Gene detail

Detail information of Am09G006160.1 Annotation

Gene ID	Annotation
Am09G006160.1	chromatin assembly factor-1 (FASCIATA1) (FAS1)

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G006160.1	mRNA	Chr09	27682235	27687843	+

Sequences

CDS:

>Am09G006160.1
ATGGCGGACACAGTGATAATCGACTTAGAAAACACTCCTCCCCTTCCTCAATCTCAAGATCCAACAACCAATCTCCCAAAAACCACCACTCGCAAACGGAAGAAAAACGAAGCTACAACTCTATTGCAGAATATGCGAAACCCCGAAGAGAAACAGAAGCACATAGAAACCCTCGAAAATGAGCTTCAAGGTTTGTTTGGCTACTATAAGGTCGCCATGGGTCAGAAAGTGGTTATTGACCTGAAGCAGTGCGGTGGTTCAAGAAACGCTGTCGTTGCGGCTTTGATGGAGGAGAGTGATCTTCCGCTTTCGAAGCTCGTTGATGAGATTCACGATAAGCTGAATAGCGAGGTGGCGAACGGCGCAATTTTGTTGGCGGAAATTGTTACCTCTGCGTCGGTGAAGAGTAGCGTGTTGTTCGTTGGGCAGAGAATGATGTACGGTGTTCCCAATGTTGATGCTGATATACTTGAGGATCATTCTGATTCATGTCTTTGGTGTTGGGAGACCAGGGATGTTAAATTACTTCCAAAATCTGTTCGAGGAGAGCTTGTTGTTCGACGCACTTGCAGGAGAAAGATTCATGAGAGAATTACAGCTGTCTCTGAAATGATAGCTTCACTGACAAAGCTTGAAAGTGAACCAAATTACAATCAAGAATTAGTGAAGGCATCAAAGAAGCTCAGTAAAGCTTACACCGAGGCAGATATCCGCTTGTTAGTTGAGGGCTTGTTGCAGAAAAACAGTGAAAACATGGATAAGAAAAAAGCAAACCAAGAGCAAAAATTGCTTATTAAACAATTGGATAGAAATAGAAGAGAAGCTGAGAAAGAGAAGGAGAAAGAGAAAGGAAGCATGCAATGTGAATTGCAAACCGAAACAATTCCCAATGAATCTGATTTGAAACTGTCGCAAAGTGGGGCAAAAAATGATGAGAAATGTGAACAGAGGAAACCCCAAAAGAAGCAGGTAGATGAAGCAGAAAAGGATCAGCGGCGCCGAGAAAAAGAAGAAGCTGAATTTAAAAAGAAACGCAGCTTACAAAAGCAAGTCTCAATCATGGAACGTTTTCTGAAGAAAAGTAAACCTAACCCCCCTGTTGAGAATGATAAAATTTCAACTGAGCCAACTGCTTCTGATGCACCAAGCAGCAAGATTGAAACTGTGTCTACTAAGTCGGCTACTCTTTCAATGGATAATGTTCTTGCATCAAATAGTGATGTTAGCCTTGAGGATCTTCGCAAGTCACACTTCTCTTCGTGGCGCTGTTTAGGACAATTAATACGCTCCAACAGAAGACAAAGATGGGGCTTACGACAGAAACCTAAGATTGAAGCTTTTAATGAACTTAAGTTGACTGCTACTAAAGCTGTAGATTATGAGGATGAGTTGGGCATGGAGAAGCATGTAGACCGACTGGGAGAAAGTAGTTCAGATATCAATTCATGCTCAATGAATGCTGATAGCTCTCATCTCAATCCCAAGAAGTACTATTGGGGAAGACAATTATTACAGTATGATAAGGCTCATAGACCAGCCTTCTATGGTTTTTGGCCCACTAAAAGTCATGTTGTTGGACCACGCCACCCTTTAAGTAAAGATCCAAGCCTTGATTATGATGTCAGCAGTGATGAGGAATGGGAAGAGGAGGATCCTGGTGAAAGTCTATCAGATTGTGATAAAGATGATAAAGATGAGGAGGAATGCCAAGAGGAATGCTCAAAATCTGATGGAGAAAGTGAAGATGGATTCTTTGTACCAGATGGATATCTATCAGAGGATGAGGGTGCACAAATGGACAAAATGGAAACAGATGTTATCACCGAGGGGGCTGATAGCTCACCTTGCTCTAAGAACGACATAGAGACTGAGGAGTTTTGTGCTTTACTTCGACAGCAGAAATATCTAAACAATCTGACAGAGCATGCTCTTCGCAAAAACCACCCCTTGATGATATCAAATTTTGGTATTGACAATGAGTTTTTGTTATCACATCACGATGTTGGGGGTACTCCTAAGCAGGAGCAGATGTGCTTGCAAGCCTTGTGTATGTACATGATTCCTGGTAGCTCATATATAGAATTATCAACTGATAAAGCACACGATGAGGACCAAGAAGCCTGCCTATCTACTGGCAAAGGTGGTGCTACTCCAGTGTCTGGTTTGGCTGCCATACCAGACTCAGATCTTCCTATAATTGTGACCACTATTCAGAGTTATTCTCAGGGCATTAATAAAGTGTTAGGGTCTTTGCAGCAGAAATTCCCATGTGCATCAAAGTCCTTACTGAAGAATAAAGTGCGAGAAGTATCTGACTATGTTGATAACCATTGGCAGGTGAAGAAAGAAGTTTTGATTAAGCTTGGCTTGCCAGTTAACCCAGAGAAAAGCAGTGGGGGACCAAGGAGTATTGCTGCATTTTTTTCTAAAAGGTGCTTGCCTCCTACAGATGCAAGTGTGAAACCTGGTGAAACTTCACCGTTGCCAGCCATGAAATCATCATATACTGCCACTCATGAACGACAAGACAGCACTTCATATGATGTCTAG

