Gene detail

Detail information of Am09G009880.1 Annotation

Gene ID	Annotation
Am09G009880.1	Cyclin/Brf1-like TBP-binding protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G009880.1	mRNA	Chr09	39959900	39981510	+

Sequences

CDS:

>Am09G009880.1
ATGGTGTTCTGCCCTCACTGTGTCAAAAACGTTCTCACCGAGCAACAGGAGGACGGTTACTTATGTTGTACTCTCTGTGGGAGGGTGTTGCAAAACCAGTTTTTTTCTCAGGAGGCAACGTTTGTTAAAAACTCTGCAGGGCAGAGCAAATTATCTGGCAGTTATGTAAGATTGGTTCAAAACGAGTTCTCTGCTTCCCGTCAAAGGACTTTAGATAGAGCTCTTGAGGAAATGAAATACTTAAGTTACAGGCTTGGAGTGCCTGATGAGAGTTTGTCCCAACAAGCTGCGAAGTTTTATAATATTGCACTGGATCGAAATTTCACCCGAGGGCGTAAATCAGAACTAGTACACGCCTCATGTCTCTATATTTCATTCCGGCTTGAAAATAAGCCATTCCTTCTTATTGATTTTTCAAACTTATTAACGACAAATGTATATGTGCTTGGAACAGTTTTTTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAACCTGTTGATCCTAGTCTTTTTATCATGAAATATACTACTTGTTTGTTAAAGCAAAGGAATCCGGCTGTCTCCCAAACTGCGTTGAACATTGTTGCGGGAATGAAACGTGATTGGATGCAGACAGGGAGGAAACCTAGTGGAATATGTGGTGCCGCATTATACATTGCTGCTCATGCACATGGTTTTAAGCACTCTAAGGAAGATGTTCTAAAAATCGTCCATGTATGCGAGGCAACATTGACAAAGCGATTGGTAGAATTTGAGAATACAGATACTTCTAGATTGACAATTGAGGAGTTGAATACAATGGCATTAGAGCATCAAAAAAGTCCAATCGTAAAGCCAAGCGGTGAATTTGGAGATTCTACTTCAAAGGATCTAGTGTGTGAGCACAAGAATACCGGCGCGGCCCATTTTGCACTTGGATTATGTGAAAAATGTTACAAAGATTTTGATAACCTCTCTGGAGGACTTGGTGGTGGTGGTTTGGACCCCCCTGCTTTCCAGCGCGCTGAGAAGAAGAGAATGAAGAAAACACTTTCTAAGGAAAGTGACGATGAATCTCATGATTTGGCAAAGGCATCAGATGGCGCATGCAAGGGCCAGAAAGAAGATTTGCCTGCCTCTGTGCTAGAAGGGGATAATGTTGAGCACGATTTCACTAAAGATGATGAGTCAAATAGAGAAGATGAAACCAGTGCGGAAACCAATGGTGAATCGGAACGTTTTTCTGATATCGATGATGGAGAGGTTGATGGGTACCTTGTTAACAATGAGGTTGAGAAGGAGTACAGGAGGATAATATGGGAAAAGCTGAACCGAGAGTATGTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGCAGCTGCTGCTAAGAAAGCTTTTGAAGCAAATTTTGAAAACTGTTCAGATGATCTTCTAGCAGCAAGAGAGCTTGCCGCATCTGCTACTGCAGCTGTGGCAAAATCCAGAAAGGAACTGAGGCAGAAACGAGCTCTTGAGGCCAAAAGTTCAGGGCCTGCTCTATCTGCTGCAGAGGCCGCTTGCCGAATGGTTACAAAGAAGCGGCTAAGTAGCAAAGTCAATTTTGATTGCCTGGAAAAATTATTTGAGTTGGATCCGGCAGATGCGGGTAATCCCAAGAAAGTACATTTTGATCTACCCTCTGATCATGAGGACAAATCTCCATCCAAGGTCGAAGACAAAAAGGATGATGAGCTAGGAGCAGGATATGATGAATATGAAGATGGTGACATGGGGGGTGAATATGATAATAATTATTATCCTGAAAATGATGATTCATATTTCCCAGAGGATGGTGCTTACAATTATTATGATGATGATGATCAGTACTGA

