Gene detail

Detail information of Am09G006180.1 Annotation

Gene ID	Annotation
Am09G006180.1	Integrase-type DNA-binding superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G006180.1	mRNA	Chr09	27742016	27746574	+

Sequences

CDS:

>Am09G006180.1
ATGTATAGGTATCATATGGCATCTATGAACTTGTTAGGTTTCTCTCTCTCACCTCAAGAACATCCTTCAACTCAAGATCATCACTCTCAAACTGCTGCTTCTCGTTTTGGCTTCAACCCTGATAATGGAATCTCAGGAACTGATGTACCTTCTGAATGCTTTGATCTCACTTCTGATCACTCATCTGCTCATTCACTCAACCTTCCTCCTTTTGGCTTTTATGAAGCTTTCCAAAGAAATACTACCAACAACATTCACACTACTCAAGATTGGAAGGAGAACTATAGCAACCAAAACCTGCTGTTGGGAAGTTCATGCATTAATCAAAATGTGAACAACCAACAACAACAACAACATCAACCAAAGCTAGAAAACTTCCTTGGTGGAAACTCTTTTGGTGATCATCATGACCACTCAACATATTGTTCATTGCAACTTCCTTCTCAGCCGGAAGCAGCCGGTGGCGGCGGTGGTGGTGGTGGAGGTGGAGGTGATGGTAATACAAACAACACTAACTCTATTGGTTTATCAATGATAAAGACATGGCTTAGGAATCAACCACTTCACACAGAAACCAATAACAATGAAAGTGGTGCACGTGTGCAACAGACTTTATCACTTTCAATGAGTACTGGTTCACAGTCAAGTTCATCACTGCCACTTATCACTGTAAATGTGAGTGGTGAGAGTTCTTCATCGGAAAACAAACAACCACCAACCACGGCAGTAGTACTTGATAGCAACCAAACTGTAGCCGCCGTTGATAGTACTGTACCTAGAAAGTCCATTGACACATTTGGACAAAGGACTTCCATATACCGTGGTGTAACAAGGCATAGGTGGACGGGAAGATATGAGGCTCATTTGTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGGCAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCTGCACTAAAATACTGGGGAACAACCACCACAACAAATTTTCCTATTACCACTTATGAGAAAGAGGTAGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGTGTAACCAGACATCATCAGCACGGTAGATGGCAAGCGAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAAGCATACGATGTAGCAGCAATAAAATTCAGAGGACTGAGTGCAGTTACAAATTTTGACATGAGCAGATACGATGTCAAAAACATACTTGACAGCAGCACATTACCAATTGGTGGTGCTGCCAAGCGTTTAAAAGACATGGAACAAGTTGAATTGAGTGTGGATGGCCATAGAACAGAAGAAGATAGCATGAGCATCACTTCTCATCTAACTGAAGGCATCAATAGCTATGGATCTGCAGGATCAACAACACATCATCATCCAGCAGCAGCAGCAGCATGGCATGGTCTCTCATTCCAACAACAACCATTTAATGCTACCAACATGCATAACTTAAATTACCCTTATGGTCAAAGACTTTGGTGCAAACAAGAACAAGATTCTTCTGATCATACTTTTTCATCAGATATTCATCAACTACAATTAGGTAATAGTACTCATAATTTCTTTCAACCAAATTCTGGATTGCATACTATCATGGGAATGGATTCTTCTTCTTTGGATAATAGTTCTGGATCTAACTCAGTTGTTTATGGTGGAGATGGTATTGGTTATAATGGTTATGGAGGAGGAAGTGGAAGCTATATGATTCCCATGGGAACCACTACTACCAATGATGGTAACCAAAATCAAAGAGGTTTTGGTGATACTGAAATGAAGAACTATGGTTATGAAAGTGTTTTTGGTTCTACTGATCCTTATAATGCACATGCCAGGAACATGTATTATCAACAATCATCTGTTGATCAAGGCTCTTCATGCAATAATAATAACAATTGGATTCCAACTGCAATTCCAACACTTGCACCAAGGCCTAACAACATGGCACTTTGTCCACCTTTTACATTATTGCATGAGTAG