Protein:

Promoter(3k):

>AM09G006160.1
TGACTAACATGTAAGCCACCGTGTATGCAATTAGAATCAAAAATCATCGACAAGGGTTGGCTCGAGTGGTGGACTCGGATTCCACCCCAAGGTCTCGGTTCGAATATTGGTATGGCAAAAACTCTGTTGGGAGGGGGGAACGTATCGGCAAACCCGGGTACTCGTGATCAGTCAGGTTCCTTGACGTAGATTAGTCATCGGCAAAGTCGGTAAAAACTATGCACGAAATAAGATGGTAAAAAAAATTAGAATGAAAAATCGGTTATAGAATATCATTGAATGAATTATTCAAAGCAAGCACTATAACGAATACAAAATAAATATATTAATGGTGACCTTTATATATCTTTTGTGTAAGGTGCCATGAAGATACCATAAACCATAAGAAAAAAACCGATGCAACATATTTATTATGATTATAATAATATTAATAATGATAATAATAATAAAGGTAATAATACTCAGCTTTATATAATTGTCAAAAAAATACTCAGCTTTATAAACGTATGTCATAACCAAAAAAACGTATGCCAATTATTTAAAGCAATACTATAAAGGAATAAAATTATTTTATGAAATTATGAATATAAATATGTTTGATTTAAAGCACTGTATGAATCATGACGGGACAATTCATCAATAACCATAAATTTAATCATTTAAAAAGAAATTACACATCTATTTTATTTTAGGGAGCAATTTTGGTCTTTTATATTTGTTCTAGATTTTATTTTGGTCATTTATTTTTTTGTCCCATTTTGGTCCCTCATCTTCCATTTCTATTTTATTTTGGTCCCTCAATGGTGTTTTCCGTCCAATAAGTTAAGTGTCATGACTGATGTGTATTCGTTAAATGACGTGGCATTTCATTTTTTTTAGAATCAAAAACATAAAACTATTTCCTTTTTAATTATTGGTTTCAATTTCTTGTTTGATTTGCATCAATTTTATTGAAATCTCTTGGTTGCATTTACTTACTGCGGTTATTTTGAGCATTTTTCAATTGGTTTGTTGCAAATTGGTTGAAATTTGAGTATTTTAGTCTCTCACAAAATCCAAACCCATTTTTTCGGCCAAAAACATGTTTTCAGATAAGTTGTGCTACTTTTTTGTGAAAATTGATGGTGGATTCATGATCCTTGTGAAATTTCGTTCAAGTTAGGCACAAAATTTGTTTGCTTCAGTGCTGTTTTGAGTATTTTATCATTGTTGATTTGAAGCTTTTGAAACTTTATCTTCAACATTGGTTTTCTAAAATAATTTTTTCTTATAAACGCTTTTTTGGTCCTAAAACTTGCATAATAAGATTCCTTATGAAATTTTGAGCGAAATGGACACCAATTTTTTGTAATTTGGTTCAGTATAACATGAGATAAACTTGTTACAAGAAATGATTGTGTTATTGGTGTTGTTCCAATTTGGTTCTCTGTGTGTTTTTTGGTTTCAATTTGGTCCCCTATGTATTCTTTTAATTTCAATTTGGTCTCTGTCAATCACTAGCAGTAAGAACGCCAGAAATTGAAGAACAACAATAAGAACCCCAAGAACAAAATGATTTTTGTAACAAGTTTATCTCGTGTTATATTGAACAAAATTACAAAAAATTGGTGTCCATTTCACTCAAAATTTCATAAAAAATCTGATTATACAAGTTTTAGGACAAAAAAAACACTTATAAAAAAAAGTGATTCTGAAAAACCAATGTTATGTGCACAAACATTATATATATTTAGTAGTTGTTCTTCTATTCAAAAAGAGGGGTATTATAGACAGTGGCGGATCTACATATACGTGAGGGTGTGCAGCTGCACACTCTCAAATTTAAAAATTTGCACCAATACCCCTATGAAAAATATATTTTGACACTCTTAGTTTTATTTTTTGCACATCCTACTACTATTTTTCTCTTTCCATTCCTAGCTGCTCTTTCCTATTGCAGCTTCAGGAGCAGTTGGTAGTGTAACTATGAGGTAGTTTTGGTTATCAAAAAACAATATATGTATTTAGATAATTAGGTATATTTTAAATTCAGCTACCCCGATAATATGTTATTTAGCTACTCCAACTAACTTTATTTGTCTAATGAGATAAAAGAATAATAACAAGTCCATTAGTCTAATTAGTCTCATTTGATCAAAAAAAGTCTATTATTATCACAAATAAATATGGTGATTTTTGTTAACTTGGTGATTATAGTCTTTTTATTTTACTTTGACAATTTTTGCCCCCAATTTTCCCCTCAAAATTATATATTATTTGCTCTTTTGGTCCTAAAAAATTTTGAATTTTGGAAAAATAAAGGAATAAAATTACACAATCCATGATTTTTAGCAACCAAAAGTGCAATGAAAAATCACAAAGACCAAAATTACCAAATTAGAAGAACAAAATATGTTTATTTGGTATACACCATCGCGGTAAAAACTTTTTAAGGTAGGTGAGATAAAGTCAAACATTTTTTATGATGTGTTGTTTCGTGATTGACTGCCGTTGTAAAAAAATTCTACACGACGATATATATTAATTGTTAAATTAAATCGTTTGACCACCCTGGACCAGGGTCCTAGATACGCCACTGATTATAGATAATTCATAATTGTGAGAGAACTAAGAAATTTACAAACAAAGACACATTTCAAAAGCCTTGTGCTTGAATTCATCGATCAAAAAAGAGAATATAAAATATATACCACATATTTTACTTTTTGATTTTATCTTTATCTTTTAACAGGGATACAAATGAATAAATTCACATAATGTTAATTTATTGATTTATTTATATTTATTTTGAATATTTATTTTGTTGTTATGGAATGCGAGAAGTTTTGACATTTGGAAGTGGAGGCAAGTTCGCACACGTTTGGCGCCAATCTCTAAATTTTCACTTTCCCTTTATCGATTTATATTCCTAGACATATTTTTCCTGTTTCCATTTCCCTCTCAACTCAAGCAATTAGGGTTCCCAATTCACAACACAGATCTCATATTCTTCCACTGTAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF12253.11	CAF1A	502	571	1.10E-19

Gene family

Gene family	Subfamily
Epigenetic Regulators	NFF2

Gene Ontology

GO term	Description	Category
GO:0048366	leaf development	Biological Process
GO:0045787	positive regulation of cell cycle	Biological Process
GO:0031507	heterochromatin formation	Biological Process
GO:0000724	double-strand break repair via homologous recombination	Biological Process
GO:0051301	cell division	Biological Process

InterPro

InterPro term	Description
IPR022043	Chromatin assembly factor 1 subunit A

trEMBL

trEMBL term	Description
A0A1S2XQC3	_

SwissProt

SwissProt term	Description
FAS1_ARATH	Chromatin assembly factor 1 subunit FAS1

KEGG

KO	Description	Enzyme
K10750	chromatin assembly factor 1 subunit A

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G65470	chromatin assembly factor-1 (FASCIATA1) (FAS1)
Medicago sativa L.	MsG0780039858.01.T01	_
Oryza sativa L.	LOC_Os01g67100.1	expressed protein
Cucumis sativus L.	Csa006251	_
Glycyrrhiza uralensis Fisch.	Glyur000085s00008866.1	_
Codonopsis lanceolata	Cl_chr07_19850T	_
Arachis hypogaea L.	AH04G27950.1	Chromatin assembly factor 1 subunit FAS1 like

Expression pattern