Gene detail

Detail information of Am09G004980.1 Annotation

Gene ID	Annotation
Am09G004980.1	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G004980.1	mRNA	Chr09	23942966	23955972	+

Sequences

CDS:

>Am09G004980.1
ATGTATATGGCATATGGATGGCCTCAGGTCATCCCTATGGAAAAGGGATTCTCTTCCTCTATACAGAAAATTGTATACCTTAAACTCATCAATCGCGTTTTGCTTGTTGTCTCTCCCACTCACTTTGAACTCTGGAGCTCTTCCCAGCATAGAGTACGATTGGGGAAGTACAAGAGAGATTCGGATTCATTACAGAGGGAAGGAGAAAACTTGCAGGCTGTGTGGAGTCCTGATGCCAAATTGATTGCTATTCTTACATCTTCTTTCTATCTTCACATTTTCAAGGTCCAGTTCTTGGATAAAAAAATACACATTGGTGGGAAACAACCCTCTGCTTTGTGCCTAGCTACTATTTCTCTTCTGCTTACCGAGCAAGTTCCTTTTGCAGCAAAGGATTTGTCGGTGAGCAATATTGTTAGCGATAACAAACATATGCTGCTTGGACTTTCCGATGGAACTTTATACAGTATGTCTTGGAAAGGGGAGTTCTACGGAGCTTTTCAATTTGATCCGCATCCTCCTGCTAGCTTTGATGATTCTCAAATTCCACATTCTCTAGAGAATGGTCTTTCTCCTAAAGGCCTCCGAAAGGTTCCTATGTTCAGTCACATTGTTTCCAGAAATTATGAAATCAATCAGCTGGAACTTTGCCTTTCATTGAGGTTGCTTTTTGTCTTGTATTCTGATGGACAACTTGTCTCATGTTCCATTAGTAAGAAAGGTTTAAAGCAAGTTGACTGTATTAAAGCAGAAAAGAGGTTGGCTTGTGGGGATGCTGTATGTGCTTCAGTGGCTCCTGAGCAGCAAATTCTTGCTGTTGGTACCAGAAGAGGAATAGTGGAGTTGTATGATTTGGGTGAATCGGCATTGCTTATACGCACGGTTTCTTTATGTGACTGGGGATATTCAATGGATGACACTGGCCCTGTTAGTTGCATTGCTTGGACACCTGATAATTCTGCTTTTGCAGTTGGGTGGAAATTTAGGGGGCTGACTGTTTGGTCTGTTTCTGGGTGTCGCTTAATGTCAACAATCCGACAAATAGGTTTAAGTTCTGTATCTTCTCCAATTGCTAAGCCAAACCATGATTGTAAGTATGAACCATTGATGGGTGGTACCTCACTGATGCAGTGGGATGAACATGGATATAGACTTTATGCAATTGAAGGGGGATCTTCAGAGAGAATTCTTTCATTCTCTTTTGGAAAGTGCTGTCTTAGCAGAGGTGTTTCTGGCAGTACATACATCCGGCAAGTGATTTATGGGGAGGACCGGTTACTCATTGTGCAGTCAGAAGAGATTGACGAACTTAAAATGCTGCATCTTAAGCTTCCAGTTTCTTATATTTCCCAAAACTGGCCTGTTCAACATGTGGCAGCTAGCCAGGATGGAATGTACTTAGCTGTTGCTGGTCTGCATGGTTTGATATTGTATGATATACGATTGAAAAGATGGAGAGTATTTGGAGATGTTACCCAGGAACAAAAGATTCAGTGTAAAGGTTTGTTATGGATGGGGAAGATTGTCGTTGTCTGCAACTATATTGATTCTTCAAACACGTATGAGTTGCTCTTTTACCCAAGATATCACCTTGATCAAAGCTCACTGCTCTGTCGAAAACCATTGCTTGCTAAACCAATGGTGATGGATGTGTACCAAGATTATATACTAGTCACATATAGACCGTTTGATGTCCATATATTCCATGTGAAGTTATTTGGTGAATTAACTCCTTCAGGAAATCCAGATTTACAGCTTTCTGCAGTACGAGAACTTTCAATCATGACTGCCAAGAGCCATCCTGCAGCAATGCGGTTCATTCCTGATCAACTTCCAAGAGAACCTATTTCAAAAAATTACATTTCATCTTCATCAGATTTATTAACAAGAGAGCCAGCAAGATGTTTGATATTGAGATCAAATGGGGAGCTTTCGCTTCTTGATTTGGATGATGGACGAGAGCGAAATCTTACCGATTCAGTTGAGCTATTTTGGGTCACCTGTGGCCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGGTTTGGTATCCATCTCCAGGTGCTAATCCTTTTAAGCAGGAGGATTTCTTGCAGTTGGATCCAGAGCTGGAGTTCGATCGCGAAGTATACCCTCTGGGACTTCTTCCAAATGCTGGTGTAGTTGTTGGTGTTTCCCAGAGAATGTCATTTTCAGCAAGTGCAGAATTCCCATGTTTTGAGCCAACTCCCCAAGCACAAACAATACTCCACTGCCTACTCCGCCATCTTCTTCAGAGGGATAAAATTGAGGAAGCTTTAAGGCTGGCTGAGCTATCAGCAGAGAAGCCTCATTTTTCACATTGTCTAGAGTGGCTTCTTTTTACAGTATTTGAAGCAGATATATCCAGGCCAAATGTAAATAAGAACCAGATCTCAGTTCTTAAACACGCAAGAAGCACTCTTTTGGAGAAGACCTGTGATCTTATCCGAAATTTTCCAGAGTACCTAGATGTTGTTGTAAGTGTCGCAAGAAAAACTGATGGTCGCCATTGGGCAGATTTGTTCTCTGCTGCCGGAAGATCAACAGAATTGTTTGAGGAATGTTTTCAACGTAGATGGTATCGCACTGCAGCTTGCTATATACTTGTGATTGCCAAACTTGAGGGTCCTGCTGTGAGTCAGTACTGTGCTTTACGGTTATTACAGGCAACACTTGATGAATCTTTATATGAGCTTGCTGGAGAACTGGTGAGGTTCTTACTAAGATCTGGTAGGGAATACGATCAAGCATCAACCGATTCAGATAAACTTTCTCCCAGATTTTTGGGCTATTTTCTTTTTCGTTCTAGTGAGCGAAAGCAATCATTGGATAAAAGCACCTCGTTCAAGGAACAAAGTCCTCATGTTACCTCAGTTAAGAATATCTTAGAAAATCATGCTAGTTACCTGATGGCAGGAAAAGAACTCTCCAAGCTTGTTGCATTCGTAAAAGGCACTCAGTTTGATTTAGTGGAATATCTACAACGTGAAAGATACGGGAGTGCTCGGCTGGAGAATTTTGCTTCAGGGCTTGAACTAATAAGCCAAAAGCTTCAAATGGAAACATTACAGAGTCGATTGGATGCTGACTTTCTCCTGGCTCATATGTGCTCCGTCAAATTTAAGGAATGGATAGTTGTCCTGGCTACTCTCTTAAGACGTTCTGAGGTTCTTTTCGATTTATTCCGTCATGATTTTCGGTTATGGAAAGCATACAGCACGACACTGCAGTCACACCCAGCATTCACTGAATATCAAGATTTGTTGGAAGACTTAGAAGAGAAACTTGCATCTGTTGCAAATGAGGAAGAAAAATGA

