Gene detail

Detail information of Am09G007330.1 Annotation

Gene ID	Annotation
Am09G007330.1	Cyclic nucleotide-regulated ion channel family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G007330.1	mRNA	Chr09	31263448	31268768	-

Sequences

CDS:

>Am09G007330.1
ATGCCCATCGGTATCTTCTCCTCTCTCCCTAGGTGGATTGGTGGAAAGTTGTTGTTGGGAAGGAAACCTCGGAACACAAACAACAACGTTGGAGAAAGCGGCAGCGAAACCATAACAACAGATGAAAACCCAATAACAAGTGTAGTCGAATGTTACGCATGCACACAAGTGGGAGTACCGGTATTTCACTCAACAAGCTGTGACAGCTGTCATCAACCACAATGGGAAGCATCAGCAGGTTCATATCTAGTTCCAATTCAGAACCGACCGGGGAAAATTGCAAGGGCGGTGAATTCAGGAACATTCGGGTCGGTTTTAGATCCGAGGAGTAAGCGCGTGCAGGTATGGAACCGCGCGTTGTTATTAGCGCGTGGTGTAGCGTTGGCGATAGACCCGTTGTTTTTTTACGCGCTGTCGATAGGAAGGGAAGGATCGCCGTGTCTGTATATGGATGGTGCATTGGCGGCGATGGTTACGGTGGCGAGGACGTGTGTGGACGCGTTGCATTTGGTTCATATGTGGCTGCAGTTTAGACTTGCTTACGTGTCAAGAGAATCACTTGTGGTTGGTTGTGGCAAACTTGTTTGGGACCCACATGCTATTGCTTCTCATTACCTCAGGTCCTTCAAGGGTTTTTGGTTCGATGCCTTTGTTATTCTTCCCGTCCCTCAGGCTGTATTTTGGCTAGTAGTACCAAAATTGATAAGGGAAGAACAGATAAAAATCATAATGACCACAATGCTATTAATGTTTTTGTTCCAATTTCTCCCAAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTTACAGGCTACATCTTTGGCACTATTTGGTGGGGCTTTGGTCTCAATCTCATTGCTTATTTCATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTTCTTGCGATTCAACGTGTTGCATCGTGCCTTCGGCAACAGTGTGAAAGAACTCCTGGATGCAATCTCTCTCTGTCATGCTCAGAGGAGGTGTGTTATCAGTCTTTGTTACCACCAGGCACAATAGGAAATCCATGTGGTGGAAACTCATCAGCAGCAGTGGTAAGAATGCCTTTGTGTTTGGATGTTGATGGACCTTTCCAGTATGGGATTTACCAATGGGCACTCCCAGTCATATCTAGCAACTCATTGGCTGTCAAGATTCTTTATCCCATATTTTGGGGTTTGATGACCCTCAGTACTTTTGGAAATGATCTTGAACCCACGAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATTGTACTCAGTGGACTACTTCTTTTCACTTTGTTGATTGGTAACATCCAGGTGTTCTTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGCCGTGACATGGAATGGTGGATGAGAAGGAGGCAGTTGCCATCGCGATTAAGACAAAGAGTTCGTCATTTTGAACGTCAAAGATGGGCTGCTATGGGAGGAGAAGATGAAATGGAAATGATCAAAGATTTGCCTGAGGGTTTGAGGAGAGATATCAAACGCTATCTTTGCTTGGACCTCATTAAAAAAGTACCTCTCTTCCAAAACTTGGATGATCTTATTCTTGACAACATTTGTGACAGGGTGAAGCCTCTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGATCCCGTGCCCAGGATGGTGTTCATCGTTCGAGGACGCATAAGGAGAAACCAAAGTCTCAGCAAAGGCATAGTAGCCACTAGTGTCCTCGAACCTGGAGGTTTTTTAGGCGATGAACTACTTTCTTGGTGCCTCAGGCGGCCATTTATCGATAGGCTTCCAGCTTCTTCAGCCACATTTGTGTGTCTTGAATCAACAGAAGCATTTGGCCTTGATGCTCAAAATTTGAGGTACATAACTGATCATTTCCGCTACAAATTCGCGAATGAGAGACTAAAGAGAACAGCAAGATACTACTCATCGAATTGGAGAACATGGGCTGCTGTTAACATTCAACTCGCTTATCGGCGTTACAGGCAGAGGACTAGAGGTCCAGTGACTCCTGTAAGGGACAATGGAGGCACGGAGCGGCGGCTCTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA

