Gene detail

Detail information of Am09G006620.1 Annotation

Gene ID	Annotation
Am09G006620.1	RNA helicase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G006620.1	mRNA	Chr09	28759853	28772678	-

Sequences

CDS:

>Am09G006620.1
ATGGAGAATGATGGAGCTGCTGCCGGATTTGTTGACTTAGACAAGACCACAGTAACTTTGGAACCAGAAAAGTCTTCCACCGGTGGACTCTATGTCCCCGGAAAGGATAGGATGGTGTACGTGGCTCCAGAGAGAAAATCACGTTTTGGACTTGATACCCTTGCCATTGCAAAACGGGGAGAGTCTCAACTTGATGGGGCATTCAAGGTGCCTAAAGAAAGAACCATTTCCATTGCAGCTACTGCAGAGGATGAAGATAAGTCTGAGTCTTCTATTGTTGTTGATGATTCTGAGCACGGTGGGCATGCCGGTACACGCAGACATGCTAATAGGAGATACCGCGAGTCTACCAGTGAATCGTCACATGCTGATAGCTCTCTGACGGATGATCGCCATGGGGATACATATAGGACCCGCCGTTCAACTGATCACATAGGTTCAGATGTTCCTGCTTCACCATCTGGATATGACAGAGAGGATCGTAGAAGTGAGAGGAGGCATTCTGGAGATGATTCAAGAAGTAGTAGCAGAGGAGTGCGGCATGCAAACCGTTATGAAAGTAAGGAATCTTATTCAGAAAGGGATTCTCATAGTAGATATGACCGTGAATATGGTAGAAAGCGCAAGAGATATGAAGGTTCAAGGAGAACACCTGGCAGATCTGACTGGGATGATGGCCGATGGGAATGGGAAGATACTCCACGAAGGGATGGTGTTTCTAGTTCTAGACGTTATCAACCTTCTCCATCCCCAATGTTTGTTGGTGCCTCACCTGATGCACGATTAGTTTCTCCATGGTTGGGGGGCCATACTCCTCATTCACGCTTTAATTCACCCTCTCCTTGGGACCATGTTTCTCCATCTCCTATTCCGATACGTGCTTCTGGTTCTTCAGTCAAATATTCTGCTTCTGGATATAATGGAAGGTCACATAAACTTACTTTTTCTTCAGAAAATTCAAGCGCTTATGAGGGTGAAATAGGAGAGAAGTCTGAATTGGGTGAAGAACACAAGTACGAGATTACAGAAAGCATGCGTAGAGAGATGGAATACGATGCTGACCGAGCATGGTACGATAGAGAGGAAGGTAGCACGTTTGACTCCGATAACTCAACGGTTTTTCTTGGAGATGAGGCTTCGTTTCAGAAAAAAGAGGCTGAGTTGGCCAAAAGACTGGTCCGAAGAGATGGGACTAAGATGTCGCTGGCTCAGAGCAAGAAATTGTCTCAGATGACAGCCGATAATGCTCAATGGGAGGATCGGCAACTGCTAAGATCAGGTGCTGTTAGAGGCACCGAGGTTCAGACTGAATTTGATGATGAGGACGAACGCAAGGTCATTCTTCTTGTACATGATACAAAGCCCCCTTTTCTTGATGGCAGAGTTGTTTTCACCAAGCAGGCGGAGCCAATTATGCCAATAAAAGATCCAACATCCGACATGGCTATAATGTCTCGTAAAGGATCTGCTCTGGTCAGAGAAATCCATGAGAAGCAGAGCCAGAATAAGTCTCGCCAACGCTTTTGGGAACTAGCAGGCTCAAAACTTGGTGATATCTTGGGCGTTGAAAAAACTGCAGAACAGATTGATGCAGACACTGCTGTAGTTGGAGAAGATGGTGAAATTGATTTTAAGGAGGAAGCCAAGTTTTCACAACATTTGAAGAAGGGAGAAGCTGTGAGTGATTTTGCTAAGTCAAAAACCCTTGCAGAGCAAAGACAATATCTGCCTATTTTTTCGGTGCGAGAAGAGTTATTGCAGGTGATTCGTGAAAATCAAGTGGTGGTAGTTGTTGGAGAAACTGGTTCGGGAAAGACAACCCAATTGACACAGTATCTTCATGAGGATGGCTATACTATCGGTGGTATAGTAGGCTGCACCCAACCAAGGCGTGTGGCAGCTATGAGTGTTGCCAAGAGAGTCAGCGAGGAGATGGATACAGAGTTGGGCGATAAAGTTGGCTATGCGATACGTTTTGAGGATGTGACTGGGCCAAAGACTATTATAAAGTACATGACAGATGGGGTACTTCTACGGGAAACACTTAAAGACTCTGATTTAGACAAGTATCGGGTTATTGTCATGGATGAGGCCCATGAAAGATCATTAAGCACAGATGTTCTTTTTGGAATATTGAAGAAAGTAGTAGCCCAGCGACGTGATTTCAAGCTGATTGTCACATCAGCAACTCTGAATGCACAGAAATTTTCAAATTTTTTTGGAAGTGTACCGATTTTTCATATTCCTGGGAGAACATTTCCTGTGAATATATTATGGAGTAAAACTCCATGTGAAGATTATGTTGAAGGTGCAGTGAAGCAGGCTATGACTATTCACATAACCAGCTCTCCAGGTGACATCCTTATCTTCATGACCGGCCAAGATGAGATTGAGGCAGCTTGCTATTCCCTTGCTGAAAGAATGGAGCAGATGATTTCATCTTCAAATAAAGCAGTCCCCAAACTCTTGATTCTTCCCATTTACTCTCAGCTTCCTGCTGACTTGCAGGCCAAGATATTCCAGAAAGCTGAAGATGGTGCTCGGAAATGCATTGTGGCCACTAATATTGCCGAGACATCATTGACTGTTGACGGTATCTACTATGTTATAGACACAGGCTATGGTAAAATGAAGGTGTACAACCCTAGGATGGGTATGGATGCACTCCAAGTCTTCCCTGTTAGCCGCGCTGCTGCCGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCTGGTACATGCTATCGGCTATATACTGAGAGTGCTTACCTAAATGAGATGTTGGCCAGTCCTGTTCCGGAGATTCAGAGGACTAACCTTGGCAATGTGGTGTTGTTGTTGAAATCTCTCAAAGTTGAAAATTTACTTGATTTTGATTTCATGGATCCACCTCCCCAGGATAATATCCTCAATTCTATGTATCAGTTGTGGGTGTTGGGTGCCCTTAACAATGTGGGGGGATTGACCGATCTTGGGTGGAAAATGGTTGAGTTTCCCCTGGATCCTCCGCTTGCTAAGATGCTTTTGATGGGCGAACAGTTAGAGTGTCTTGAGGAGGTTCTGACAATTGTTTCTATGCTTTCAGTACCATCTGTTTTCTTTAGACCAAAGGACCGTGCAGAGGAGAGTGATGCTGCACGCGAAAGATTTTTTGTGCCAGAATCCGATCATTTAACCCTTTACAATGTTTATCAGCAATGGAAACAACATGATTACAGAGGTGATTGGTGTAATGATCATTTTTTGCATGTTAAAGGTCTAAGAAAGGCTAGAGAGGTAAGATCCCAGCTGCTTGATATTCTCAAGACGCTGAAGATCCCCTTAACCACATGCTGGCCCGATACAGACATTGTCAGAAAAGCAATTTGTTCAGCCTACTTCCACAATTCGGCAAGATTAAAGGGTGTGGGAGAGTATGTTAACTGCCGTAATGGAATGCCATGTCATCTACACCCCAGTAGTGCTCTCTATGGCATGGGTTGCACTCCTGATTATGTGGTTTATCATGAGTTAATCCTGACCACGAAGGAGTACATGCAGTGTGCCACAGCAGTGGAGCCCCAGTGGATGGCTGAACTGGGACCGATGTTTTTCTCCGTGAAGGAGTCTGATACATCACTACTGGAGCACAAAAAGAAACAAAAACAAGAAAAAACAGCCATGGAGGAGGAGATGGAGAATTTGAAGAAGGTGCAAGCAGAGATGGAGAGAAGAAATAAACAGGAGGAGAAGGAAAAAATGGCTAAGAATCAGCAGCAAATTTCAATGCCAGGTTTCCGAAAGGGTTCCACATTCTTGAGACCAAAAAAGTTTGGTTTGTAA

