Gene detail

Detail information of Am09G010580.1 Annotation

Gene ID	Annotation
Am09G010580.1	SU(VAR)3-9 homolog 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G010580.1	mRNA	Chr09	42095932	42099908	-

Sequences

CDS:

>Am09G010580.1
ATGGATCATAATTTGGGTCAAGATTCTGTACCAACACCTGGATCCTTTGATAAGTCTAGGGTTTTAAGTGTTAAGCCATTGAGAACTCTTGTCCCCGTGTTCCCTTCGCCGTCGAATCCATCTTCAAATCCACAAGGTGGTGGTGCTCCTTTTACTTGTGTTTCTCCTTCTGGTCCTTTTCCCTCTGGGATGACACCCTTTTACCCTTTTTTCATGTCACCTGAATCTCAAAGGCTCTCTGAACAAAATGCACATACCACAACTCCTGCGGCACCAATATCTACTGCTGTTCCGATTAATTCATTCAGGACACCACCAGCTGGGGCAACAAATGGAGATGTGGGTTCCTCGCGGAGGACTAGTCGGACTCGTGGACAGGTTGCTGAAGAAGAAGGATATAATAATGTTGAGATGAATGAGATTGATGCTGAAGATGGAAGTGTAAAGCGAAAGTCACGGAAGAGGGCAAGTGGAAAACGTTCTAGTTTTGCTGGTGCTGGTCGTGGTAGCGGTGGTGAGGTTCCTGTTCGTGTTGATGTTGATCTTGATGCATTGGGTAGTGATGTTCTCAAATCAATTAACCCTGCGGTTTTTGATTTACTAAATCAACAAGTAGGTAGTAGAGACTCAGTTTCGTATACACTTTTGATATATCAAGTGCTACGAAGAAAATTTGAACAAGTTGAAGAGATATCAAGGGAACCGAATTCTGGGGCAAAGCGACCTGATTTGAAGGCAGGTGCAATGATGATGAGTAAAGGGATAAGGGCTAACAGTGTGAGACGGATCGGGGTCGTGCCTGGTGTTGAGATTGGTGATATTTTCTTTTTCCGATTTGAGATGTGCTTAGTGGGATTACATGCACCTTCTATGTCCGGAATCGATTATTTGAATCCCAAATCAAGTCAAGAGGAAGAGCCATTGGCTGTAAGTATTGTCTCAGCTGGAGGGTATGAAGACGATGCAAATGACGGGGATGTGCTGATTTACAGTGGCCAAGGTGGCGTTAACCGTGATAAAGGAGGAAGTGATCAAAAACTTGAAAGAGGTAATCTTGCATTGGAAAAAAGCATGCATAAAGGTAATGATGTTAGAGTAATTCGGGGTTTGAAAGATATGATGCATCCAACTGGGAAAATTTATGTCTACGACGGTCTTTACAAGGTTCAAGATTCGTGGGTAGATAAAGCAAAATCTGGTTTCAATGTATTTAAGTATAAATTAGTCCGAAATCCTGGGCAGCCTGAAGCATATACCATGTGGAAATCCATCGAACAATGGACCAATAAGTCTGTTTCAAGAGGGGGAGTTATATTGCCAGATCTTACTTCTGGAGCTGAAAAGGTACCTGTTTGTCTTGTGAATGATGTTGATAACGAAAAGGGTCCGGCATATTTCACTTACACTCCTACTCTCAAGAATTTAAGGTCGATAGCTCCTTTAGAATCTTCTGCTGGATGTTCGTGTGTTGGTGGATGTCAACCTGGCAATATGAACTGTTCTTGCATTCAAAAGAATGGCGGTTATCTCCCATATTCTGCAGCTGGAATACTTGTAGATCTAAAATCTGTTATTTATGAGTGTGGTCCTTCCTGTCAGTGTCCTCCTAACTGCCGTAACCGTGTTTCCCAAATTGGTTTGAGATTTCGTTTGGAGGTTTTCAGGACCAAGAATAAAGGTTGGGGTCTAAGATCGTGGGATCCTATTCGTGCTGGAACTTTCATATGCGAGTATGCTGGGGAAGTTATACCTAATGCTAGAGTAGAAGAACTTGGTGAACATGAAGATGAATATCTTTTCGATTCTACTCGTATTTATCAGCAGCTAGATATTTTTCCTAGTGATACTGAAGCTCCAAAGATCCCGTCCCCGCTTTATGTAACGGCAAGAAATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTTTCACGTGAAAATAAGACTGAATCGGATCTTCATATTGCGTTCTATGCAATTAGGCATATCCCTCCTATGACAGAGTTAACTTATGATTATGGAATAGTTCTTCCTCTCAATGTGAAGAAAAAGAAATGCTTTTGTGGATCTGTGAAATGCAGGGGTTCCTTTTGCTAA

