Gene detail

Detail information of Am09G006550.1 Annotation

Gene ID	Annotation
Am09G006550.1	ATPase, V0/A0 complex, subunit C/D

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G006550.1	mRNA	Chr09	28510751	28515473	-

Sequences

CDS:

>Am09G006550.1
ATGTACGGATTCGAAGCTCTCACCTTCAACATCCACGGCGGTTACCTTGAAGCCATCGTTAGGGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAACAATCTCTGTCAATGTGAAACCCTTGATGACATCAAGATGCACCTTTCCGCTACCGAGTATGGACCTTACCTCCAAAACGAACCTTCTCCATTGCATACCACCACAATTGTGGAGAAATGTACTCTTAAGTTGGTTGATGATTACAAGCACATGCTATGCCAAGCCACAGAACCCTTGTCAACCTTTTTAGAATATATCACATACGGTCACATGATAGACAATGTTGTTTTGATCGTTACCGGTACTTTGCATGAGAGAGATGTTCAAGAATTACTTGAAAAATGCCATCCACTGGGCATGTTTGACAGTATTGCTACTCTGGCAGTTGCTCAAAATATGCGAGAGCTTTACAGGCTGGTTCTTGTCGACACTCCTCTGGCTCCGTACTTCTCCGAGTGCATTACATCGGAGGACTTGGATGATATGAACATTGAAATAATGAGGAACACTCTTTACAAGGCATATCTTGAAGACTTCTACAGATTTTGTCAGAAACTTGGTGGTGCCACTGCTGAAATAATGTCTGACCTTCTAGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTAGCATAAATAGCATTGGTACTGAGCTTACCAGAGATGACCGTAGAAAATTGTACTCTAACTTTGGTTTGCTCTACCCATATGGTCATGAGGAACTTGCTGTCTGTGAGGACATTGATCAGGTTCGTGGTGTTATGGAAAAATACCCACCCTATCAATCTATTTTTGCCAAGTTATCGTATGGAGAGAGCCAGATGCTTGACAAGGCATTCTATGAGGAGGAGGTCAAGAGGCTTTGCTTGGCATTTGAGCAACAATTTCACTATGCTGTGTTCTTCGCTTATATGAGGTTAAGGGAGCAGGAGATCAGGAATCTAATGTGGATTTCAGAATGTGTGGCTCAAAATCAGAAGTCCAGAGTTCATGACAGTGTTGTCTTCATATTTTAA

Protein:

Promoter(3k):