Protein:

>Am09G006620.1
MENDGAAAGFVDLDKTTVTLEPEKSSTGGLYVPGKDRMVYVAPERKSRFGLDTLAIAKRGESQLDGAFKVPKERTISIAATAEDEDKSESSIVVDDSEHGGHAGTRRHANRRYRESTSESSHADSSLTDDRHGDTYRTRRSTDHIGSDVPASPSGYDREDRRSERRHSGDDSRSSSRGVRHANRYESKESYSERDSHSRYDREYGRKRKRYEGSRRTPGRSDWDDGRWEWEDTPRRDGVSSSRRYQPSPSPMFVGASPDARLVSPWLGGHTPHSRFNSPSPWDHVSPSPIPIRASGSSVKYSASGYNGRSHKLTFSSENSSAYEGEIGEKSELGEEHKYEITESMRREMEYDADRAWYDREEGSTFDSDNSTVFLGDEASFQKKEAELAKRLVRRDGTKMSLAQSKKLSQMTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIMSRKGSALVREIHEKQSQNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAVVGEDGEIDFKEEAKFSQHLKKGEAVSDFAKSKTLAEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKTTQLTQYLHEDGYTIGGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPKTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILWSKTPCEDYVEGAVKQAMTIHITSSPGDILIFMTGQDEIEAACYSLAERMEQMISSSNKAVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLASPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGEQLECLEEVLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTTCWPDTDIVRKAICSAYFHNSARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVEPQWMAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEEEMENLKKVQAEMERRNKQEEKEKMAKNQQQISMPGFRKGSTFLRPKKFGL*

Promoter(3k):

