAAACGAAATCTACAGTTCGAGCACGGACATCGTATTCCGCCTTGTCGCCCAAATTCCTCTCGACTCTTAGCAAAAAAAACAAACTCTTCAACTCCCAGTACAAAACGTCGCTTTAAACCAGCTCTTCCAGGAAACATTCGATCGTACATCCAACTACGATCCATTTTTTGGGAATCTATGTACTACTATACAATATATATGTAAAACATATATTAATAACCAACAAATTTAAATATGTATTTATGTACTATCTATATGTAAAAAATAAATACATATTTAATTTCATATACATTTTTTTACTAAATAATTACTTATAAATTTTTAATTAACAAACCTATAACTTTCTAATTAACAAACATAAACAACATATTTTTTATATCTAATACAAAATATTTTTTTATAATGTGATATATATTTTTATCTTGTATAATATATATAATGCACCATATATATGTACAAAATATATATCTTAGTACAATATATATGTAAACGTAATTTTTTTAATCATTCACTATATAAATATATATCTTAGTACAATATATATGTAAAAAATAAATATTATTTTTAACATGTTTTATTAAATAAATTTTTTTTTTAACATGTTTTACTATCTAAACATATATTTCATTACAATATCTATTTATTAACATGTTTAACTAAATAAACGTAATTTTTTACTATCCAAACATATATATTATTAACATGTCACTACAATATCTAATAAAAACAACTTAATAACTAACCAGAATTGAAGATGAGTCTCTGATTGATTCAAATTATATTTTCAGTGTGTGTCCAACCAAAGTCCCTCGAACAAAAATGTCTTCAAGCTCCTCCAACCGAATCCTAAACAAATAAAGTTAGTAATGTTAAATTAAGTACATATATGATATTAATATAAAATAAAACTTATAACTAACATTTGTTTAAAAACATACCGTGAAAAATTTGCAAACACGTCAAATGAGCTAAAATTTGGAATGGAACAATAGAATATGAGAGCTAATAAGTGTATGAAATAGAATGGGTGAATGGGGATTAAGAAATTTGGAATGGGTAAGATGAAGGAATGGGGAGAATGAAAGATGAGTGAATGAAATGAAAAATTCGGAATAGGTGAAGATGAGTGAATGAAAACAAAAAATTCGGAATAGGGGAAGATGAATGAATGGAAAAGATGAAAGATAAGTGAATGGAGTTGAAGAAATTTGGAATGGGGAAGATGAAGGAGTGGGGAAGATGAAGGAGTGGGGAAGATGAATGAATTGGAAATGAAGTGAAAGTCGTATGTCTATTTATATAATCAGAATGGCCAACGGCTATTTCCAAAAACCGCCAGTAAAAGCCATTTCCGGCGGATTTTACCAACGGCTATATTCAAAAACCAGCAACGGATATCCATTACCGGCGGAATAAGCCATTTCCGGCGGTTTAATTCAAATTTCGAATTTCCCTCTTTTCCACAAAACCGCCGGTAAATGCACATTTCCGGCGGTTTATTTAGTCCATAATTTGCGGCGGTTTCATCAATGTTTCCGGCGGAAATTTTAAATATTTGAATTTCCACTCCTCCCAAAAACCGCCGGTAATGACACAGTTCCGGCGGTTGATTTGGTCAATTATTTCCGGCGGTTTCATCAACGTTTCCGGCGGACTTTTTAAATTTTGAATTTCCCCCCTCTCCAAAAAACCGCCGGTAATGTGCATTACCGTCGGTTTTAATTTTCGTTTTTCTGAAACAATTTTGCGACGCAATATTACGCCGGAAATGCTCCATTTTCCGCCGGAAATCTTTCGTGGGAAAAATGTCGCCACTAACTGCTTAAAATCCGCCGGAACGGTACAGGCGGATTAATTCCGCCGGAAAGAAACCGCCAGTAAATCAAGTAATTCTTGTAGTGAATGTAGCTGCAATAATCCTTCGCGGTAGGCAGCTCCTTTTTCATCGACTTTTAATCCTCTCAATATTTTTAGTCAGCAACTTGGTCTCTATAAAATCAAAATAAAATGCGGTATTATTGGTACCAAATTTTGAAGATATACTCTATGTATAAATTATAGGCTTAAATATATGTTAAGCCTATGTAAATATGGCGAAAATCCATTTAAACCCCTGTAATATTTTTTTTAAAATGACCCTTATAAATATTAAACGCTTGCGGTTAAGCCCCTCAGTCAATTTTCCATATTTGCAGAGGGTAAAAATATATGTTCAGCCCCTGCAAATATGGTCATAATCCATTTAAGCCCCTATAAATATTAAAAAATTTAAAATGTTCCGCCCCTACAAATATGACCATAATCCATTTCAGCCTTCTGTAAATATTAAAAATTTTAAAATGACCCTTATAAATATTATATGCTCAACTTTTTTTGATGAAAAATTGACCGATGGGCTTAACCGCAAACATTTAATATTTACAATTACCAGGGTCATTTTAATTTTTTTTTTACAGGGACTTAACTGAATTTTGACTATATTTGCAGGGGTCGAACATATATTTATACCTAAATTATAATAGAAGTCTCTGAAAAAATAAGTACAAAAAAAATTGAATTCTTCTCAATAGCTGGGCTTGTAAATTGATTTTATCGAATGTGTGAGATTATTTTGACGAGGATTCTGTTCCGAATTTAACCCTTGGTACTTTTCAATCTATCTATAAAAATTAAGACAGTGTTGGTACAGTTAAGACTTAAGACAGGCGAAAGAGCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAAAGAGTTTGAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01191.22	RNA_pol_Rpb5_C	169	241	1.20E-29
PF03871.17	RNA_pol_Rpb5_N	44	126	8.50E-21

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006366	transcription by RNA polymerase II	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0009304	tRNA transcription	Biological Process
GO:0009303	rRNA transcription	Biological Process
GO:0006354	DNA-templated transcription elongation	Biological Process

InterPro

InterPro term	Description
IPR035913	RPB5-like RNA polymerase subunit superfamily
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal
IPR005571	RNA polymerase, Rpb5, N-terminal
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily
IPR014381	DNA-directed RNA polymerase subunit Rpo5/Rpb5

trEMBL

trEMBL term	Description
A0A1S2XST9	_

SwissProt

SwissProt term	Description
RPE5A_ARATH	DNA-directed RNA polymerase V subunit 5A

KEGG

KO	Description	Enzyme
K03013	DNA-directed RNA polymerases I, II, and III subunit RPABC1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G57080	Eukaryotic rpb5 RNA polymerase subunit family protein
Medicago sativa L.	MsG0780040423.01.T01	_
Oryza sativa L.	LOC_Os12g04510.1	DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
Cucumis sativus L.	Csa002684	_
Glycyrrhiza uralensis Fisch.	Glyur000013s00003193.1	_
Codonopsis lanceolata	Cl_chr07_40810T	_
Arachis hypogaea L.	AH16G05300.1	DNA-directed RNA polymerase V subunit 5A like

Expression pattern