Gene detail

Detail information of Am09G005420.1 Annotation

Gene ID	Annotation
Am09G005420.1	zinc finger protein 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G005420.1	mRNA	Chr09	25581903	25587153	-

Sequences

CDS:

>Am09G005420.1
ATGGAATTTGATGCTGCCGCAATTCCCGTGTCTCGAGACTCTTTCCCTCAACCTCAAGATGCAATGTTGCAAATGAATTTGAGGTCAAGTGAGACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTATATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAATAGGAAACTGGCTATTGCTACTGCACGGATGAAAGGCGAGTTTCCAGAAAGGTTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACCGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGATAAGGCTGGGATTGCTGGAAGAGCTGCGTTGAATATTTTAGGCTATCCACTCCGCCCGAATGAGCCTGAATGTGCTTATTATATAAGAACTGGTCAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAGTAATATGGTGGTTCCAATGCAAAGTTCTTCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAACAGTCATATGCGGCAGGGATAACTAATTGGTCTAGTTCATCCTATATTCCTAGTCCACGGTGGCAAGGCACTTCAAGCTATGCACCCTTGATTCTGCCTCAAGGAATGGTTTCCGTACCTGGATGGAGTACATACAATGGTCAAATAGGATCAGACAGTTCACAGCAAACAATGGGAAATGATCAAACATATGGAACTTCTCGCCAAGGTGAATCGGAAAATGCAGGATCCTTAGGAGCATATTCTCAATTACGTTCTGGCTCCGTTCCTGTAGGATACTATGCTTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAGCCCGAATGCCAATTCTACATGAAGACCGGAGATTGCAAGTTCGGTGCTGTCTGTCGTTTTCACCATCCGTGTGAGAGGAAGATTCCTGCCCCTGACTGTGTTTTGAATCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTCTTCTATTCGCGTTACGGAATATGCAAATTCGGCCCGAGTTGCAAGTTTGATCATCCAATGGGAATCTTCACCTATAATCTATCTGCATCGCCTTTAACCGAATCCCCAGGACGGCGTCTGTTGGGTTCTTCATCAGGAACTGCTGCATTAAATTTATCAACAGAAGGACTTGTTGAGTCAAGCTCAGCAAACCCTAGGAGGCTTTCGTTATCGGAGACTATACAGATTCCTTCTGATGATGATGACATTGATGATGAGGGATAA

Protein:

Promoter(3k):