Protein:

Promoter(3k):

>AM09G010580.1
AAAACATAGAATCAGGGGCACTTGCAGTTAGAAGCGCCCCTGTTGGTCTTACCCCCACTTGACAATCAGGGGCGCTCCTAGTAAAAAACGCTTCTGTTGGTCAGACTAACAGGGGCACTTCTAACTACAAGTGCCCCTGATTGTCAAAGTGCGCTAAGACTAACAGATGCGCTTGTTACTGCGAGCGCCCCTAATTGTTAGAGGCGCTAAGACCAACAGGGGCACTTTTTTTAGCGCTTCTGTTTCCTAATAATTAGAGGCGCTTGTTGTGCGCTCCTGTAGAAGGGATGGCAACATGAGCGCCAGATTTAGGGGTGCCCGAAAACGCTTACAATAGATAAAAAAAAGCGCCTCTAATGGCCTTTCCTATTGTAGTGGCTCCATGGTTTCATGGTATGTAGCTTATGAGGAAGCATGAAGCCTTAAGTTCAATTTCTCATTGTGCTATATTCTTGATTTTTAGCTATTATTAATCTTTAGATACGAAATACTAACAAATAAATGTAAGTATTGAACTTTGTGCTATATTCGTTACAGGGAACATTTTTACTTGCTGTCAAATTTGGAAAAATAATTTTCCCACCTTTTGTAACCCAAAAAAATTCCCCCAACTTTTTTTTATGATTAATTTTATCCAGGTATAGGGCGTTTCCTAATGGAATATAGTTGAATTATAGGGAACATTTTTATTTTCTGTCAAATTCTTTTTGCCACTTTTCCTCCATTTATTTAGTTTAGTATATAAAAATATATATTTTAAAAATATAAACCTCGGCTAGTCTCCGGTGGGCCCCTCCCACTGGTTTTGGCGCCAAACCCCCTACCCCCTCTTTTTTTAATCTCTCATCCCTCTTTTTTTTTCTATACTTTTATCTAAAGTGTGATATTAGACAACGTGTTTTGAGATATTTTAGAGTCAAAAAAAATTAATTGTTCAAATACGTAAAATATGTTTCTAAATAACCGGTTTGTTGAAATAAAATAGTAATTTCGTAATAAAGTACGTAAAGTGCAATGCTTAACTGTTCAAATACGCAAATTTTGTTCCTCATTAACCGGTTCGGTGAATAAAAATAATTTCATAACAATATGTAAAGTATGATGTTAAGTAGTGTGTTTCGGATGCTTTTGTGTTTGCAAAAACAAAAATTAACTATTCAAATATGCAAAATTTGTGCCTCAATAACCAGCGTGTTTTGGAGTATTTTAGTGTTCGAAAAAAAACTTAACCGTTAAAATACTCAAAGTTCATTCTTCAAAAACCGATTTGGTGAAAAAAATAATAATTTTGTGACAAATATATAAAGTGCGATTTTAAGCAACGTGTTTTGAGATACTTTAGCATTCAGAGGATCAACAAATAAGACTTTTTCGTATTGCAATTTTAAAAACAAATTTTAACAAAACAGAAATTCTGCATTAACTAAAGTTGTTGCCCAGTGCAACGCACGGATGCACACGCTAGTATAAAATAAATGTTTAAATATGTTTTAGGCCCCTGCAAATATAGCGTGTTTTGGTTTAAGCCCCCGCAATTTATTTTTTTTAGAAAAAACTATTTGCAAAATACAGTTTTTTGATTTAGGCCCTTCTGTACCCCCATATTGACCAAACAGACCATTTTACCCCTAGTTTCTCAAAAAAAATTCCGGAATTACGTCTTTATACATAAATCCGGAATGCATTTTCTTAATTTTTCCTGAATTACGTCTAAACACATAATTCCGGAACGTATTATTATTCCGGAATTATGTCGTTTGAGGTAATTCCAGAAATATCAATAAAAATACGTTCCGAAATTACGTATATTTAGATAATTCTGGGAGGCAAAAAATTAAAGTTTTCGGAATCATCAAAATTAGATAAATTCGGAACACATTTTTAAGATTCCGGAATTATCCTATATATGTGTTTTCGGAAAGAGTAAAAATTTGGAGCTCTAGTGAGATTTTAGTAAAAATGAGAGGGGTATTTTAGAGATAAAATGTATTACGGGGGTAAATCAAAAATCTATATTTTATAATGAGCTTTTAAAGATTTTTTTTTTGCACGGGACTAAACAAAAACACGTTATAATAAGAGGGACTTAAAGCATATTTAAGTCTAAAATAAAATATTTTCACCATCCCGTTTCACCCGAAGGCTCCCTTTGAGAGTTTTATACTTTTATTCACTATTAACACGCATGTCCTTTCTCTATCCAATCATGTTCCGCCACGTCAACACATGTTCATCAAACAGTACCATTCCGTGTGCTCACAACCATCTGATCACTTCTGAAGTCACGCAAGGACACAAACATAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGAAGTACGGAAGAAAGAAACTTTGGTTTGTAGAAGTTTTCACCCACATCGACTCAAACTGAACTGAAGCTCTGCAAAATCCACTTCAATCATCAAAACCCATTTCAGGTTTGTTTCATTTCTCTCTCAAAGTTTCAAGCTTTGCAATCCAATTTCGAACCTCGAACCCTGATTTCATTTTCTTACCCCCTTTTTTTAAAACCCTCTGATCTGATCTGTGAACGCCTCATCCCCTTTCTCCTCAGATTTAAAGCTTACATTTTTATTATATATTCTCTTTCCATTTTCTGTACATACAAGGTGGTCGTTTCTCTTGTTTTTGTGTGTGTCGTCGTTGTTTTTTTAATCTCTATTTTCTGACCATGATTCATTTCTAGAAACCCAATTATGTTTTTTATTTTTTTATTTTCTGGCTATATTTCTTTGCTGTTTTTCCTTATTTTGTGTGTGTGTGGGTGTGTTGTTTTTGGTCTCTGATTCCAGATTTGCTTGCATGTTACAGGAACTGTGTCAACTCCAAAGCTTGTATCTTGCAGACCTTGTACTACGATGTTTTGTACTTAGATTGTGTTATATCCAGCACTCCATTGATTTTTCCTAAACACAAAAGCTAGACAAGTTGTTAGCTTCCTCTTTTGTTTTTGTTGGGTGGACTTGTAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02182.20	SAD_SRA	263	414	1.60E-49
PF00856.31	SET	560	683	1.10E-21
PF05033.19	Pre-SET	443	541	1.40E-20

