| Gene ID | Annotation |
|---|---|
| Am09G008750.1 | DEAD/DEAH box helicase, putative |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G008750.1 | mRNA | Chr09 | 35759444 | 35782442 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00271.34 | Helicase_C | 470 | 575 | 4.50E-21 |
| PF00270.32 | DEAD | 290 | 428 | 2.70E-16 |
| PF02559.19 | CarD_CdnL_TRCF | 140 | 240 | 1.40E-15 |
| PF04851.18 | ResIII | 266 | 427 | 5.70E-08 |
| PF03461.18 | TRCF | 672 | 762 | 3.00E-07 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0006281 | DNA repair | Biological Process |
| GO:0009507 | chloroplast | Cellular Component |
| GO:0005524 | ATP binding | Molecular Function |
| GO:0016787 | hydrolase activity | Molecular Function |
| GO:0003676 | nucleic acid binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR037235 | TRCF-like, C-terminal D7 domain |
| IPR005118 | Transcription-repair-coupling factor, C-terminal domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR036101 | CarD-like/TRCF, RNAP-interacting domain superfamily |
| IPR003711 | CarD-like/TRCF, RNAP-interacting domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XS48 | _ |
| SwissProt term | Description |
|---|---|
| Y3206_ARATH | ATP-dependent DNA helicase At3g02060, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| K03723 | transcription-repair coupling factor (superfamily II helicase) | [EC: 5.6.2.4] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G02060 | DEAD/DEAH box helicase, putative |
| Medicago sativa L. | MsG0780040105.01.T01 | _ |
| Oryza sativa L. | _ | _ |
| Cucumis sativus L. | Csa020938 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur002140s00029373.1 | _ |
| Codonopsis lanceolata | Cl_chr05_01200T | _ |
| Arachis hypogaea L. | AH16G28650.1 | uncharacterized protein LOC101489915 like |