Gene detail

Detail information of Am09G004540.1 Annotation

Gene ID	Annotation
Am09G004540.1	Acyl-CoA thioesterase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am09G004540.1	mRNA	Chr09	22485383	22498310	-

Sequences

CDS:

>Am09G004540.1
ATGGCAAGGGAAGAAGTGATTGAGTTCCTCGGGTGCGTTCCTTTGCTACAGAGGCTTCCTGGTTCGTCTGTACAGAAGATATCTCAACTTGTGATTGTTAAACACTACGAGCCGGGAGAGTTTGTTGTTCGTGAGGGAGAATCTGGAGATGGTCTTTACTTCATTTGGGAAGGAGAGGCTGAGGTTGTTGGATCTGCTAGTGCTGATGAAGAAAATCATCCAGAGTTTCAACTGAAAAGATATGACTATTTTGGTTTTGGTTTGTTAAATGCAGTTCACCATGCTGATGTTGTAGCTTTGACTAAGCTATCATGTTTAGTGCTTCTGCATGAGCACTCGACACTGTTGCAGCCACAGTCTATCTGGAGTGCAGAAAAGTCTCCTGAGACATGCTCACCCGTGGAGCATATATTGCATTTGGAACCAATAGAGGTAGATCTCTTCAAAGGAATAACCACTCCAGATGCTCCACATTTCGGGCAGGTATTTGGGGGACAGTTACTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGATTGTCAAAAAGTTGTTCATAGCTTGCATGCCTATTTTATTCTTGCGGGGGATTTTAACATACCAATTATATATCAAGTTAACCGTCTCCGTGAGGGGAAGAGCTTTGCTACGAGGAAAGTGAATGCAATTCAAAAGGGAAATGTAATATTCACTTTACTTGCTTCATTTCAGAAAGAGGAACTAGGGTTTGACCACCAGGAAGTGTCTATCCCATCTGTCCCTGCCCCAGACAAGCTTTTACCAATGGAAGAGTTACGAGAACAGCGTCTTACTGACCCTATTCTTCCCAGAACATACCGGAACAAAGTTGCTAAATCTAAATTCATTCCCTGGCCCATAGAGATACGGTTTTGTGAACCTTCACCTGCAACAAATCAGACCAAATCTTCTCCTAGTTTAAGATTTTGGTTTAGAGCAAAGGAAAAACTGTCAGATGACCAAGCTTTGCATAGGTGTGTGGTGGCATATGCTTCAGATCTGGTATTACTTCAAGTAAGTATAAATCCCCACCGTCGGAAGGGCTTAAAGATACGGTCTTTGAGTTTGGACCATTCCATATGGTTTCACAGACCATTAAGAGCTGATGACTGGTTGCTATATGTGATTTTTAGTCCGACTGCCTTTAATGCACGTGGCTATTGCACAGGCCAAATGTTTAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGTCTAGCGAGGAAGGTTAATGCCAAGTTGTGA

Protein:

Promoter(3k):

