Gene detail

Detail information of Am09G009990.1 Annotation

Gene ID	Annotation
Am09G009990.1	myb domain protein 56

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G009990.1	mRNA	Chr09	40445450	40447789	-

Sequences

CDS:

>Am09G009990.1
ATGAGTTCCATGAAGTTTAACAATGGTGGTGATTTTTTCAATGGAGATATGAGTTTTTTCTCTTCTTTGGGTCAGGCTAGTGGGGTAGAGGGTAAAAAGACTGAAATGGGGGTTAAGTTTTTGAGTCCATCAATTTTTCAACCACTAGAGATCATGGGAACAAATAGAACTAAAGATGAAGGAGAAGGGTATTTTGGGGATGAGAGTAAAAACTTGTCTTTGAAACTTGGAGATGAAGTAGAAGATGGTAAGATCTCTGCTTCTGGGAAAACTGGGTACTCAAAACTTTGTGCTAGAGGTCATTGGAGGCCAGCTGAAGATGCAAAACTTAAGGAACTTGTTGCTCAATATGGTCCTCAAAATTGGAACATGATTGCTGAACATCTTCATGGAAGATCAGGCAAAAGTTGTAGATTAAGGTGGTTTAATCAACTAGATCCAAGGATAAACAGAAGGGCATTTTCTGAGGCAGAAGAGGAGAGACTTTTAGCTGCACATAAAATGTATGGTAACAAATGGGCTATGATTGCTAGACTATTTCCAGGAAGGACAGATAATGCAGTGAAAAATCATTGGCATGTAATCATGGCTAGGAGACACAGGGAACAATGTTGTGTTTATAGAAGGAGAAAAACCCCAGTTGAAAACCTTTCAAAGTGTTTGAAATTAACTCTGTCAAACAATGCAGCTAGTGATTCAACTACTATCTCAAGTACCATTGATGAATCTGCCTCAACTTGTACTAATCTCTCCCTCACTCCCTCTTCAGCAAAATTAACTCCTAATCCTTTTGATAAACTGAGTCCTTTTCAGAATCACCAAGGCTATGGATCACTAACTGGTCAATGTGGAGAAAGTGGGATGGTGAATTTTGACAAGTTTTTTGGAGCTAATAATAATAATCTTAAGCATGGACTACTAGGAAAGCTAATGGATGTGGACCACTCAAATTTTTCAGATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTGCAACCAATAGGGCCAAAATCACAATTTCTGGAGAAAGTGAAAACGTGGGTGGTGTTAAGATTAACATGTCATTCATTGATTTTCTTGGAGTAGGAGCTACTATATAG

Protein:

Promoter(3k):

