Gene detail

Detail information of Am09G005630.1 Annotation

Gene ID	Annotation
Am09G005630.1	Pentatricopeptide repeat (PPR-like) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G005630.1	mRNA	Chr09	26072101	26074575	-

Sequences

CDS:

>Am09G005630.1
ATGGGAGATGAGTCACAACGAAGACTATGGAGCGGCGCAGAGAGAAGATGTCTATACCTTCTTCAAGGGAAGAAGATGACAATCACCATCACCACTCTCCTTCAAATTCACGCCTTCATACTCCGTAACTCTCTCGACAACAACCTCAACCTCCTCACAAAGTTCATTACAACCTGCGCCTCCCTCGCCACTTCCTCCCCTAAAAACGACGCCGTGTCCATTGTCCAACACGCTCGTCGTTTCTTCGATCACAGCGCTCCCCACAAGCGCGATGAGTTTCTCTGCAACTCCATGATCAATACCCACTTCTCCATTCGTCAGTTCACCCAACCTTTCACTCTTTACAAAGACCTTTGCAGGGGAGCAAACACTTTCACGCCAAGTTCTTACACCTTCACTTCACTTGTAAAGGGTTGCGCTGCTTGTATGGCTGCTAGAGAAGGTTTAGAGGTTCATTGTGTTGTTTTGAAAAATGGGTTTTGCTTGGATTTGTATGTGGCAACTGCATTGGTTGATATGTATGTTAAGTTTGGAGTTTTGGGTAGTGCAAGGAAGGTGTTTGATGAAATGTCTGAAAGAAGTATGGTTTCGTGGACTGCTGTTATTGTTGGGTATGCTAGGTGTGGGGATATGAGTGAGGCAAGGAAGCTTTTTGATGTTATGCCTGATAGGGATGTTGCTGCTTTTAATGTGATGATTGATGGGTATGTGAAGTTGGGGTCTATGGGTTCGGCCAGGGATTTGTTTGATAGTATGAGGGATAAGAATGTGATTTCTTGGACTAGTATGATTCATGGTTATTGCCAGAATGGTGATGTTGAATCTGCTAGGTTGATGTTTGATTGTATGCCCGAGAAGAACTTGTTTACTTGGAATGCAATGGTTAAGGGTTATTGCCAAAATAGACGACCCCACGAGGCATTGAAGTTGTTTTGTGAAATGCAGGAAAGTGCGGTTGTGGAACCAAATGAAGTCACTGTTATGAGTGTTCTTCCTGCTGTTGCTGATTTGGGTGCTTTGGATTGGGGTGTTTGGATTCACAGATTCGCGCGAAGGAAGAAGCTTGATGGATCAGTTCATGTGTGTAATGCACTAGTTGATATGTATGCAAAATGTGGGGAAATTGCAAAAGCAAAATTGCTTTTTGAAGGGATGCCTGAAAAAGAAACAGCTTCCTGGAATGCTTTGATAAATGGTTATGCAGTCAATGGCCGTGCAAAAGAAGCGTTGGAGGTATTTTCGACGATGATACAAAAAGGGTTTGAACCGAATGAGACAACAATTACCAGTGTGTTATCTGCTTGCAACCATTGTGGTCTGGTCGAGGAAGGAAGAAGGTTATTCAAAGCAATGGATAAATTTGGGATTGAGCCTCAGATTGAGCATTATGGTTGTATGATTGACCTTCTAGGAAGGGCTGGATGCTTAGATGAGGCTGAAAATTTGATTAAGGCAATGCCTTATGATGCTAATGAGATAATATTGAGTTCTTTTCTATTTGCTTGTTGTTACTCCAAAGATGTTTCAAGGGCTGAAAGAGTGTTAAAAAAGGCGGTGAAAATGGAGAAGGAAGGTGCTGGAAACTATGTGATGTTGAGAAATCTGTATGCAAATGAACAACGATGGATGGATGTGGAGGATGTTAAACAAATGATGAAGAAACGAGTTTCAAATAAAGAGGTTGCTTGCAGTGTTATTGAAGTTGATGGTAGCTTTAAAGAGTTTGTGGCTGGTAATTACTTGCATTCAAATCTGGAGGTTATTCAGATAACCTTGGGGCAGTTATTGAAGCACATGAAAGTTGAAACAATCTATTGA

