Gene detail

Detail information of Am09G004790.1 Annotation

Gene ID	Annotation
Am09G004790.1	SKP1-like 21

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G004790.1	mRNA	Chr09	23355594	23364568	-

Sequences

CDS:

>Am09G004790.1
ATGTCAGAAATTGACAGGGCAGTTCTTAAACCAAAGCCCTATATTTGGCTTCAAACTTCAGATGGTTCGATCAACCAGGTGGAACAAGAAATTGCAATGTTTTCCCCTATTATTTGTAGAGAAATAATTGAGAAAGGCATGGGATCTTCCAAAATTTGTCCAGTGTGTCTTCCTGAAAAAGTCACTCCCGAGACACTAAGCTTAATTCTTGATTATTGTCGTTTTCATCATGTACCAGGTCGCTCAAACAAGGAACGGAAGTCTCATGATGATAAGTTCGTTAAGATGGGCACAACAAATCAGCTCTGTGATGTGGCATGTGCTGCAGAAAGCCTTCAGTTGAAGCCATTGGTTGAGCTTACAACTCATGCACTCGCTCGAATAATTGATGAAAAATCTCCAGAGGAGTTAAGTGCTATGTTGGGTATGCGTGATGATCTTACAGAGGAAGAGAAATTGGCACCCTTGAAAAACATAATTGGTGACCCAACTATCAGGCTTTGGAACGTTTTGAATGCCAGAAAACTAAAAGAGCGTGAGAGGTTAAAGAAGGCTGCATTAGAAGAAGAGCATGTAAAAGAAGGTTCTGTAGATGAACGTTCGGTTGATGACCTTTTGTCTTTTATCAATGGCAATGATGCTGATCCAAAAACTTCTAAGAATAAAAAGAAGAACCGAAAGAAAAAAGGCAAACAAAAGAGCTCTTCTGTAAAGGTAGATTGTGAGCTGAATAAGACAGCTGTTGAGGTAACTGGTCATGATATCAAAAACGAAAGTGCCAAATCTGGTGAAATTGCTGCCGAAGACGACACTTTTACTCACAATGAGTTTGATGATGGAGATGATGAGATTGATCCTGCAATAAAGGCAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGTCGTTTAAATTCTGACTGGCCAGAAAGGATACGAGATTTTTTATCATCCGGGCAAGAAAGGAAGACAATGCTTTTCACTACCGACAGGAATGGTTTTCCAAGGAGAAATACTTGTATGCCTTTCCCACACGTTTTCAGACTGGGCTCACAACAATGGAAATGA

Protein:

Promoter(3k):