>AM09G005420.1
CGTGAAACTTTAAGGCGATCGTTCGACCGATCCCAAATCCTTCCCTCCAACCTCGGAACTCACTTTTACTAAGCAATCAGTGTGAGGAAAATCATAGCCGATCCATATGTATTAAAGGCTTAAATATGTTTTAGGCACCTGCAAATATAGGGTGTTTTGGTTTAAGCCCCTGCAAAAAATTTTTTTTGTTAAAAGCCCTTGCAAAATGACATATTTTGTTATAAGCCCTTCTATGACTAAAATGTTAGCCTTAACATGGAATGCTAAGATTGCTGGATATGTTGAGAAGGGCTTATAACAAAATTTTTCATTTTGCAAGGGCTTTTAACAAAAAATTTTTTTTGCAGGGGCTTAAATCAAAACACCCTATATTTGCAGGGGCCTAAAACATATTTAAGCCTATATTAAATGGTTGAACATTTACAAAGTCGGATTACATCACGCCCGTAGGCTCATTCAGAGACCTAGGTGAAACGTGACCTTCCTGCGTTAATCCCTTCTTCATGATCGATATACTTCTGAAATCACTGGAGGAACTCGGCAAGAGACTCAACTTGGTTGACCCCGACGTCTATCTGAAATAGACTTCATTCACGAAGACCAGCCTCCATGAAGTAAAGACGGAAGGAGTCGTTGAGGTTCCGGACTTGAGCAGCTTCTCTATCGAATCTCTCTATGTAGTCCCGAAGGAACTCATTTTCTCCTTACCGAATTGCCTGCAATACCTTCCGAGATTTAAGCTTCATCTTCGAGTGGGTGAAGTGTGCAGAAAAGAGCTTGGCTAACTGATCCCAAGAGGAGATCGTATTTGACCTAAGAGCCCTGAATCAGTCTAGAGCCGCCTTCTCTAGAGTGAGGGGAAAGGTTCAGCACTTTATCTCCTCTGGAACGTTACGATATTGCATAACCGTGTCAAAGTAGTCGAGGTGGCGATCCGGATCGCCAGTCCCATCATGCATTTTCAAACCCGTAGGCGGCTTCTCGAGGTGCCTTGGCACCGGGAAGTAGTCGATCTTAGCTGTGAAATGTCCTTTACGCTTTGCCGACTTCTCAAGGGGTGGAGACCGTCGGTAGCCGTACTTGTCGGGGGATCCCCGTGAGCTAGGGCGCTGACATTCCTGCCTCGAAGACCTTTTCCGACTTCTGGTACGTCGCCTCGGAGAAGAGGAAAACAGAAACGAGCTAGGCCGAGGGGAACCCTCAGGACCATAGGAATCATCAGGGGTCCGACTTGGGGGAGTCTCCGATCCCCGCGCTCCCCTACAACGAGGTGGAGTGCGGTGATGGTATCTCCTCCAAGCCGGAGATCGGCGGTGGCCGCGGCCATGAGTCATTCCACTTGAAGAGTTGCACCGAGAGGAATTCCGATCCAGGATGTTACGAGCCCGGATCTCAACGATCTGAGCTTCTAACTGGTGCAGCGTTGGCTTTCCTGCCGGTCGGCCTCGGCTTGCCGATTTAGGAATAGGACGAGCTGTTGAACAGCATCGACCGGTACCTGGACGGTCGGAGGGGGGGATGGAAGTCGGTTCCGGGCTGAGATCCCAGGAACCATAGCCGTAGCCGAGCTTTGAGCATGCGTCGCGCTAATGGGTAAGGTGACTGCCACTCCTTCCGGAGTCACCCGCTGCAGAACCGGTCCTTCAGCAACATTCGGGATCCTACGACGTAAGGTCGGAGTCATTGTCAATCAAGGAGATGGGAGAGGAACTAAAGTACAAGATCCTCCCACTATGGTCGCCAATGTTATGTACCGTATTTCTGGACTTGTATCTGATCTTAGATACAAGGTCCGATCCGAGATAGTTGGTAGGGGTTGGTCTTGATCAACCGAGCTCCGCTTCCGATCCGGGGCAGGTGGTACCTGCGGGGACACTCCGACTCTCAAGTCAGCTAGGGAACTGATTAGAGGTAAAGAGTAGGAAATTGTGTGTACCTTAGACATTGCGTTGAATGCTTATTTATAGGTTTCAGGATCCAATGAAAATTATTGAATCTAGGTCTTTAATCTCCACCATTGATTGATGGATCTGTATTTGGTGTTGGGCCTTAGTGATAAATGCACAATCCACTGAGGCCCAATCCGTAGAAAATATAAATAGATAAAAAACTAAAATTTTTGAAGGAACTCACAAACAAACATATTTAAGCCTGGTGAATATCAAAGGTGTAATTTACCAAGAAAAATGAGAGTGCAAAAGTTAATTTTATTTTATTTTTTGACAAAAATTAATTTTATTTTATTTTATTTAAAATTGACAATATTATTACTACCTGTTGACGTAAGAAAAGGCAGCAAAGGTGAGAAAGTTAATTTTATTGAAAACTAAATTTTTTTTACAAAATATTTAAGCATAGTGAATATCAATGGTGTAGTTTACCGAGAAAAATAAGAGTGCAAAAGTGAATTTTATTTTATTTAAATGGACAATATTAGTATATTATTACCTGTTGACGTAAGAAAAGGCAGGAAAGTCAGAATCTGTGGATTAAAACAGAAAAGAAAAAATAAAAAAGGAGGGCGAGTGGGGGAGTAGAAAGATTGGAGTTAGTTGGTGGGGAGAGAAATGAATGAACCGTGTGTTGTGAAAAACGCGGGTGAAAAAAAAACGAAAAGCATTAGTAACAGCAAGCAACAGTAATAGAAGATAGATAGATAGATATCTGTCTGTTGTGGTATGGTTGGTTGGCTTTTATTCTTTCTTTTTCTCTCATTTGTGGAGTAGAGTAGAGTGGAGTACACAACGCCGCCTCTCTCTTTCCTTCTTCTCTTTCTCATCACTCTCTCTTTGTCTTTTTATTTATTAATTATTTTCGAAATAAAATTCTAATATGATTTGATTATTATTAATATTTTTTATTTTTATTATTGTCGTCGTTGTTATTCTCGCTGTTGTTGGTGGAGGTTGATCTCGGGGAGTTACATTACATACATACACAGAGGTTGAGTGAGTCGTTCGTGAGTGTGTTAGAGTGACAGCGTGGTGATGATATGCGTGT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00642.27	zf-CCCH	43	68	1.40E-45
PF00642.27	zf-CCCH	88	113	1.40E-45
PF00642.27	zf-CCCH	135	159	1.40E-45
PF00642.27	zf-CCCH	291	315	1.40E-45
PF00642.27	zf-CCCH	337	362	1.40E-45

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0003729	mRNA binding	Molecular Function
GO:0047792	cyanohydrin beta-glucosyltransferase activity	Molecular Function
GO:0016301	kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR036855	Zinc finger, CCCH-type superfamily
IPR000571	Zinc finger, CCCH-type

trEMBL

trEMBL term	Description
A0AAN9JD96	_

SwissProt

SwissProt term	Description
ZFNL_PEA	Zinc finger CCCH domain-containing protein ZFN-like

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G02830	zinc finger protein 1
Medicago sativa L.	MsG0780039816.01.T01	_
Oryza sativa L.	LOC_Os11g28270.1	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Cucumis sativus L.	Csa010893	_
Glycyrrhiza uralensis Fisch.	Glyur000226s00010834.1	_
Codonopsis lanceolata	Cl_chr07_19640T	_
Arachis hypogaea L.	AH14G32110.1	Zinc finger CCCH domain-containing protein ZFN-like like

Expression pattern