Gene detail

Detail information of Am09G009690.1 Annotation

Gene ID	Annotation
Am09G009690.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G009690.1	mRNA	Chr09	39388397	39392919	+

Sequences

CDS:

>Am09G009690.1
ATGCAAGGTTTTCCAGGTGAAAATGAAAATGCTTTGTCAGTTGTTGGTCCAAGGCCAATGGAATGGTCTACTGTTCCATATAATGCTCCTCATGCTGCTGGGCCAAATGGAAAGAAGCGGACTTCAAGTTTGGAATCGCCAATCATGTTACTGACGGGTCACCAGAGTGTTATATATACCATGAAGTTCAATCCAGCAGGATCAGTGGTTGCATCTGGATCAAATGACAGAGAAATTTTCCTTTGGAATGTGCATGGGGAATGCAAGAACTTCATGGTTCTAAAAGGGCATAAGAATGCAATTTTAGATCTTCACTGGACTACGGATGGGACACAGATAGTCTCGGCCAGCCCCGATAAAACACTGAGGTTGTGGGATGTAGAAACAGGAAAACAAGTCAAAAAGATGGTAGAGCATCTCTCATATGTCAACAGTTGTTGTCCTTCCCGGAGGGGTCCACCTCTTGTTGTCAGTGGCTCTGATGATGGAACAGCTAAACTATGGGATATGCGTCAAAGGGGTTCCATCCAAACATTCCCTGATAAATACCAGATTACTGCTGTTAGCTTCTCTGATGCCTCAGATAAGGTATACACTGGTGGTATTGACAATGATATTAAGGTATGGGATTTGCGTAAAGGTGAGGTTACCATGACACTTCAAGGTCATCAAGATATGATTACCGCTATGCAACTGAGTCCCGATGGTTCATACCTTCTTACAAATGGCATGGACTGCAAGCTTTGCATTTGGGATATGCGACCATATGCTCCCCAAAATCGCTGTGTGAAGATTTTGGAAGGACACCAACACAACTTCGAAAAGAACTTGTTGAAGTGTAACTGGTCACCTGATGGAAGCAAGGTCACAGCTGGGAGTTCTGATCGAATGGTTTACATCTGGGATACCACTTCTCGACGAATCTTGTATAAGCTTCCCGGGCACAATGGGTCTGTTAATGAGTGTGTTTTCCATCCCAGTGAACCTATTATTGGTTCTTGTAGTAGTGACAAGCAGATTTATCTTGGGGAGATATGA

Protein:

Promoter(3k):

