| Gene ID | Annotation |
|---|---|
| Am09G011140.1 | DNA/RNA helicase protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G011140.1 | mRNA | Chr09 | 44500972 | 44510990 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00176.26 | SNF2-rel_dom | 210 | 534 | 1.00E-73 |
| PF08797.14 | HIRAN | 21 | 113 | 2.70E-20 |
| PF00271.34 | Helicase_C | 646 | 762 | 3.10E-14 |
| PF13920.9 | zf-C3HC4_3 | 571 | 618 | 3.40E-07 |
| PF13639.9 | zf-RING_2 | 573 | 613 | 1.20E-06 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | Others |
| Ubiquitin Family | RING |
| Epigenetic Regulators | CHR22 |
| Transcription Factors Family | SNF2 |
| GO term | Description | Category |
|---|---|---|
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Molecular Function |
| GO:0005524 | ATP binding | Molecular Function |
| GO:0016567 | protein ubiquitination | Biological Process |
| GO:0003676 | nucleic acid binding | Molecular Function |
| GO:0004842 | ubiquitin-protein transferase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR017907 | Zinc finger, RING-type, conserved site |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR000330 | SNF2, N-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014905 | HIRAN domain |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XRF2 | _ |
| SwissProt term | Description |
|---|---|
| SM3L1_ARATH | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 |
| KO | Description | Enzyme |
|---|---|---|
| K15711 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 | [EC: 5.6.2. 2.3.2.27] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G05130 | DNA/RNA helicase protein |
| Medicago sativa L. | MsG0780040367.01.T01 | _ |
| Oryza sativa L. | LOC_Os08g08220.3 | EDA16, putative, expressed |
| Cucumis sativus L. | Csa006971 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000013s00003246.1 | _ |
| Codonopsis lanceolata | Cl_chr04_20710T | _ |
| Arachis hypogaea L. | AH20G34820.1 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 like |