Protein:

Promoter(3k):

>AM09G009880.1
ATATAAACATATAAATGTAACCAATTGTAAAAACCATAATATTTAATAGCAATAATATAAAATCATAAAAACCAATAACCATAGCAATAATATGCTATCATAATACCAAACGCTATATACATATTTATAACCAATGTTATTATTGTATCATAACTAGATATTAAGTTTATTAAACTAAAACATTAATATCAAAACATTTTATTATTAATAAAATATATTTTTGTAACTTCCACACACTTGAATGTCATTATTCCAACAAAGTGTGGTGGGTGTTTATTAGTTAATTATAGTGAGTGAAGTGTGGGTGAGCGTTAACCAGCATTCCTTTCAATCTGAATGGGCAGTTATATTTTCTAGTGCTCGTAGGATTCAACCTAGTAGCCTTGTATGCACCATTTTTCTCACACGTCAAAATGACATCAACCTTACGTGTAGTCCGTTCGTTGTTGGATCTAGAGATGACAACCACACTATTGAGAGACTTCCCAATTACGTACCCAGGTCAATAGCTCATCACAAGTAGACAATACTTAAAAAACAACAGTCAATTAGATACTACTACCTACGTTCCTAATCTTTGGTACGTTTGACCTTTTATTTTTGTTCCAAAACAATTGTACTTTTAAAAACCCAATATGCAATTCACTAAATTTTTCTAAATATACCCTTTATATTTATTGTGTCTTTTAGAAAACCAAGACAACTATTAACCCTTATTTTGATTTCATTTACCCCAAGACAACTACAAATGGGGTATTTTAGTACCTAACTAACATAAATTAATTGTACCTTAATTTGTGTGTAACAACCAAAAGTACCAAAGATTAGGAACAGAGGGAATAGTAACTTAACAATAACAATGCATAGAAACTACAAAATAATGTGTACCTTCTTAGTTGTGAATGAACTAGTAATGTCAATAGAATAAACATTTGATTTTGTAATTACACCAGCCGTTGGCCCACTTGAAAAATTCTCTTCCATTCCGACCTGTTAAATATAAAAAAAAGCTGTTAAAATACAATTCAGCACAATCTAATACATTTATGGTACCACAACACCAAAAATGTCTGTTACCAAAGTATCAGGTGTACAAAGGGGAGTGTTTTCATTGTAACACACTCGGTACCTTAGTACCTTCTAATTTCGGTACTTTGGTACCAGACATGTAGTAGGCTGGTATCTTAGTACCGAAACTGGCTGGTATCAAGGTCCGAGTGTGTTAAACATAACATCCCCCCATAATTCAAATTTTTATACACTCAATACTTTGGTACTAAGGTATCAAATCAAACAAAAATGCAGAAAAAAGAACGAAAATCTAGTTTTCATAAGAAAAAAATGGTGTGTGGCAGGGGAGAGAACAAACCTTCTTTGATGATGTATTGTCAAGTTGTGAAAGTGGAAGATAGTGTGAGTGAAGAGGAGTAGGAGTTGGAGTTGGGCGGTGAAGAGACGAAGGTTGGGGAGAGTGTGGAGAAGAGGGAGGAAGAAACTTATTTAGTTTTAGAGGTATTTTAGTAACTTCATTGAGTTATGGGGAGTGGAAAAAGAATGGGCCGCATGAGTTTTCTTGGCGACTGAGAAATAATGTGGATCATGCTCTAGCTAAGGTGAGTTATTTCATGGCTATTGCTAAAGTTTATCATAATGTGATCATCTCATGTCCCACTTTGTATTGCAACTTTTTTACTATACTCCCTTTAGACTCAATGACAAGCAAAAACGCAACAAACTTTGGTCATTCAAAATATAAGCAAATTGTAATTAATTTTATCCTAATTAATGTTTGCATGAAAAAAGTTTTCAAAACAATTTAAATGTAGAGAGCACTCCATTCTTTTATGAATCAAGAAAGTTAAATGGTGTTAATGAACATTCTTTGTTGACGGTGTAACTTTTTTTACACTCACAACTAGTAACAATTCATGGTATGACATATAATGTGGTTATTTGTTGACTCACTTATTCTTAATGATATGTTATCTCGTAATTAATCAATAGTGTAAAACATTTATCCACCGACAATGCATATAAACTAAATCAGTTGTTGTACAAAATTTTTAACAATATCAGCCAATCACAAAAAAATACACTATTAAAAATGTTCGACTTTATCTAAACTACCTTAATTTTACAATAATATTTTATTGGTTTATTATGTAAATTTTTTTACAACTACACACCAATTGAGCCCATAAATTAAATCCAATTTATAATTTCAATCCTTCAATTTTTAATTGATTTATTTGGCGGTTTATTTAACCACCACTATCCATCATGGCTCAGCCCACGATGAACCCTAACTAACAATTCAAACACGATTTCCAGATGAGAAAGTGATTCCCTCCACAATGGACCCACTACTATTGGCCCAAAATTTCATAAATCCAACGGTTAATATTAAAGGTCAATCAAAAATTCAGAAACCCAAAACCCAGTGACCAAACCTCTTCTTCCTACGCAGTAACGCGCTACACCCATCTCCCAGCGCAGCCACCATCCGTTCAACCCCTTCCACCGCCGCAGGTGTGTGCGTCGTCGAATCGTTTTACGTCGCCGTCGCTCTCCGCATCCTGCTCTGTTGTCGCTCTCTGCGATCTACTCTGTTGAAGGTTCGTTTCTTTCCTTCACCGTATGCAAATATTCGACACAAATAACAAGTTTTTATCAGCTACTAATTAGGCGACTGATTATGGAGCATTGGATTTAATCAATGGCTTGGATTTCTTGACAGGAGTGACTGGAGGTATAAATGATGTATGCGTCGTAAAACCTCAACCTGAAACGTACGATCCTCTTCTTTTCTTCCTTTGAGCCGCACACTCCGTGCTTCCAAGGAGTGTCGAAGCTCGGCAGTTTAATTGAATTTCCCCGTAGTATCCAAATTTCTCTCAGTAAGTGTACAAATCGTTTTCTTTTAGTTGCTTTTTTTATTCCATTTATTCCTTCAATTTTTAATTCAAAACCTCCATCTCGCAGTTTTGTTTTGAAGGCACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00382.22	TFIIB	68	156	2.00E-30
PF00382.22	TFIIB	172	259	2.00E-30
PF07741.16	BRF1	414	540	6.40E-24