Protein:

Promoter(3k):

>AM09G005630.1
TGGAATTTAGATAGGATGCACGGATCGTGCTAGACAGGCGCACGGATCATGCTCAGTGAAATCAACTTGGAATTCAAAACGGCACAGGGCGCACGGTTCGTTCTTAGTGGGCGCACGGATCGTGCGCTATGAAACTCTTGAACTTCTGTTTTGCGAACGGTCCGCACGGGTCGTGCTTGTGGACGCACGGATCGTGCGCCTCCTTTTCTTTATTTTCCTTCCTTCTTGCGAACCAGGCGCACGGACCGTGCTAGGCCACGCACGGATCGTGCGTCTACTTCTGATTTTTCACTTTATATTGCTTGATTCTTCTCCTCATCCTATTGTCTCTTGATCCTTGCTGTTTAAACATCAAAATTCCTCGTTTGCTCCATAATTAACTCTGAGAATACAAACTAACAATAGGTAGTAAAATGGCTCTAGAATAGAATTAAAACAACAAATAAATTACTAAAAATAAATGCTAAGAACACACTAAATTAGGACTTATCACCCCCCATGCATATGATCCCACACCAGCTGCACTGACATTTGCAAGTAGCAGCAGCCACTTAGCCTCAGCCCTGTCGCCGGTCTTGACTGTGAAGATGGACCAGCTCAGGATCAGAAGGATAAAGGCCCTGACAGAACGCATGTCATTCTCTATGGACCCTCTACTAACAATCTCCTGCAGCCACTCAAAACGGTAATATGAGCCAGATGAATCTCGACACTCCAGCCCCGCCTCCTCTATAGTCACACCTAGATAAATATGTGCTAGGTGGATGGCCTGATCAGTGGTGACAGAAGTTGGTGGAGCTCTGTAGTAGTTCCCTGTAATGGGTAGATGCAGCAAACATGAGACATCATCCAAAGTAATCGTCATTTCACCAAATGGTAAGTGAAATGACGATGTCTCTGAGTGCCACCTCTCAAGAAAAGCAGACATCAGCTCATGGTCCACCTTTGTATGTCCGGTCGAGATGAGGAGGGCTAATCCGGAACCTGTGATAAAGGCTCACAACCGGTGGTTTTGGGAAAACCCAAGCGGTCTCTGAGCCAGCTTGTTACCATGGTTGGTAACCTTCAATTTACACTAATATGTCTGTATTATAAAAAAATAAGGCTATGTAAATAAATTAAACTAAGAAGGCTACGTAAATAAATTAAACTTACCGGGTCTCTCAGTATAACGGTACAAACATGAGATGCTAGCCCAGTGAATAGAGGAGGAAGCTCCTCATGCTGTTCCTGATGCCCCTGCTGAGGCTAATCCTCCTGGTACTGCTGCTACTGATAATACTGCTGTCTCCTCAGGCATAGAATGGTCCTCAGACATAGAATGCTCATCAAAAGGGTGCCCCTGCTGGCCCTCCTCATAGTGATAGTCTGGGGCCTCCTCCACCTGCTGATACTGCTGTTGTCGGCTGCGCCGGGTAGACGCATGTCCCGCAATCTTGTGGCGGGTGCGTGTATTGGGAGCAGATGGCGAGGCCTGAGCCGAGGACTCCTCTCGATACCTATTGGACACTGAAAAAAACAAATTTTTTAAACAAAAATAAAACACAAATCGGATCTAGCTATATCTGATGCGAAATCGGATCTTGCTATATCCGATGCGAAATCGAATATAGGTAGATACGATGGGGAAATTGGATATAGCTATATCTGACTTACTATTTCTGCTGACTCTGAGGAAGATCGGATGTATGTAGATCCGATGGTAAATCGGAAATAGCTCTCTGAATGGTAAATTCGATTCTCTCAAAACTTTCTGGTCAAACTGATGCAAGTGAAAAATGGTAAATGTTTTGTAAATTTGTAAAAATTTTAAGGGTATTTTCGTCTTTTCACAGAGTCTGTGGAGGTGGGGGGTATATAGTGATATGACGGGGTTATAAAAAAAAACCATCATAGATTCGTAAGTCACCCATGTATACTATGGGAAATGATGTCATACAAGTCTAAGAAGGCTTAGGTGAGCATGGGGAAGCCTCTAAGGGTCATGGGTTGGCCTGGTGCACGGTCACATATGTACTGATATATGCCATCTTGTAGTAATATAAGGTAGACTATTTTCAAAAAAGAATCTCTTTCGTCACAAATTCACAGACACATATAGCCAGAAGATATGAACCTTCTGACTAAGATTAGATAATGTGCCTTTCAACTTTGACTATAAGGTATAAGACTGTTTGTATGCCCGATATCAATCTAATGGTCCAAATTGTTGGCTATGTGTGACTGCCAAAAATTGCAAATGCAACAAATTCAGTTTCGTTTTGTTAATGCTTTACTTTGCATGAGAAACAAAAGTGAAATGAAGAAAATCAATCATCAATAGAGAAGCGAAAGAAAATAGAAAGTAGAGGACGCAAATTAGACATTAATTATGATGCACTATTCGTGTAGAGAAATTTAACCGTCAACGAACTACAAACCATTATATTCATGACTTTAGGGTAGTTGTGATTAAAGTTAAACAATTTAGTATTGTGTGAAGTTATAATTGGTTACAAGTGTAAAAAATGTCTACACCATAACTGTAACATTTTTTACACCATCAACCAATAAAAAATTATGTTACGGGTGACTTTTAAAGTACTTAACAAAAAGTCAAGCATTTTTTACCACGAATCCTTTCGTGATATATTGACGATGTAAAAAAATTTTGTACGACAAAAATGCATATAAATTAAAGGTGTTTCTAGGGTAAGAGAGTAAATCAAATCACTCATCGGTATACCACTAAAATTTACCCGATGATATCGTGTAAAACGTTATGAGTTGTTAAGATTGAATCAACAAGTATTAAATCTCAACCATTTATAAATTTTTATACTACATTATACGGTCATATTTAATGATTTACGAGTGAGAGATTTAATTTGCTCCGTCACCCTAAACCACCCATAAATTAAATCCATATATTTTTGCATTAAAATGAAATTTAGGACTCTTAAAAAGCAAAAAGAGCAGTAAAAAAAAAAGCAAAAAGAGAGCAGTTTGTGAAGGAAAAGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01535.23	PPR	196	225	9.40E-72
PF01535.23	PPR	228	257	9.40E-72
PF01535.23	PPR	258	287	9.40E-72
PF01535.23	PPR	289	317	9.40E-72
PF01535.23	PPR	392	421	9.40E-72
PF13041.9	PPR_2	225	257	3.90E-64
PF13041.9	PPR_2	255	288	3.90E-64
PF13041.9	PPR_2	286	333	3.90E-64
PF13041.9	PPR_2	390	435	3.90E-64
PF12854.10	PPR_1	256	283	2.50E-47
PF12854.10	PPR_1	287	315	2.50E-47
PF20431.1	E_motif	507	567	2.00E-13

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009451	RNA modification	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0004519	endonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046848	E motif

trEMBL

trEMBL term	Description
A0A8B8L5C7	_

SwissProt

SwissProt term	Description
PP201_ARATH	Pentatricopeptide repeat-containing protein At2g44880

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G44880	Pentatricopeptide repeat (PPR-like) superfamily protein
Medicago sativa L.	MsG0780035948.01.T01	_
Oryza sativa L.	LOC_Os12g38880.1	tetratricopeptide-like helical, putative, expressed
Cucumis sativus L.	Csa005595	_
Glycyrrhiza uralensis Fisch.	Glyur000109s00010650.1	_
Codonopsis lanceolata	Cl_chr07_01930T	_
Arachis hypogaea L.	AH14G33990.1	Pentatricopeptide repeat-containing protein At2g44880 like

Expression pattern