Gene detail

Detail information of Am09G011220.1 Annotation

Gene ID	Annotation
Am09G011220.1	general transcription factor II H2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G011220.1	mRNA	Chr09	44705675	44710703	-

Sequences

CDS:

>Am09G011220.1
ATGAATAACATTGCTGAAACTAAAAGACCACTTAATAGAGACGTAGAAGATGATGATGAAGATGAAGCTAATGGTGACGGCCTTGAAGCCTGGGAGAGAGCTTATACAGAAGATAGATCGTGGGAGTCTTTGCAAGAGGATGAATCCGGACTTCTTCGCCCCATAGATACTACAGCCATTCAGCATGCCCAATATCGCAGGCGGCTTCGCTCCCTTGCTTCCAAAGCAGCTACTGCACGCATTCAGAAGGGTCTGATACGATACTTATACATTATTGTGGACCTGTCCAAGGCAGCTGCAGTGACAGACTTTCGACCAAGTAGGATGGCTGTGATCGGGAAACAGGTTGAGGCATTTATTAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGTTTGGTGACAACAAAAGACGGGGTTGCTCAATGCTTGACTGATCTTGGTGGCAGTCCCGAGTCCCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCCTACAAAATGCACTAGATCTTGTTCATCGCTATCTAAATCAAGTTCCATCATATGGTCATCGAGAAGTTCTGATTTTATATTCGGCTCTCAGTACATGCGACCCTGGTGATCTTATGGAAACCATCCAGAAATGCAAAAGGAGTAAAATAAGATGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAACATCTCTGCCAAGAAACTGGTGGAACTTATTCTGTTGCACTAGATGAGTCGCACTTTAAAGAGTTAATTCTAGAGCATGCACCACCACCCCCGGCAATAGCAGAGTATGCTACATCTAATTTAATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCTATTGCAATTTGTACATGTCATGAAGAGGCTAAGATCGGAGGGGGCTACACTTGTCCAAGATGTAAAGTTCGTGTTTGCGAGCTTCCTACTGAATGTCGCATCTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTCTTCCCTATAGTGCCGTTTGATGAGGTCTCTCCCGCATCTCAAAATGATCCAAGGCACAGATTTCCAAATACTTGTTTTGGTTGCCAACAAAGTCTTCTTAGTGAGGGAAACAAGCCTGAACTTTCTGTTACTTGCCCAAAATGCAAACAGCAATTCTGCCTTGAGTGTGACATCTACGTTCATGAGAGCTTACATAACTGCCCAGGGTGTGAGAGTTTCAGGCATTCCAAGTCAGTAACTGCTGCATAA

Protein:

Promoter(3k):