>AM09G006550.1
AGTCGGATTAGTCAGCTTTTTAGGACTACAAATGAACCGTTACGGATCATGTCCTAAAATCCCTATTTAAAACAAATAATTTCTAAATTAAAATAAATACAAACATACTTCTTTCCCCGAACCAAATTCTCAAAATAGGGGACTAAGTCGGCCGCATGGCCGGGTTAGTCATCATCTTAGGATGAACGGGGCCGTACGGCTCAAGAGTCCTAAAATACCTATTTAAATAAAATCAAATCACTCCATACACAAATAATTTTCTTCCAAAAAATCAAAATCTTATTTTCACAAACAGGAGATTAAATCGGCCGTACGGCCGGGTTAATCATCGTTTTAGGACGAATGAACCGTTACGGATCAGGGGTCCTAAAATCCCTAAATAAAAACAATCTTTTTTTTAACCCTAGAACTACGTAGCATTTGATTCTCTACCAGGAGATACGTAGGAGCAGGGTCACGCCCCTGTCAAGCGCAAAAATAAACAATTTCCATTACCTTTCTTTCTTAATTCATTTTTTACAGAAACCTATAAAAACAAAGATGAATATTTCATTTTCAAAATATAAATAGGGGATTAAGTCGACTGTACAGTCGGGTTAGTCTGCTTTTTAGGCCACTAATGAACCGTTACGGATCAGGTCCTAAAATCCCTATTTAAAATAAATAATTTCTAAATTAAAAAAATACAAACACATCTCTTTCGTTTCAAAAATCAAAAAATCTCATTTTCAAAGTAGGGGATTAAGTCGGTCGTACGGCCGGGTTAGTCATCGTTTTAGGATAAGTGAACTGTGGTCCTTCAGAGCCCCAGCGCTCCTTCAGCCCTCAGCGGCCCTTCAGAGCCCCAGCGCTCCTTCAGACCCCCAGTGGTCCTTCAACACAGATCACACAATCCTAAAACCCCTATATTAAAAAAAACACCAACCAACAAACATTTTCTACCAAGAACTGCGTAGCTTTGATTTCTCCATCGCACCTGGAGATACGTAGGAGCAGGGGCCCACTCCTGTCAAGCACAAAAAACTAAAATTTTCATTAAGTCTTTTTCTTTCAATAAAAGGGTAAAACTTAACATTTTCAAAATTAATATTCTTTCTTACAACTAGTTAGCAGGTAACCTTCATTAGGAAGGATGTCGTGGGGTGCTAATACCTTCCCCACGCATAACCGACTCCCGAACCCTTATCTGGTCTCAAGGACCCTTATCCATTCCAAAAGGGATTTTCCAATGTTTGCCCTTATATACTAAACTTTGGTGGCGGCTTCATTTTTGAACCTTCGAGGAATCCTCACCCGGATTTTTCGGTCGCTACAGTACTTCTTCCTATCCCGTTTAAGAGCGTGGGTGACACCCCAATAGGGTCTCTGTTTGATATCAGATAGACACGAGTCTATCAAAAGTGCTGTTAGGCGTATAGACAGCAGTTGGAAGCACATGTTTTGTATTCGCCACATAGCACAGAACTTCATGAGACACTTCAAGAACACTTCTGTCAGGAAAGCTATGGTCAATATGAGTGAGTATTATTTTTTATAAAAACACCCTAATATTTTTTTCATTACTTATTACATCCTTACCAATATTATGTTTTCGTGCTTCAGCATACTCAATGACACAAAAATCTGTCAATCACTACAAAGTCAAGATTGGTGATGAAGTGGGTCCTGATGGGGTGGCTTGGGTTGAGGACATAGACCCCGGACAATGGATGCAGTGGTGCGATGGAGGTTACCATTGGGGGCACATGACAACAAACCTTGCCGAGTGCATCAATAAAGTGTTCAAGGGACTGCAGAATCTCCCTATACATTCTTTGATAGCGGCCTCATATTTTAGGCTGAACGAGACTTTTGTCAAAAGGGGAACCCAGGCACAGGCAATGTTGGAGTCAGGAACTATGTACTCTGAAAAATTGATGAAAAAATAGATCACAATCGAGCTGTCTCGAACACGCACAACGTGGCAATTCACGATCGTGCCCAAAAATTGTTCAGAGTGGAAGAAATTATACGACCACAAAGTGGGAGACCTGCGGGCACATTCGTGGTTAACATCAAAGACAGTACGTGTGAGTGTGGGGAATTTCAGGCACTGCACTATCCTTGTTCCCACGTGATCGCGACATGTTCAAAAGTTAATTACGATCACATGGAATTCGTGCAGCCACAGAACAGAATGCAGTATGTTTTCAATACATACTTTGAGGAGTTCCCACCATTGTCATTTGAGTTGTCATGGCCCAGAACTGCAGCATGATCCAACTAAATGGAGAGATAAAAAGGGTCATCCACAGTCTACCCATATTCGGACGGAGATGGATCAAAGAAAAAGGGGTACTCGCACCAAGAGATGCAGTATTTGTAGAAATGAGGGTCACAACAGAAACAACTGCCCAAACCGCAATCTAGACTAGTCACATTTTAAACCTTTGTAATCTCGTACTAATTAAATAAATACAGTTGTTTCCATATTTCTATATAGCGTAAATTATTTTTTTACCATTAATTATCTAATTATTTTAGAAATAACAAAATTAATTTTAAAATTTAATTAGGTTTATATATATTAATATAAAAGAAATTGAAAAATAAAAAAACACAATTCAGAAGTCTCTCCCACAGGGAAAAAAATTGCAAAATTGCAGTGTAGAAGTTGCTACCACAGGGGGCGACTTCTAGCCTGAAAAAAAAGTGTTCTACTTTGGTAATTAATCTAAAAGGTGTTCATTTTGGTAAAATTTTTTTTGGTCAAAATTTACCTAAGAAAAATCCATTATTTACGATATAATTTTAAAATTTTATAATAAGCAAAAAATAAAATAAAACACGAAATAAATTTTTCATTAATTTTTCTTCATTATTGTGCTCAAGAAGCAGACACTTCTCCTTCTCCTCCTCCTCTCGGTGCAGATTTCCCTGAAGGAGGTGCTTCTCTCCCTCTTCTCTCTCTACATCTGCATCAATTATCCCTAACCCGTCCCGATTCAGATCCGATTCAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01992.19	vATP-synt_AC39	16	344	4.10E-112

Gene family

Gene family	Subfamily
Transporter family	F-ATPase

Gene Ontology

GO term	Description	Category
GO:0007035	vacuolar acidification	Biological Process
GO:0046961	proton-transporting ATPase activity, rotational mechanism	Molecular Function
GO:0016471	vacuolar proton-transporting V-type ATPase complex	Cellular Component
GO:0007034	vacuolar transport	Biological Process
GO:1902600	proton transmembrane transport	Biological Process

InterPro

InterPro term	Description
IPR035067	V-type ATPase subunit C/d
IPR036079	V-type ATP synthase subunit c/d subunit superfamily
IPR044911	V-type ATP synthase c/d subunit, domain 3 superfamily
IPR016727	ATPase, V0 complex, subunit d
IPR002843	ATPase, V0 complex, c/d subunit

trEMBL

trEMBL term	Description
A0A8B8L214	_

SwissProt

SwissProt term	Description
VA0D2_ARATH	V-type proton ATPase subunit d2

KEGG

KO	Description	Enzyme
K02146	V-type H+-transporting ATPase subunit d

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G28715	ATPase, V0/A0 complex, subunit C/D
Medicago sativa L.	MsG0780036184.01.T01	_
Oryza sativa L.	LOC_Os01g40470.1	vacuolar ATP synthase subunit d, putative, expressed
Cucumis sativus L.	Csa017396	_
Glycyrrhiza uralensis Fisch.	Glyur000109s00010625.2	_
Codonopsis lanceolata	Cl_chr03_40600T	_
Arachis hypogaea L.	AH14G36180.1	V-type proton ATPase subunit d2 like

Expression pattern