>AM09G009690.1
TCCTCCTCCGACGGCCAACCAGCAGTCCTCGGACGAACGTTAACGCCGCCGTAGCACTGTAAGCCCCCTTTCTCTGAGTAATTCGCTTTATTTTTTTCGTGCTGTTATTCACTCACCCTCTTCTTTGATTTCTTCCTCATCTAAAAAGAAACTATTCCTAGAGAATAAAACCAGTAACGAATCTCATTTAGCAGTAGCACCTATATTGATAGAAGAAATCCAGTACTTTTATTCTATACTTGCCAGCTGAACTTGTATTTGATTTGACTCTCACACACACTCTTACTTTGATAGTACAGCGATTCTCGTATCATGGCTATAATCCTTTTTAATCATTAAGGAGTTAAATGGTTCTTGAAAATATTGTTTATATGCATATGGCTCAGAAATGTTCTGTAGGAAATAATACTTATAGAAGGTGGTTTGTTCTGCAGGGAATTCTTTTTCTTAATAATATAAGTATCAATGCTTGCCAAGCCAGTCAAATTCTTGTGATTGATTATTTTCTCATCTGTGATATTATTATATTTTTTATTCTTTGAAGCATGTGCTTGATGTGTTCTGTTCCAAAATATTCTCATTGTTCCAGTTTTTTTTCTTCCTCTTTGTCCTAAATATTCTTACATTATATTATCTGTTTTATATTCAAATAGATGGCAGCTGATTAATCTACATTGTATGTTATACCCAGAACTAGAATGTCCTCTCTTCAGTATCAGTATTCAGACTAGGATATATATATCAAATGAGAGGACCTTATCATGTGAGAGAGGAGAAAATATTGACCATTTGATTTATACAGGAGTGGTCAGAATTAAAACATAAAAGTCACGTGACTTTTAATTGGTCAAGATTAAATAGTTTACCTTGATTTGGGCTGGTTGATGGTCAGTCAAGGTGTGGTGATCCAATTTTATACCCTAGGGCTTATAGGCAAACAAGTGTCTATTGCAGCTATGTTAGATTTTATCAACTCAATGCACCACACACCAATGCGATCTCAGACTCAATCCAAGCTAAGGCATCAGTTTTTCACTTTTAAGTGTTTTTTTTTCCTCAACAACTTATGAAGTCCATTATATCCTCTGGAATTATGATATAAGGTTCTTCGTAAAAATCTTTTTATCTTTTTTGCTTGCAAAATCATTTTCATGTTTTTACATACTCAACGCAGTAAAACCCCAATTACATGCTAACCAAAAGTTTCCGGCTTTCCCTTGCATTAGTAGGATGCAGGCTTTGAATTGGATCATATCTCTACAATATTTCCCCAGCACTGATAGGTTTTTCAATCAAGTTGTATCTCACTTTTGTTCACTAGATTTTGTTAATACTATGTTTAGGGTAAATTACACTCCCCTCCCTTGAAATAAGCTTGAATTACACTCTCCCTTCCTAGTTTTATGTTAAAATCTACATTCCCCTTTCCTGAAATGTAAAATGTATTACATTTAGTCAATTGAGGCATAAATGAACATTTTAATGGCGGTGAACGACTTTGAATGATCCTTCCAATAATTTTTCTGCTCATAACAGTTTTCAATGTCATTGATAACTAAATCTGAACGCTCGATTGGTGATTTTGAGACAGTAGAGTCAGAGGATAAAATGAAGTTTTAAATATCCATTTTAGTGACTTTAAAAAATGTCTAAAATCTTTATTCTATGTTTTATTCTTTAATAATTGATAGTAGAAGTTCAAAACTTTATGTTAATGATATTGACAGCCAAAATAGAGAAAAAAGATGTGCATAAGGAGTTTGGCTATATTAAAATGAATCTAAGTGTAACATATATTTACTTATCAAGAGAAGGTAGTGAAATTCAAGCTTCTCTTAGAGGGGACAATGTAATTTTCTCTATTATTTATATACTATCAGAACCTGTTTACAACTTTTTTTATGCTCATGAAAGACCCTTTATGTACCCTTATAACTAACTGCAATTTGGCATTCAAAGTAATTTATTGCTTATGATGCGAAAAATTTTCATTTGGATGAGGATTGTTGTGTTATAGATAGTTTTATTTGATAGGGGTGTGGGGATAAATCCTTAGAACTAAACTGAATTGAACCACATATAACCAAATTTTTTAGAAATGATAATTTTAAATCCAGTTTTTATAACCACAATAGATACAGATTTTTTCTTACATGTGCAGTTCAGTGATCCACTATTAATAAACCGAACTGTTTGATTTAGAATTTTGTAAATTCACAACTTTTACCTTCATCATCTGAAGCATGGGTACTCTGAAGTTGAAGGTGTACATGTACTGGAATGTTGGGTCTTGTTTGGTGCTACAATCACCAAACATCAATTCACTGCATCGAAACTCATTTTGCAACCATCCCCTTCTTGCCGTGAGAGACATTAAAGTTCATCTCCCTCTCCGTTCCATGAAAAACGTAAGCTCGGCTCTAAGAGAGCTGAAGTTTTAGTTTTTATACATACAAATCTTTTTGTCTCCTCTCAAGAAAAAGTAAGGAATATAATGGTAGTGAACGCAAAAAATGGGATATCGGCTTAAATGGTTGGGATCCACTTGAAGGGGCTGACATTCTTGAAATTGCTAACTTTATGAATCATATTAGGTTCTTTTCATGGATGCCTATACAATGGTTAATGAAATGATGACATCGACACTGTAAACGTTTGGTATTCGTCATCATATTTAGATTTTATGATGTTAATTGTTGAAAAATTACATATATTGAAGACATCTCTTGTGTCCAACATTGACACTTCAATTACTTCCATTTTCTCAAATTATTATCGGTATCTCCTTGTCAGTGTTGTGTCTGGTGTCTGTGCTTCATATTTGTGAGATGTTTTGTTGTCATTTTGAATAACTCAATCTCCTTTATTGGTGGCAATTTTAGATGTGTGTCTAGTCTTTTTGATATTTTACTGCTGACTCTCTTGATTCTATTTCAGTGTTGGGCACTGGGGCTTGTACAAATTGAAGTTTGTTGGATTTAATTCTAAGCAAAGGTCAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	89	126	1.80E-46
PF00400.35	WD40	215	252	1.80E-46
PF00400.35	WD40	261	302	1.80E-46
PF20426.1	NBCH_WD40	197	264	5.20E-15

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0071013	catalytic step 2 spliceosome	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0006338	chromatin remodeling	Biological Process
GO:0004402	histone acetyltransferase activity	Molecular Function

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A2K3MQM3	_

SwissProt

SwissProt term	Description
SNR40_BOVIN	U5 small nuclear ribonucleoprotein 40 kDa protein

KEGG

KO	Description	Enzyme
K12857	Prp8 binding protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G43770	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0780040233.01.T01	_
Oryza sativa L.	LOC_Os06g44370.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa000813	_
Glycyrrhiza uralensis Fisch.	Glyur000255s00016811.1	_
Codonopsis lanceolata	Cl_chr07_32410T	_
Arachis hypogaea L.	AH16G26400.1	U5 small nuclear ribonucleoprotein 40 kDa protein like

Expression pattern