>AM09G011220.1
ATTGTCACTTTGTCTGCAAACCAAAAAAAAGATAATTATTGTTAATTATAATTATAAAAAATTTGGCTTAAATACAGTTTTGGTCCCCCTATTTTGACGAATTCACGATTTTGGTCCCCAGAGTTTTAATTTGACGATTTTGGTCCCCCTATTTTCCCAATTTGAAAAATCATAGTCCCCATCTTAAATAAGTCAAAATTGAAACTCAATTTTGACTTATTGTCCTATGTGGCAGCCTACGTGGCACCCCCCACCCCCCACCCCACCCCTCCCCCCACCCCCACCCCACCCCCACTGTTCATCTTCCCCTCCCCCCACCCCACCCCCACTGTTCGTCTTCCCCTCCCCCCACCCCCACCGTGACCCCCTCCCACCCCCCACCGCGAACCCCCCCACCCCACCCCCCCATCGATCTCCCTTGATCTCCCTCGATCTCCACCGTGACCCCCCCTTCGCACCTCCCTCTCTCTCTCGCTCACCGTCTCTCCCCTCCCCCCTCGATTTCCCTCTCTCTCGCTCACTGTCGCTCTCTCTCTCTCTCCTTCGCATCTCACCGTCGCTCACCGTCGCTCTCCCTTCGATCTCCATCGCTCTCGCTCGCCGTTCTCTCTCTGCGTTCGCTCTCCCCGCCATTCTCTCGCTCGCTCGCCGTTCACTCTCCCCCCCCTTCGCATCTCTCCGTTCTCTCTCTCTGCGTCTCTCTCTCTGCGAACTCTATCTCTCTCTGCGAACTCTCTGGGGGTGAGGGGTGGGAAGAGGAACCGTGAAGGGGGGAGGAGGGGGAGGGAGAGCGACGCATGAGGGGAGGGAGAGCGACGGGGAGGGGAGGGAGAGGGAGAGCGACGGATGAGGGGAGGGAGAGCGACGGGGAGGGGGGTTCACGGTGGGGGGGGGGGGGGGGAGGGGGAACAGTGAAGGGGTGGGGAGGAACAGTGAAGGGTTCACGAGGAAGAAGAAGGGGGGTGGGGGTGGGGGGATGGAGGGGTGGGGGGGGTGGGGGGGGGGGGGGGGTGCGCCTACGTGGACTGCCACGTAGGGGATGAGTTAGTCAAACTGAGTTTCAATTTTGACTTATTTAAGAGGGGGACTATGATTTTTCAAATTGGGAAAATAGGGAGACCAAAATCGTCAAATTAAAACTTTGGGGACAAAAATCGTGAATTGGTCAAAATAGGGGGACAAAAACTGTATTTAAGCCAAAAAATTTCTTGTCAAAAAAATAAAAATAAAAAAATTTAAAAAAGTTCGTCAAAAAATTATACAGTTGCGTCACACAGCGCCAGGTCAAACCCTCGGTCACACCGTCCTCACGTTCTCACACTCCCTCTGTCACACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACGACGGCGCACCAATCCACTGTCTGAATCAGAGCTGGAACCACTAACCACACCGCCGATCTCCATTTTTCTGGTATACATTTTTATTTCACTGCCACCTTGTTTGTTAATTTGGGGTTTTATTTTCAAGATTCCATTGCTACCTGCTTGCTACTTATTCCTTGTTGATTTCATTGTTACTTGCTTTGCGTCTTATTCCTTCGTTGATCTGAGTGATAGCAATGCATAATTTTCGATTTGAAACCACTGCTTATCTGACTGTGATTGTTTGTTTAAGTTGTACACTAAACCTGTTTGATTAAATGCCACAACAAGACTGTATAGAGTGAGTGAATGGGTTAGTTGGATTTTAGGATCTTTCTCAGACTCATAAAGAGAAAAGCTTGAGAGCAATAAATAAATAAAAAAACTTTATCTTCAAACCTCAGCAGTCCTAAAAAATCTTCTTGATCCCTCTTACCTTCCATACTGTAGTTATGCTCTATGACAGTGGTAAGTCCATCTTAAACAATGTGGAAAAAATAATAGAGCACAACACCATTAAAAGGGAGAGAGACAAGATAGTACAAAAATAAGAATGTAACAAACAACAGTTACCAACACTCTTAAAAATTCCGTATGCTGTCAACAGGATGTTGCAACCACGGCAATGTTATCACCTTGATTGTGAGTGTTTGTCTAATTTGTAAACTCAACCTGTTTGATTAAATGCCGCAACTTACAAGAGTGAATAGAGTGAGTGAATGGGTTAGTTGGATTTAGGCCATGTACAAGGTGTAGTGTAGTTGGATTTAGTTTCCATAATTTCCTATGCATAAATAGACTCTGAACCCGAATTTTGTTAGTTCCTTTTAGAAATTAGGGAGCAAACTTACCCCCATGCAAACACACATAGTTAGAGATTTTGATCTCATTCGGATTGTAACTTGCTAATACTGCAGAAATCAAATCAATTAGCATTGCTAATTGATATTTCAGCACTATCAAATCCTGTCCTGTGTAGTTAGTTTTATGTTTGCATGGCATTGGCTTAAACTCCTTACTACATTCTTGTTCTTGATCTTATTTGATGTAAGGCTAGCATGGAGTATCTATCACATGCTGTTCTAGCCTTCAAGGTTTGGATTAAACATTCTTTCGAAATCGTAAAAGAAAAACCTGGTGTTATAGAGCAGGAGCTCCTGCCATAACGAGGTATAGAGAAAGGTCAAAACAGTTGTGGGTTTATTGTCGGTAGCCTTACTTTGTATTTGCAAGAAGCTGATTTCCTGATTCAAATGTGTGACAAGGTTAACTGTTGCACCAATACTCCCCTTCATTTCTGTGCAAATCATTTAGCTTTATAATTTTTGATAATCGTTTTTTAGAATTTCTACATCTTACTGGTATTGGCAACACAAAGATAGAGTTATATTGTTTCTTTTCTAGCCCTTTTATTCTACGTGAATGGTTCATTGCTGCTTGTGTGATTGCACCAAAAGATCTCTTTTTTAAGTGCGGATGTATCAGTATATTTCCTTTAGTGTTCTAAGATTATCTATTGAAGGAAATTTGATGAAGAATTCATTTCACTGCTGCAGCTTCTGCCCTTGGTTAATTAACTGCCTCATCTTTCGATCTAGAAATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04056.17	Ssl1	92	282	4.20E-84
PF07975.15	C1_4	365	413	8.60E-18
PF13519.9	VWA_2	90	197	2.50E-10

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006351	DNA-templated transcription	Biological Process
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0003743	translation initiation factor activity	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0006413	translational initiation	Biological Process

InterPro

InterPro term	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR013087	Zinc finger C2H2-type
IPR002035	von Willebrand factor, type A
IPR036465	von Willebrand factor A-like domain superfamily
IPR012170	TFIIH subunit Ssl1/p44
IPR004595	TFIIH C1-like domain
IPR007198	Ssl1-like
IPR046349	C1-like domain superfamily

trEMBL

trEMBL term	Description
A0A1S2XRG4	_

SwissProt

SwissProt term	Description
TF2H2_ARATH	General transcription factor IIH subunit 2

KEGG

KO	Description	Enzyme
K03142	transcription initiation factor TFIIH subunit 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G05055	general transcription factor II H2
Medicago sativa L.	_	_
Oryza sativa L.	LOC_Os04g42990.1	suppressor of stem-loop protein 1, putative, expressed
Cucumis sativus L.	Csa012506	_
Glycyrrhiza uralensis Fisch.	Glyur000013s00003233.1	_
Codonopsis lanceolata	Cl_chr06_23680T	_
Arachis hypogaea L.	AH20G34730.1	Uncharacterized protein like

Expression pattern