| Gene ID | Annotation |
|---|---|
| Am09G007020.1 | polypyrimidine tract-binding protein 1 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G007020.1 | mRNA | Chr09 | 30198105 | 30207769 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00076.25 | RRM_1 | 21 | 71 | 2.40E-20 |
| PF13893.9 | RRM_5 | 227 | 326 | 6.30E-13 |
| PF11835.11 | RRM_8 | 242 | 320 | 1.60E-12 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0000932 | P-body | Cellular Component |
| GO:0009845 | seed germination | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| GO:0050684 | regulation of mRNA processing | Biological Process |
| GO:0006417 | regulation of translation | Biological Process |
| InterPro term | Description |
|---|---|
| IPR035979 | RNA-binding domain superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR034794 | PTBPH1/PTBPH2, RNA recognition motif 3 |
| IPR034793 | PTBPH1/PTBPH2, RNA recognition motif 2 |
| IPR034792 | PTBPH1/PTBPH2, RNA recognition motif 1 |
| IPR021790 | PTBP1-like, RNA recognition motif 2 |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| trEMBL term | Description |
|---|---|
| A0A1S2XN07 | _ |
| SwissProt term | Description |
|---|---|
| PTBP1_ARATH | Polypyrimidine tract-binding protein homolog 1 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G01150 | polypyrimidine tract-binding protein 1 |
| Medicago sativa L. | MsG0780036298.01.T01 | _ |
| Oryza sativa L. | LOC_Os08g33830.1 | polypyrimidine tract-binding protein, putative, expressed |
| Cucumis sativus L. | Csa015458 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000119s00012155.1 | _ |
| Codonopsis lanceolata | Cl_chr03_37750T | _ |
| Arachis hypogaea L. | AH20G31830.1 | Polypyrimidine tract-binding protein homolog 1 like |