>AM09G004790.1
CCTGCGGTGGTCGGAATCTGCAGGTTTGTTTTTTTTTTGATTTTTTCGGTTCTTTTTCTTGTCTCTTCATTTCTGTTTCTAGATTATACTGTTCCTTCTTTTCTCCTCCTCCAAATTTCGTTTCTTAAACCTCTAAAAACTTAAACCTTTTTTTGTAACAAGCAAACCTTTTTTATTGTTTTTTTAGCCATTAATATGATTTTTTTTCATGTTATTTTCGATTTTAGTAAAACAAAGGTTGGATCTGAATCCTAAACCGAAACCCTAATTTTTCTAGCAAAGCCCTACACATTTTTTTTATTTCGTTTATAAAGGAAAAAAAGGCAAACAGATGAACCTATTTTTTTAAACGTGAACCTAATTTTGTTTATCTAAGTTCCAATATTTTTGAGTAAGTAAAAAACGGAAAAAAAATAACACACATAGGAATAGGAGAGACCAACCTAATTCTCCAGCTTCTAAAATGACTCACTTTTGCTACTGAAAATAGGATAACTGCAACCGCTCCTTTATCTTCTCTGGTTGTTTTTTTTTAGTGCGAATTTTCTGTGTCAACTTGTTCTCCCTTTTATGTCTGATTTTGCTGGTTTTTATAGGTAAAAATATGATAAAAAATTAATGATTTCAATCTTTTGTTTCCATCTCAGGTTCCTGGCCAGCTGTGAAGAAGCTTGCTCACCAAGATTAGGTTAAGGTTGGAGGCAGTAGTCTTGCTCGGCAGCTGTTGGTATTTTTGGGCCAAGTCCCTTTTTTGTGTAATTTTGTATTTTGGGCTAGGTTATGTACATAGAGACATTTCGACTAATTCTTTCTTGCACCTCCTCCTTTTCTATTATTTTTGTTTTTTATATTTTTATAAAAAAAATGTAACAAGATTTGATAAATAATTTAATTCCATTTTTTGTAATTTTTTTGAATTAGCATATATATACTTTTTTAATTTTTTGTTTAACCACTAAAAAAAGTAATAGTAATGCAAAATTAGTAAATGAGCGCAAAATGACCTATTCGAGGGATTGGGAATCAAATATACGCGAAAAACATATTTTTGTGATTTTTTTGAAAAAATAAGAATATACCGATAAAAATTGGGTGTTCACATCAACGCTAAGAAGAGGAAAACATTAACACTAAGAAGAAGAAGAAATCAGCGTTAAGAAAATCAAAAGGAGGGATGAAGATAAAAACAAAATCATGGGCAGTCAAACCCAAACCCAAACCCAAGTTTATTCAATTCAATCCCAGATCTTAAATTCCTCATCTTCTCAAATCCCTTTTATTCAATTCAAACCCAAACCTAGATTTACAAATGAAGAAACCCAAAACCATATCTTAAATCATGGGCAATCACATGTGATGAAGATAAAAAAATCAAAAAGAGGGAAAACGTAAAAGCAAAATCGAAATGAAACGAATCATGAAACGTAAAAAAGAAATCGAAATACAATCAATCGTAAAAACATAAAAACGTAACCAAACAAATCATGAAACGAAATCTCCATCTTCACCGTTAACCTAAATCATGAAATGAAATCAAAATGCAATCAATTGAAATGAAACTGAATCGAAATGCAATCGAATCGAAATGCTGAAACGCTAGATTTCTGAATTTGAAGCGATTGAGACTTGATGCAATTCTAGGTTGGTTTTTTGGATTTTCACCGTTACAAATTTGTTTGATTAATGTTCCTCTTTCAATTTCACTTTTTCCCTCAGATCTGTTTAAACAAATATTTTTTGGTTAAGGTTGAAGCATTTCATTTCGATTTGCACAAAATGAGGGCTTGAATCTAGCTATAATTTGGACAGCAAGATCTTATCAATGGTGAAGAAGATGAGGATGCTGATAATGGATATTCATTTTTTTTTTATTTTTAATAAAAAATAATGACTCATGAGTCATCGCTCTCGTGACTCATGTATCTTACACCATTACAGCCACGTCACCCACGTAACTGACACGTAAGCTTCCGTTTGTGCCAACCGAGCATTTTTGTAATAAAAAATACTAAAAAGGACCAACGTGTAAAATACCAACTTGCTACCAAAAAAAATACTCAAAAGACCATTTTGCCTAAATTAAATTCATATTTACAAGCAACATATATCTCCTGCACAGCACGAAGGGGTCACTTTCGTAATTGGGCTCACTTCACTTCCGTACGACGTCGTTTTGCCACTCCCCACTTCGAACTAAACTGAAAAGTGAAAACTTTCTCTACTGCTCATTTTTCTTTCTCATCCAAATTAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGCCGACGGGCAAGCGCCAATTCCCTTCATTTCAAAGCAAAACCCTCTCTCCCTGTCTTCTCAGGTACTTCACGCTCAGCCCCTTTTCTTCTTTTATTTTTTCTCTCTCTCCATTTCCATGTAACGTATGGATTCCCTTGCTCCATTTGAATATTCACCATTGTTTTTCATGCCATATCTTAGTTGTTTTAAGCTAAACTAGGCGTAAGGAATCGTCGGTTGTCTTAAAAATGAGTTTTTTCTTTTTAATTTGCACAAGCTTATAATCTGCTTTTGTTTTTGCTGCTGATGTTATTTTCTTTTGTTTGACTTGCTCAAAATTATGATGTAAGCAAAAGTGCTAATGGTTAATTATGTTTCTGTATAGTTCCTGATTGGCTAACAAGCATCCCTTTCTTTTGATTGCTGAGATTTTTTGAAAATAAAGATAAAAATTACTTGTGCTTTTTTGCTTAGTGGACACATAAGTTGGTTTGTTTATTCTGTGTGTGTTTGTTTTGTGTGACTTTAATATGATATATTAGTATGTAATGTAATAATGCCAATTAAAAATGAAACTTTTTTTTTGGGTACTTGTTGCAGTTGAATCAGTTTATTGAGAAGTTGCTCGAGCATCTTAATCCTGACAGCAGAAGTCTGATTGTCTGGAAGTTTCCACCTCAAAGAAGCTTCCAACATCAACAGCTTTTACTTTTAAAATTGGTTGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03931.18	Skp1_POZ	14	78	4.70E-08
PF01466.22	Skp1	115	152	1.20E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	Skp1
Ubiquitin Family	Skp1

Gene Ontology

GO term	Description	Category
GO:0016874	ligase activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016567	protein ubiquitination	Biological Process
GO:0010498	proteasomal protein catabolic process	Biological Process

InterPro

InterPro term	Description
IPR001232	S-phase kinase-associated protein 1-like
IPR016897	S-phase kinase-associated protein 1
IPR036296	SKP1-like, dimerisation domain superfamily
IPR011333	SKP1/BTB/POZ domain superfamily
IPR016073	SKP1 component, POZ domain
IPR016072	SKP1 component, dimerisation

trEMBL

trEMBL term	Description
A0A3Q0FDL7	_

SwissProt

SwissProt term	Description
ASK21_ARATH	SKP1-like protein 21

KEGG

KO	Description	Enzyme
K03094	S-phase kinase-associated protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G61415	SKP1-like 21
Medicago sativa L.	MsG0880043156.01.T01	_
Oryza sativa L.	LOC_Os03g01660.1	SKP1, putative, expressed
Cucumis sativus L.	Csa015433	_
Glycyrrhiza uralensis Fisch.	Glyur000264s00019965.1	_
Codonopsis lanceolata	Cl_chr07_10280T	_
Arachis hypogaea L.	AH04G26170.2	SKP1-like protein 21 like

Expression pattern