>AM09G009990.1
AATGTGTTCTAGGGGTAGGTTAGGGCTTCGAGAAAATTTTAACTGTTCAAATACGCCAAGTTCGATCCTCAATAATCAGATTAGGCAAAAGAAAAATTAATTTCGTGACAAAACATGTAAAGCGCGACACTTATCAGTATGTCTTGTGTACTTTAGGGTTTGGAAAATTTTTTTATGTGCCTATCACAAACTCCTTCTTCATGATCAACAAACCTCCACGTGCTTCTGAAGACTATCACAAATTCTCAACAAGAAAGTTGTTAAAATAAGAGGGAAGTAATTATAGAGTTGAATTTAAAATAATTGGGAGATTCCAAATAATAATTTTATTTTTTTCCCTAAAAAATGATTTATTTTGGTTTTCATTTTTAACTTAAATTACTTAAGTGAGCATTTTTTTCATTTTAAAATCTAGCCTCGATATATGTCACTAATATTGTTTCATCACATAGCTTTATATGTGAGTTAAATTTGTTTTTTATATAAAATTCTCCAATAATATAGTACCTATCAAATACTTCAAGTACCTAACTAATCAAATTATGCATAATACTATCTATTTTTTCATATTGATATCCTGTGCATCGCACGGGGGGTAAGATCTAGTAAGTACTAGTATTTTTTTTTGTTACCGTGTTTTTGGTGTTGTAGTTTTTACCGGCTTTGTCGGTGACTAATCTACGTCGGGGAACCTGGCTGGCCACGTGTAAACCCGACTTTAACGGTCGATTGGGGTGGGATCCGAGTCCACTTACCATTCAAACCAACCCGTGTTGGTACTATAATTCCAAACTAACGTTAGAAAAAAAATAAGAAAACTGAATCACTATTCGAACTACTGATAAATATTAAAAAAACACGTGACAAATATTTGTCACTACCAGAAAAAGAACAAATAACTGTCACTGATATATAAACAAACACGAGACATATTTTTGTCATTGATAATTATAATTTTTGAAGACCACTATCTATCTTTTACTATCTACATTAATTTACTAATCTACTAAAACTAATCAATTTAACAGTTTGCTAAAATTTCAAACTAACGTTTTAGTCTCTTAGAAACGAAAACGAGAATACTTAATGACTATTCAAACTACGTACTAATAAATATTTAAAAGATACGTGATAGATATTTGTCACTGATATAAAAAAAGGAAAAATAACTGATATATAAAAAACACGGCACATATTTTCGTCATTGATACTTTTAGTTTTTGGAAACTACTGTAAATCTACTATCTATATTTTAGTATCTATTATAATCTACTAATCTACTAAAAATAATCAATTTAACCACTACGTACTGATAAATATTAAAAAAGATGTGACATATTTTTCACTGATACCTAAAAAAGGACAAATAACTGTAACTGAAATATAAAAACATGGGACAAATATTTGTCAGTGATAATTATATTTTTTTGTACAAATTATTAAAACGACAAATTTGATTATAATACTCATATTCGAAACAATTGTTTGTCCCTGATACATTAAAAAACACATAATAAATTTTTGTCACGTATAAATAAAAAAAACAGGACAAATAATTGTCACTTATACATAAGAAAGCAAGGACAAAAATATTTGTCACTATAAATATAATTTACTGTACAAATTTAAAACAGGACAAAAAATTGATCCAAATAATCTATTATTAGTTTACTTTAGTCTTGACGGAGAATAATATAATGGTTTCAACCGAGATTGTCGTATAGTAAGTCTTTTACTGGAAAACATGTATTAAAGGGTTGGAGATCATTTTGTCAAAAAATGAATTAAAGACTAACAATTTAACAAGAATATTTACCATTACAAACTAATTTTATAAATCACTATTCTGCTTTTTTGTCCCAACAAAAAAATATTTTCTCTTATATTTGTTTATATATGTGTATATATATTGTTTTTGAGTTCTACCGAAAACATCATATGTTGTTATTATGAAAAATCATATTTTTGGTTTTTAATATGTATTTACTTTTTATATATTCAGACCAATGAAATTCTGACCGAGTCAATTCATATAAAAAAGACACCGGTACATGTACTTGTACACGGGTATAGAGCTGGTATATAATGGTATATAAAGAACCAATGGGAGAAAAATAGAATAAAAAACATGGTTAGGTAACTTGAATTGAGATAGAAAAAAAAAGTCTAAAATAAGATTGTAGAAAAACGTGAAGGAGAACAGGTGGTGAGATTGATGTTTTTAACTTGGTTTGTTGGTTGGGTTTTGAAATCATACATATTTTCCGTTCCCTTTAAAAAAAAAAGCAAAAGTGGGTTACATAAACAGACAAACAAGATTCTGGTTTTCTGCTCAAACCCCAAGAGTGTGTGTGTGCAATGCGCAAGTAAGAAAAAAACAGTAACACCCAAAACACCACGCATGACAACGGACAACCCACACGAACGGTTCTCGAACTGCATGCACATCATCCACTTTTCCACACATTTCTCTCTTTCTTTAATACTGCAAAATCAGTCTCAAAATAAGTAACCTCTCTCTCTCTCTCTCTTCTCATTTCCTTTTACACAAACGTGTGACCTCGCTCGCATCTTTTCTTACCTTTATGTTTTTTTTTTTAAAAAAAAAATCTCTTTTTTCTCTCCTTTAAAACGTTGTAACTTGTAACTCAACTAACCCCACATTGAAAGTTCATACTCTATGTTCAACTTCTTCCATTTTTTTATTCTCATCCTCTCTCTTCTCTCTCTCTTCTGTGATTCAGTTTCACTCACGGGTTAATGAAATAGACTAGGGAATATTTTTACAACATACAACAATGCTAGTATTAAATCTTCTACCCTTCTGATTTTCTCATATTCTTCCTTTTTTTCTTTCATGTAATGGAGTAAGAAAAACAAACTGTTTTGTTAGTATTCTCATGCTTCATTTTCCCCTTCTAACATTTTGTTAGTTTCTAGGGAAAGAGAAGAAAGAACCCATTTTGTGATTTTAAAGTTGAAATCTTTCTTTCAGTTTCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	99	145	2.10E-31
PF00249.34	Myb_DNA-binding	151	194	2.10E-31
PF13921.9	Myb_DNA-bind_6	102	162	2.20E-22
PF13921.9	Myb_DNA-bind_6	154	201	2.20E-22

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0010597	green leaf volatile biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A8B8LD43	_

SwissProt

SwissProt term	Description
MYB56_ARATH	Transcription factor MYB56

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G17800	myb domain protein 56
Medicago sativa L.	MsG0780040266.01.T01	_
Oryza sativa L.	LOC_Os01g16810.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa002447	_
Glycyrrhiza uralensis Fisch.	Glyur000159s00010285.1	_
Codonopsis lanceolata	Cl_chr01_20080T	_
Arachis hypogaea L.	AH06G20790.1	Transcription factor MYB44 like

Expression pattern