Protein:

>Am09G004980.1
MYMAYGWPQVIPMEKGFSSSIQKIVYLKLINRVLLVVSPTHFELWSSSQHRVRLGKYKRDSDSLQREGENLQAVWSPDAKLIAILTSSFYLHIFKVQFLDKKIHIGGKQPSALCLATISLLLTEQVPFAAKDLSVSNIVSDNKHMLLGLSDGTLYSMSWKGEFYGAFQFDPHPPASFDDSQIPHSLENGLSPKGLRKVPMFSHIVSRNYEINQLELCLSLRLLFVLYSDGQLVSCSISKKGLKQVDCIKAEKRLACGDAVCASVAPEQQILAVGTRRGIVELYDLGESALLIRTVSLCDWGYSMDDTGPVSCIAWTPDNSAFAVGWKFRGLTVWSVSGCRLMSTIRQIGLSSVSSPIAKPNHDCKYEPLMGGTSLMQWDEHGYRLYAIEGGSSERILSFSFGKCCLSRGVSGSTYIRQVIYGEDRLLIVQSEEIDELKMLHLKLPVSYISQNWPVQHVAASQDGMYLAVAGLHGLILYDIRLKRWRVFGDVTQEQKIQCKGLLWMGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKPLLAKPMVMDVYQDYILVTYRPFDVHIFHVKLFGELTPSGNPDLQLSAVRELSIMTAKSHPAAMRFIPDQLPREPISKNYISSSSDLLTREPARCLILRSNGELSLLDLDDGRERNLTDSVELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQVWYPSPGANPFKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSASAEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAELSAEKPHFSHCLEWLLFTVFEADISRPNVNKNQISVLKHARSTLLEKTCDLIRNFPEYLDVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYCALRLLQATLDESLYELAGELVRFLLRSGREYDQASTDSDKLSPRFLGYFLFRSSERKQSLDKSTSFKEQSPHVTSVKNILENHASYLMAGKELSKLVAFVKGTQFDLVEYLQRERYGSARLENFASGLELISQKLQMETLQSRLDADFLLAHMCSVKFKEWIVVLATLLRRSEVLFDLFRHDFRLWKAYSTTLQSHPAFTEYQDLLEDLEEKLASVANEEEK*