Protein:

Promoter(3k):

>AM09G006180.1
GCTAACACAATTGCTTGTAGGCCAAAGCGTTGCTCATTCCCTTAGCGCTTTTTAGGAATAGGTAGCGCTTTGGCCTACAAGCGCTACCCACTGTATATTTTTTTTTTAAAATTTTTTTTCTATTTTTCTTTATTTTCCTTTTTACATTTTCAATTTTCCTGGTCATATACAGCCAATCCAATACAATCCAATCCATTATGTATACTTAACAACATATATATAAACTAGCTAACAACAAGTTAAAAAATAAATTTAACACAATTACTAACAAAATAAATCCAATCCAAAAATTACATTATACTAAGATACATTATACAAAAATTACAAAAAGAGGGGGCGCTCCCCAGCTTCCTGTTGAGCAGAGAATATACCAGTGTAAGAAAAGAAATTGCTATAGCACACCAGCATTTTTGCACTTCCAAAATCACATAGCTTACTTTGGTCTGACCTTTGTGCAGCCTCACATAGACATGGGATGAAGACATTTTATCAACATGGAACCTACGAAAGACATATTTTATCATTAAACAACAACAATCCAGCAAGAGCAAATAGAACAAATATGTAAGCACCATTAATTTACGAAACATTAAAAGAAAAAATCAATACTGAAACCCATACCAGTTGGGAATCCTATGAAAATGAAGAAGATGCAAAGCCAAATTAATAAAATAATATCTAAAGAACAACAAAAAAGGTGAAGGATTCCAACTCACCTTCTTACGGGGGAGAAATAGATAGAGGTGGGGAGAACGAACGACGACGCTGCAACAACAAACCAACACGGTGAGCTTGAGCTTGAGCAGAGAGCGAAAAAGAGAAAGAAAGGGTTTCTGAGAAATCTGAACGTGAGAGAGAAAGAAATGAATGCGAGGGAATTGAAATAAAGTACTAGTATTAGGCAGCGTTCTCCCAAAAAAAGCGCTGCTCATCGCCCCATCCTCGTTCTCCTATAGGCAGCGTTTCCTAAAAAGCGCTGCTCATTGCCCCAACGCAGTCTCCTATAGGCAGTGTTTCCTAAAAAGAGCGGCACATCGCCCCAACGTGTTCTCCTATAGGCAGCGCTTACAACAGTAGTGCTGCCCATTCCCAGCGCATTTTAACCAAATGTAGCGCTGCCCAATAGGGCGCCCTTTTCTCAAGATCTGGCGTAGTGGTTAAAGGACAAAAATCGTCAAACTAAAGAAATTGAGAATCAAAAATACAAATTAAACCTAAAAACAATTGTCAAGAAATCATAATCAATCAAATGTGTGTAATTTTATAAATAATTATGCTAAAAGTCAAATAATTTGAGTGATTTAATTATAGTTATGATTGGATGGCAATATTAAAAATTTGTTTAGATACTACATATATAAGAGTATGAATTAAATCCAAACAACTATTAGTAGTACGTACTCCTACTAGCAGGATTTGGATAATGATAAAAAAAATACTAGCAGGATTTGGATTTAATGTAGTTGGGTATTTGTGCAATCATGCAGTCGGTAATTTAGAAGTGGTTCAATTAAAATTGGATAGTTCAGATTTTTAAAGCAATTTTGATTTATGTTTAATAAAAAATTCCGATTTTAAAATCTGGATTGTGTGATTAGGATGAGACTATCTTGAACTACTGAGTGTCCAACTGCATGCAGTGTATCCCATACTAGCACCGTAGTATATCCCTATACTAGTAGGTCTTGAACATGAAGAATAATTAAAAACAAAAAAAGGTTGTCTGTGGTGCACATGAATTATTGTTTGTGGGCTTGTGCATGGAAGAGAGAGAAAAGTGAGCTGGGAGAGTATCTTAGTGAGGAAAAGCACGAAAAGAGAGACACGCACTCCCGTTTGTAGCGGGGGAGCAGATATATTGATGATTAGGACGGACGAGGAGATGATGATAACAATACTGATACAGTGTGATATGGGATATGGACCTGAGAGGAAAGTTATGGGTGTTTTGTTTCTTCTTCGTAGCAAAGCAAAGGAAATGAAAAATTTGAAAAGCAAATTACTCCATATATATAATTCTGACTTGACTTCTGATGAGTCTGACATATATATACAATGTCCAAATGGGTATGAATAAATGGGTGTGGCAAGGGGCTGCCTGCGTGTGGTTTTTTGTCAGAGATTATTAGTCTTTCATCTTTCTTTCACTCACTCCAGGTGTTTACAGCCAGGAAAGAGAGAGAAACATGGCTTGCATGTATCAACTTTGTTGTTGAATCATTCTTCAATGTGGTGGTAATTATCAAAAAGCTAATTAAGTGAACCAATTCAAGTTTGAATTTTCAAGTCCATAGATTGACATATATATATATATATAATAATTGGCGCTTCCTACATTTTTTCTTAACTACACAAATCACAATCATATTTAAACTTAGTTAGTGCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTAAGTTTTTCATCATTAATTCAATTTACAGTGGCTTGTGTAATTTCCAAGATTAATATGATCTCTCTCGTTTATTTCCTTCCTAAATCCTAATAACCCGCTCTTTTGAAATGGCATATTAGTACCTCCTCAAACCTAAAATATAAATACCAAAAATACATGCATGTATTTGGACTCATTCTGTCTCGATATATTTACTTTGGTACTTATTCTCTTCACTCCTTTGTTTAGTTAAATACAGTGATCAATGATTAAAAAAAGTTAATTAGTTATCTGTGAAAATACAAAGGTAACCTTAACTACAAAACCAATATAGTTTTACTATTTTTGAAAGTAATTAAATGGTATAAATGGAAATTGAGAAAAAAAGAGTAAGATCTCTCCATCATTTATTCCTATTGTACGTAGGAGAGAAAAAAAGCATGTAAACCTCATTATTTTTTAATCTCTCTCTAGTCTCTTCCTATTTCTAAACAAGATAAATTTATTTTCTCTCTTCTCTTGATCTCTACCCAATTTCTTCTATAACAAAAAGAAATGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00847.23	AP2	272	330	5.40E-22
PF00847.23	AP2	374	424	5.40E-22

Gene family

Gene family	Subfamily
Transcription Factors Family	AP2

Gene Ontology

GO term	Description	Category
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0006952	defense response	Biological Process

InterPro

InterPro term	Description
IPR016177	DNA-binding domain superfamily
IPR036955	AP2/ERF domain superfamily
IPR001471	AP2/ERF domain

trEMBL

trEMBL term	Description
A0A8B8L9V5	_

SwissProt

SwissProt term	Description
BBM2_BRANA	AP2-like ethylene-responsive transcription factor BBM2

KEGG

KO	Description	Enzyme
K09285	AP2-like factor, ANT lineage

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G17430	Integrase-type DNA-binding superfamily protein
Medicago sativa L.	MsG0780039855.01.T01	_
Oryza sativa L.	LOC_Os04g42570.1	AP2/EREBP transcription factor BABY BOOM, putative, expressed
Cucumis sativus L.	Csa006267	_
Glycyrrhiza uralensis Fisch.	Glyur000085s00008869.1	_
Codonopsis lanceolata	Cl_C05639_unscaffolded_00020T	_
Arachis hypogaea L.	AH14G32670.1	AP2-like ethylene-responsive transcription factor BBM2 like

Expression pattern