Protein:

Promoter(3k):

>AM09G007330.1
CTTGAGCTGTAGTGTTGTATGCCATTGATTTCCAAGCTCCATCACTTTGGTAGCCCAAACTTCTTTGGTCTCTAACTATGTTAGCTAATGCACGTTCCATTTCCAAATTCCATGTGAAATAATTTCTTGTATCCTCTTCCATCTTTCTTTTTCCTATTGGCTTGCTCTTAACTTTGGATGAATCCATTTCTCTAATAACTCTAAGTACTTCAGTGTACTGCATTAATTAGATACACAGATATGGTATACTAAAACAAATAAAACTCAAATTCTGCATACCCCAGAAGCATGAAACATGCTACTGCTTCTTCTATCTTGTGTCACAATCCAGCTACTTAGCCACCCAACAGTAAATGAGAAAAAGCAGAACAAACATGCCATTGCAGTTTTTGCTGCAATAGCAGTTGCAGCTGATGCTACTGTGATAAAAAATGGCTTGTTTCAAAGGAAAAATAGAGACAAAACAATATTCCTACAGTAAAAATGCAGAGTCAGGGAATAGCATAAAAATATTCATGCTCTCCAAAACCTCATCACTAATCACAAATTCACAATGATTCCTGAACTATGACAAAATGCAGAATCAGAATCCTTGCAATAATAACTCATTCCTATACTCACTTTTCTTTGCAAAAAGTAAACAACAATGAAGAGACAACTACAACAAAGATCAATGCAAGAAGATCCACAATGTCTGCCCATTGTCAAGAACATGAAGGACTCCCCCCTAAGTAATGTTTCTTCTAGCTTGATAATCAACAAACACGCTCATTGCCAAAGTTTCGCGAAATTGCTTCCAAAGGTGCCAAACTGTTAAGACATTTTTGCCATTATTAGGTATAGACCATATAAGGTAGCAGACAAACACTGCAGAAGCTTTGAATATGAGCTGGTTATGGCTAGTTACATAGAGAACTACTGAGCTTTGAATTTAAGCCGAAGTCTCCAAATCAATACAAAACACCTTCCCCATTTCATTCTCAAGATGTTTTCATCCCAATTACAGTTTATTCAACTTTCATGATACCACAAATCATTCAATTTTATAAATACAAAAAATACAAACATAAAACCATAAATATAAGGAATAGAACAGTTTGAAGTATCCCTTATTTTTTCATAATATTAATAATGCTACTAACTTGAACTTGGAATGTATATACCATTGCAGGTGTAGATAAACCGCAAGTCACATGTACAAAGTTACGTATAATGGAAATTAATTTCCCAAAATGAATATAATGGAAACATATCCAAAGGTTTCATATGTTAATTCATGAATATAACATAATGGATATTAATTTTCCCATAATGAATATAACAGAAACAGAAACATAGCTGAGAACAATTACACAAAGCAACAACATAAACTATTCAGAGAAATCAATTCAGAAATTGGTTCAGAAACAATTCATCCATAAGTTACCAGCTCAAATCAAATCGAAAACGACACACAGGTGAATCAAGAAGAAGATAGTGCATAGTGACGAAGATGATTTCTGCGAGGAATCGAGAGTGGGAGAGAAATTGCTGATGAGATTCTGGAGTAGAGTGAGAAGGAAGCAGGAACTGATACAGAGAAATCAATTACTTGCGATTCCGGAGTAGAGTGGAGTGCGATACAGCAAATCTGGATTTGATGCGAGGAAGAAGAAGACAATCCAAATTAGACTCAAAACGAGGAAGAGGAATCTCAAATCGAAGAAGTGGATCTCAAATCGAAATTCTGGATGAAGATTCGAAATTTGTAGTCTTGTATCCATGAGCGAGAGAGCAAAGAGTGAGAGAGCAAAGAACGAGAGTTCTGGAGTGAGAGAGCGAAGAGCGCAAGGTTGGTGAGCGCTGGAGCCAGAGTGAGAGAGGAATTAGAATTCTCTCATTTTAGGTGTCATTTCAATTTCTTCATTTTTACCCACCACTAAATGCTTCTTAAAATTACAGCATTTTAAAAATTCTATTTATTTTTTACCCAAACAAGATATTTCAAACCAATGTATTTTAATTTCTTTGAAAAATTACATTACCCTCTACAAATACTCTATCCAAACACACTCTTAGACATGTGTTTGGTACGTAATGTGATCACGGTGAACTAGTGGGAGCTCTCACTTTATTTTTTAGAACGAGTAAATTAGTGATATGGACAAAAAACCTAACCCATTCTTTTCTAAAAGGCTAAAGGCTTAAATATATGTTACCCCTGCAAATATGATCATTATCCATTTACCCCCTGCAAAAAAAACTTTTAAAATAAAACTTGGAAATATTAAGTGTTTCTAGTTACCTCTGCTGTTAGTTTTAGCTAACATCGTTAAGTTTATGCTGACTTGCCTGACAAAAAGAAAATGTGTCCAATTAGATTTTAAACGTGATATTAATTGCTTTTCCGTTTTACACTAGTATTAATAATGAATACATTAATATTGAGTCATAGGTCTCCGCTATACATTTATGACAATAATTAGTATTTAATTTTTAACAAAATAATTCTGTAAAATTATTATTTTAAAAAAAATTATGTGAATCAACCTAAAATATGACAATTAATATGAGACTGAGAGAATAAAATAGAGAATTAATTAGAATGCAAATTGAATTTGCAGAATCTTGAATGGAACTGGAATACAGATGAAACAGTGCAACTAGCTAGAGAGTTAACCAAAGAACATGCACGAATCATCATAAAAAGTTGTGACTTGTGAGTTGTTTGAGCCCCAATAGTACATATAACCGCAATGAACAAACAAAGAGCAGAGCTGAAAACCAACCCCACCACACCACACTCTCTACGTTGCGTAACCGTAACCTCTTCACATGACATGCAAAACTAATCCACCCTTATTCTCCTTCACTTCATTTCTATGATCATCATCATCATCTTATATACTCACTCTCTCTCTCCTCTTCCCAACACCATGTGCTCTTCCCTTCACTCTCTCTCCCATCATCAAACACACTACTTCCTCTCTCTCCCATGGTAGTTCCTCTCCATCATCAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	114	440	5.50E-13
PF00027.32	cNMP_binding	542	631	1.90E-06

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0022834	ligand-gated channel activity	Molecular Function
GO:0015079	potassium ion transmembrane transporter activity	Molecular Function
GO:0020037	heme binding	Molecular Function
GO:0009055	electron transfer activity	Molecular Function
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0A1S2XN35	_

SwissProt

SwissProt term	Description
CNGC2_ARATH	Cyclic nucleotide-gated ion channel 2

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G15410	Cyclic nucleotide-regulated ion channel family protein
Medicago sativa L.	MsG0780036387.01.T01	_
Oryza sativa L.	LOC_Os03g55100.1	cyclic nucleotide-gated ion channel 2, putative, expressed
Cucumis sativus L.	Csa009667	_
Glycyrrhiza uralensis Fisch.	Glyur000709s00024188.1	_
Codonopsis lanceolata	Cl_chr03_38680T	_
Arachis hypogaea L.	AH14G44500.1	Cyclic nucleotide-gated ion channel 2 like

Expression pattern