Gene family

Gene family	Subfamily
Transcription Factors Family	SET

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0032259	methylation	Biological Process
GO:0008270	zinc ion binding	Molecular Function
GO:0003690	double-stranded DNA binding	Molecular Function
GO:0016279	protein-lysine N-methyltransferase activity	Molecular Function

InterPro

InterPro term	Description
IPR036987	SRA-YDG superfamily
IPR003105	SRA-YDG
IPR046341	SET domain superfamily
IPR001214	SET domain
IPR015947	PUA-like superfamily
IPR007728	Pre-SET domain
IPR003616	Post-SET domain
IPR025794	Histone H3-K9 methyltransferase, plant

trEMBL

trEMBL term	Description
A0AAN9SH56	_

SwissProt

SwissProt term	Description
SUVH1_TOBAC	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

KEGG

KO	Description	Enzyme
K24405	[histone H3]-lysine9 N-dimethyltransferase	[EC: 2.1.1.368]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G73100	SU(VAR)3-9 homolog 3
Medicago sativa L.	MsG0780040323.01.T01	_
Oryza sativa L.	LOC_Os05g41172.2	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
Cucumis sativus L.	Csa013738	_
Glycyrrhiza uralensis Fisch.	Glyur000665s00020418.1	_
Codonopsis lanceolata	Cl_chr04_37620T	_
Arachis hypogaea L.	AH16G24660.3	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 like

Expression pattern