| Gene ID | Annotation |
|---|---|
| Am09G006530.1 | Pectate lyase family protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am09G006530.1 | mRNA | Chr09 | 28439542 | 28441638 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00544.22 | Pectate_lyase_4 | 185 | 367 | 5.10E-21 |
| PF04431.16 | Pec_lyase_N | 27 | 83 | 3.20E-16 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL1 |
| GO term | Description | Category |
|---|---|---|
| GO:0030570 | pectate lyase activity | Molecular Function |
| GO:0045490 | pectin catabolic process | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| GO:0046872 | metal ion binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011050 | Pectin lyase fold/virulence factor |
| IPR012334 | Pectin lyase fold |
| IPR045032 | Pectin lyase family |
| IPR007524 | Pectate lyase, N-terminal |
| IPR002022 | Pectate lyase |
| IPR018082 | AmbAllergen |
| trEMBL term | Description |
|---|---|
| A0A1S2XGV2 | _ |
| SwissProt term | Description |
|---|---|
| PLY_LILLO | Pectate lyase |
| KO | Description | Enzyme |
|---|---|---|
| K01728 | pectate lyase | [EC: 4.2.2.2] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G15110 | Pectate lyase family protein |
| Medicago sativa L. | MsG0780036179.01.T01 | _ |
| Oryza sativa L. | LOC_Os02g12300.1 | pectate lyase precursor, putative, expressed |
| Cucumis sativus L. | Csa017439 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000109s00010628.1 | _ |
| Codonopsis lanceolata | Cl_chr02_18020T | _ |
| Arachis hypogaea L. | AH14G34400.1 | Probable pectate lyase 3 like |