>AM09G006620.1
GAGGAAAGGTTGAAATTAGGGTTCCACCCTTAACACTTGCCTTATATACTTCCTTTTATTGTTTACTTTATTTTAAAACTAAATATTTCAGATTACTATTCACACCTCTTTGTTTAATTCGTGCAACCCATAAATACCCTTGAACGAAAATAGTCCAATATATTTTATTTTTTTGTTATGCTAATCATGCATTATATTATATTGAGTATTGAAAAATCATATCATAGAAACTGTTTAATAAACTATTTTTGAAAAAACTATACATGTTTTTAATAGAGATAGCTTTTATAGAGTGAGTAAAAGAGCACTATGAAAAATATTATAATGGTTTGAAATCTAATATGAATCCTTATTCAATTAGCGTTTACTGTTAGTAATCAATAGCTATTGTAATCATGAATGCGTAAGGCAATATCAGATAAAATATTATACAATACAATCTAATACACGTGTCTCAAAAAAATTCAATAACTAGAGTTTTGATGACTATGATTGGTAGTAGAATATGGGATCTCAACTGGATTTTTAACATATTGATCAGTACAATGAATATCTCTCTATATAATATATATTCTACTACATTGAAAAATTTATACATATAAACTTTCAACATTAATCTGACTGGCATGGATGGTAATAGCAATACACATTGCGCATCTGAATTGATAGTGGCTTCTATTATGAATTCTCTTTAAATTAGAATAAGCTATGGCGGAATATAATTATATTAATAATCTATAGTGGCAAACTGATTTATAACTTCTACTAATAACAGTTTCATAATGTTTCATTTAAAATTAGTAAAAATTGATATTAGGCAACAACACACGTGTTTTGTAACAACTTCGTATATGTTAATAGTTTGTGCAACTGAAATTTTTCATATACATATTTCAACTATGGTTTTGTATAACATGTGTTGTATTTCAAATTACAGGGAACCAAAATACAAGGTCATATATATAAGCATGACTAACACCTCCATGAGGGTCATGTCTATACCATATCCCAATTTGTTGTTGCATTGAATATTGGCAAGTATCGTGCCACTAGACAATAAGTACCGTGCACTGAATATATATTTTTTAATTTATGTATTTTTGTTCGAATATTTTCCTTTATTCATGTATGTTTGATCATTTTACTGGCTTACTAATGTAACAGTAAAATTTTGTAACTTCCTATACTGTTTATACACTATACTACTGATCTATTACTATTTCTATCTTAATATTTACACACTACTTTTTATGTAACATTTTACTTTGTGTACCTTTTTTGTTGCCAATTTATTTTATGGGTAACACACTATTAAGTCTCCGGTATTTAACAACAGATTGAATTTAACACATTTTCTTTATAGAGCAAAACTTTTTAGCCTCTGAGTTATTGGGAAGTGTGCTAATTTAGTCCATACGATATATATATTTAGTCCCTGTACATTGTAAAAAAAGTGTTTAATTGGAACAATAATATAACTGGTATGTTCTAAATTGATAATTTGTAAATGTCAAGGACTACAACGAACGCAATAGAAATTTTATAAACTAAATTGTGTATTACCAAATTTTTTAATGTAGAGTTCCAAATAATTAAATAATTTTTAATAATTTGAATGTCCTAACTAAAGACATCTCCTTCGTTTTTGTTATTTTTTTCGTAACTTAATAAATTGAGAGAACACGTTTTATAACATCCGATAGTGATTATACAGTATGTCAAGTAATACACTAAAATATACAACTGACTATTTTTTTAGTCCAAAAAAAAACACTTTAAGTTAAAAGAAAATGTATACCCTGCTGCACTGGTCATACAAACTAGTTATATCTATATCGTAGATTATAGATTCATTTGAATCGACCGCGCACCTAACATCGCACGCACAAATAGAGTAAAAACTGCAAAAAAATAATTCAAGATAGAGCAAATAATTCAAAATGGAGCCGTTGATGTGGTAATCGGAGGGCGCATAATTATCCTATTTGAATCAACGGTGGAAATCGATTCGTGTCTCTCAAGGGTGCGTCGTAAGCGAAGGGATACCGAAGAAACAAAAATTTTAACATTGGGGCGTCTCTGCTTTTTCCCACACTCTGCTAGGGTTTCAGAGTCGCCGCGCTTCTCCGAGTTCAACTCGCTACTCACTCTTCCCTCCATCGCCGATTCCATTCGTTAACTCACGGTGAGTCCTCTCTTCATTGATTTTCTCTACTATTAATCTCTAATCATAAGTTTTGCTTTACCCTTTTTTGTTTCGTTATTGCTTCCGTCGCTGATCCGAAGCAGTTATCACTTATCAAGGGTTCGTATTTTATGTTTCTTCAACTAATTTCGGTTTTTTATTTCTGATCAGAATCAATTCAGTTCTTAAACATTTTTTTTTGTTTTTCTTCGATATGGTTCTTATTTTAATTGATTTTGTTCAAATCCAGTGTTTAGAATTATCTCTGCTTAGTATTTGTTTGAGTGAATGTGGAAAATGGATGCCAATCTAAACCCCTTAGATTTTCGATCTGCTTTGCTCCCCTTATACCACGAAGCAGAAAACACGCTGCCACCGCCTTGACTACGACGATCGACACATAGGATGCACGCCGTCCTCCCCTTCCATGCGTGTTCTCTCTCACTGAATTCGGCTTTCCTCTCTACAGTTCGCTATCTCCGATCCATTCCTCGGTTCTACCGTTGCGGCGGCCTCTTTGACATCGATTCTCCATTCGGTACCCTCTCCCTCTCATTCCATATTCTATGATATATCGATTGATTGAAATCTACTATCTAATTATCTGTTCCTAATTACTTGTTTATTACTCTGCACTGGTTTCGATGTTTAACTCTTATTTCAATTTCTTTGTTATTTGATTTCTGAATTCTGAGTTAAGTTAGTTCCCTTTTATTAGGTGAACCGGAATTTTTGACTGAATAGCTGTTGTCCGCACCTTACCTCTGCTGCTTCTTCTTCTTCCTTCTATTTCAAGTTTACATAATTCGAATATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04408.26	HA2	973	1059	7.00E-23
PF07717.19	OB_NTP_bind	1118	1195	2.30E-15
PF00271.34	Helicase_C	781	910	1.10E-12
PF00270.32	DEAD	581	735	9.20E-08
PF09848.12	DUF2075	593	699	5.40E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0140098	catalytic activity, acting on RNA	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0016887	ATP hydrolysis activity	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR007502	Helicase-associated domain
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011709	DEAD-box helicase, OB fold
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
A0A8B8K891	_

SwissProt

SwissProt term	Description
PRP16_ARATH	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

KEGG

KO	Description	Enzyme
K12815	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16	[EC: 5.6.2.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G13010	RNA helicase family protein
Medicago sativa L.	MsG0380014290.01.T01	_
Oryza sativa L.	LOC_Os03g17432.1	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
Cucumis sativus L.	Csa019307	_
Glycyrrhiza uralensis Fisch.	Glyur000004s00000415.1	_
Codonopsis lanceolata	Cl_chr01_55500T	_
Arachis hypogaea L.	AH18G03390.2	Uncharacterized protein like

Expression pattern