Promoter(3k):

>AM09G004980.1
TACGAATTTATCTACTAAATAGACAAATCCGTTTGGAATTTTTTTATCACTACGAAATTACCAATTCAACATATAAATCCGTTTGTTATAATAATTGGATTATCATATTTATCACAAATCCGTTTGTTAGCTTAAATCCGTTGTAGTTGTGGCCCATTTATGCTTTGAGCACTTTTTGAGCAGGTTCATCATTCTCAATCCGGATTTATCTCACCACGTACGGATTTATCTCACCGGCTGTTTTTTACCCCCCTCTTATACCATATACCCCCCCTAAATGACCAAATGGACGAAACTACCCCTTAAATCCACAAAATTTTCGGAAATACCACAAATCTAGATAAATCCGGAAGTATGTTTTTTTGATTTTCCGGAAATATCGCATTTTACGGTATTTCTGGAACACATTTTACATTCAGGAAATACCGTAAAATGCGATATTTCCGGAAAATCAAAAAAACATATTTCCGGATTTATCTAGATTTGATGTATTTCCGAAAATCCCTTAAAATTGCCTTCCGAATTTATCATATAATATGGTGTTTCCGAAGTGCAAAAATAAAAAATGAAACATTTATTTCATTAATTAAAAATGCCTTCTACATTGATTTAAAATAACAGATTACAACAACAAACAAAACGAAAACATAATAGAAACTACTGAGATGGTGGAGTGAAACGACGAAGGATCTCAGCGACAGTCCTTCTGGTTTCGACGTATAAATGTAGATAACCCTTCCATTTAAAGATAACATGAATGGCCATCATGGCTTGGACGTCATCGTCGTTGTTGACATCCATTGTAGACCAGTGCACACGTTCATTAACCCAAGCTGGTTTCCGATAAATTATACTAATTATTTCATGCTCGTCGCCCTCCAGTTGCACCTTACGCAGTAGTCTCTTTTTCAGGGCAGCGAATGTTATGTTGTGTTTTAACCTACACTGGAACGTGTCTCGCCCCTCGAAACAGACATCATCATCTTCGGTGATGATGATGCCCTGATGATCAATGAGGCCCTGATTAGTAAAAATGATAGTGAGGGAAGAAGACTCTTCGTTGGCCATAGCCATCATCATTTTGTGTTGATACTGTATTGATACTGTATTATTATTGTTTATTAGTTTAGCGAGTTTCGTTACATTTAATTATTTCACGTAATTTTTTTTAATTTAAAAAATATATATATATATTTTTTTAAAATTTCCGGAAATACACATATTTCCGGAAGATAGAAATATGGGTTTTTTGGAAATACCTCAAAAAGAGGTATTTCGGGAAGCCAAAATGGCTCCCGGAAATACCTCTTTTTGAGGTATTTCCGGAAAACCCATATTTCTGCCTTCCGGAAATATGTGTATTTCCGGAAATTTTAAAAAAAAAAAATTTTTAACAAAAAATTAGGGGTATTTTGGGGATTTATGGTAAAATGGGGGTATGGGGTCTAATGAGGGGGGTACAAAAAAAACAGCCTATCTCACCATGTAGCTTAAATCCGTTGTTGCCTTCAAAATAAATCCATTTTCACCACAAAAATAAATCGTTTTCATATCAAGCATTAATCCGGTATTTCAAGGATAAATCCGTAGTGGGGAAAAAATTCAAATGGATTTATATATTTAGTAGATAAATCCGTAGTTAAAAAATGAACTACAGATTTATCTTTTTAATAAATAAATCCGTTTAATATTTTATTTTTTGATACCAGCAAAATTGACAGGGGTAAAATGGGAAAAAACAAAAATGGTGGGGGTATAGAGGCCAACAGTGGGGGTATAAAAAACACTATCCATTTCTAAGCTATGTCTATGTCCCTTTTTTTGTGACATAAATGGGCCAAGCCTATAGCAAAAAGAAAACTACAGACTAGATCCAGGAAGCCCAATTCTCTCAGAATTGAAGGCTTGGATTAAAAAGTCAGGAATCGAATCATAAATAATACAACCACTACTAGTGAGAGGCTCTGTTTAGCCATGATATTAGCCAGACAATTTCTATCTTTTTCAATCTTCTTCCAGTGGAAACCTTCAACTTTTGGACCGATATTAATGATCCCACGAACAAGCTGGTTAAGCGCATGTCCTTGAAAATTCCTGGTCATTAGCAGATCAACAACCACCAAAGAGTCCAATTCAACCATCAAGTTGTCAATTCCTTTCCCACGGGCCATGCAAATGCCGTGATAGACTCCCCAAAGCTCCGCTTCGAGAGCTGAACAGGGATCAAGGTGATGAGAGAAGGCTAAGGAGAAGTTCCCAGTTGGAGTGCGGCGAACACCACCACACCCTGCAATTTTGCCATTGTTACCCACAGCTCCATCACAATTGAGCCTTAGAACCTGTTTGAATAGAGCTTATTTTGAGCTTATGGAAAACAACATTAGCAAATAAATAACCTTTTATATTACTAACGCTAAGTTCTTACTAACAAAAGTTATATCTCCATAAGTTGTTTTCCTCCGTAAAAAAAAGTTGTTTTCCATAAACTACGTTGACAAACTTATGAATAATACATAAAAACGTACTTATTTGCACAAATTATTTTTTATAAGCTCAAAATAAGCTTTATCCAAAACGGGATTTCTCACTCTAAAAGCCACATAATGCATAGTATTTTTGACAGGGTGTATTTATTATTAAATTCTTATTCTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTTGGGTACAAATTACTATTATTATAAAAAAAATGTCATAAAAAACTATTATAACAATTATTATTTTGTTGCATAAACGATTTTTTATTTTTTATTTTTTCAGTGTGATGTTGTTGTTGGGTTGGCCTCGTAGTTGAACTTGGTTCTTCCCAATTCCAAATCGAAATCGAAATCGCGGATCAAACCTGAGAAAGAAACACATGCATCAATCTTCTTCCTTCGTATCCCTCTACATACAGATTCTAGATCTACGATCAATTGCAGTAATCTGAAACGAATCTGAAAAGAAGAAGAAGAATCACAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF07064.16	RIC1	679	931	3.50E-69

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0034066	Ric1-Rgp1 guanyl-nucleotide exchange factor complex	Cellular Component
GO:0006886	intracellular protein transport	Biological Process
GO:0042147	retrograde transport, endosome to Golgi	Biological Process
GO:0000139	Golgi membrane	Cellular Component
GO:0005829	cytosol	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR009771	Ribosome control protein 1
IPR040096	RAB6A-GEF complex partner protein 1

trEMBL

trEMBL term	Description
A0A1S2XS82	_

SwissProt

SwissProt term	Description
RIC1_MOUSE	Guanine nucleotide exchange factor subunit RIC1

KEGG

KO	Description	Enzyme
K20476	RAB6A-GEF complex partner protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G61480	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Medicago sativa L.	MsG0780039717.01.T01	_
Oryza sativa L.	LOC_Os02g54500.1	WD40-like, putative, expressed
Cucumis sativus L.	Csa005505	_
Glycyrrhiza uralensis Fisch.	Glyur000454s00019916.1	_
Codonopsis lanceolata	Cl_chr03_29260T	_
Arachis hypogaea L.	AH14G31010.1	RAB6A-GEF complex partner protein 1 like

Expression pattern