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0097550	transcription preinitiation complex	Cellular Component
GO:0000995	RNA polymerase III general transcription initiation factor activity	Molecular Function
GO:0001006	RNA polymerase III type 3 promoter sequence-specific DNA binding	Molecular Function
GO:0006383	transcription by RNA polymerase III	Biological Process
GO:0005634	nucleus	Cellular Component

InterPro

InterPro term	Description
IPR013150	Transcription factor TFIIB, cyclin-like domain
IPR000812	Transcription factor TFIIB
IPR036915	Cyclin-like superfamily
IPR013763	Cyclin-like domain
IPR011665	Brf1, TBP-binding domain

trEMBL

trEMBL term	Description
A0A1S2XT65	_

SwissProt

SwissProt term	Description
TF3B_MOUSE	Transcription factor IIIB 90 kDa subunit

KEGG

KO	Description	Enzyme
K15196	transcription factor IIIB 90 kDa subunit

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G09360	Cyclin/Brf1-like TBP-binding protein
Medicago sativa L.	MsG0780040262.01.T01	_
Oryza sativa L.	LOC_Os05g23940.1	transcription initiation factor IIB, putative, expressed
Cucumis sativus L.	Csa001479	_
Glycyrrhiza uralensis Fisch.	Glyur001577s00033502.1	_
Codonopsis lanceolata	Cl_chr03_02990T	_
Arachis hypogaea L.	AH13G58420.1	Transcription factor IIIB 90 kDa subunit like

Expression pattern