>AM09G004540.1
AAGAACAGTAGAAGAGTGTTAATGATTAAACTTTTGGAAGATGATGAGAGAAAATGATAGAAAGGGAAGGGCTGATCTGAACCTGGAGGACAGAGAGAGGTACAGCGAGAGAGAGTGAGAGACTACGAGGGAGTATGGGAGGGGCCAATCCATTTTGTTATTTCCCTCTCCATTTCGTTTCCCTCTTTTGGGGCCACTCCACATTGACGTTAACCCTAAGACTCTTCCAGTCCTTTGCGGTTTCTTTTGCGACGTCTTCTCCGATCTTCTTTGGAGATAGACCGAGTGGACTGAACATTTAAGCGAGGGAACTGACCGCACCGACTTCTCCTCCGGTTACTTGGACGTAGAGATCGACGAACTGTGAGGGGTCGAACTTTGGCGGCATTGTTGCACTGTTTGCAGAGCGATTAGGGTTTCAGAGCAAAATCAGTGCTTTATTTTTCTTCTACTATTTGCAGAGGAAAGGAGGTGGTTGGAGGAAGAGGAGATGATGCAGGGAGAAGCGAAAAGGAGGAAGAAGAGAAGAAAATGAGGTCGGTGAGATTGGAGAGAGAAGACGAGGAGGGTAATGTGGAGTGTAGCTGGAAAGTGTAAGGGACATTGATTATGAGAAATGGAAAGCTTGTGTGAACGCAATCAATTAGTCAAACTTGGGCAATTTTTTCTTCTACAATAACAGTACCAACATTAGTGGTCTGCATAATTGTCCCAAATTAAATACACAGGATGCATTAAAAGTCAACATCCATAAAAAATGCGTTTTGTAAGATAATATGGTTAAGTTGGTGCAAAATTGATTTGTTGGTGTGAATGGAAATGTGTAAAGCGTTTTTGTATTGTATATGTGTGTAACATCTCCGAAAAAAACCCAAACCGGGCTAACTAATGTGAATGCAAATATGTGTTCACACATGAATCTAGCATTATTTGTAGCATAAAAAATTGGTGATAGAACCAGGATTTATAAGAAGAGATTTGAGAAATGCACATTTACTTTGTTGTATTTTTTTTCTTGATAAAATTACTCTGTTGTACTTGTATTTTTTTGCCTATCATCTATTTTAAAAGGAAAAAAATCATATAGACACCGTAAAAATTATTTATCCATACATATATACATATTCGTGTGCACGCACACATGTATTATAAGCACTCTCTCCAACTTTCAATATAAACAAAAAAGTCTATTTTGTTAAGCACAACAAAAAGGAAAAAAGTCTACTTTTAAAAACTGTTTTTTATTTTATATAAATTAGTAAAGAACAAATTTGTCCTTTGAAAATTTTTGAGAATTGAAACTTGTTTTAAAAAAGGAACTTCAAATGAGCTCTATGTATTTGGTTCAAGTAGGACCAAAATATATAGATTTTTATTTTTTATTTTTTTTATATGTATTCTAAATAAAAATCGATTATGTCTTTCATCACAATCGCCTCGATTATGTGTGTCCCTTAGTCATACTTGATGATGTATTCTAAATAAAAGTCGATTATGTTTTTCATCACAATTGCCTCGATTTTGTTGCTTGTTCTAGAAAAGATATCAAGCTCAATAACAATATTTCGGCCACTTTGATTTTGTCATATTTGTAGGCATTTTATCGTTTTATGCTATTAACTCAGATGTTATATTCTAAATAAAGTCGATTATGTTTTTCATCACAATCGCCTCGATTTTGTTGCTTGTTGTTCTAGAAAAGATATCAAGCTCAATAACAATATTTCAGTCACTTTGATTTTGTCATATTTGTAGGCATTTTATCGTTTTATGCTATTAATTCAGATGTTTTTTTATATATCACTGCAGTTATTTCGTAGTTTTAATTGATTATTTTAGTTGATTAGTAGATTATAGTAGATAATAAAAGAGAGATAGTAGATTATCAATAAGAAATATTTGTTTTAAATACTAATCAGTAGTTTAAATAGTCATTAAATCTTCTTATTTTTTAGATAGTAGGTTTATAGCAGTCTTCAAAAATTTTAATTATCAATGACAAATATTAATCCCGTGTTTTTTTATATATCAGTGCAGTTATCCCGTGTTTTTTTATATATCATTGCAGTTATCTCGTAGTTTCAATTGATTATTTTAGTTGATTAGTAGTTATAGTAGATAGTAAAAGATAAATAGTAGATTATCAATAAGAGCAGTGGCGGACCCAGGACCCCGGGGTCAGGGGTGTCAAATTTTTTAAGGCCAGTGTCAAATGGGTGCAAAACTTGGTCTACTAGTACAATTTAAAATTTTCAGGAGCTTTGGGCTATTTATATAGGGTGGTAAGTGAAAAAAAAATTTCCAGGGGGTTCAACTGAACCCCCTGGATGTAAGCCAGGTTCGCCACTGAATAAGAGGTGATAGTAGATTATCAATAAGAGTGTAAACAGATTTCAGAGAGAAAAATTAAAATTTTAAGATGATAACTTTTTTCAAAAAAGGTGATAGTTTTTTGTTTTGTTTTTTAGTGTGACCCATTTACATTTTTATAGGTAATTTTAGTAGAGTAATGTTTATATAAATTTAGAAATTTAGTTAAAAAAACTAAAGTAGAGTGATAAGAGAAAGAAAAGAATTGTTTATGGGAAAAGTAAAAGTAAAGTAAAAAAAGGAAGAAAGAGAGTGTAAGAGAAAAGTGAAAAGGAAGAAATAGAGTGTAAGAAAAAAGAGAAAAAAAAGGAAGAAAGAGAGTAAGAAGAAAAAGAAAGAGATGATAATAATATTTTTACCCTTAAATTAGATATGTGTCTTGTTAAGGGTTGGCCACCCCTCCTACTCCCTTCAATGAAATTCAAATTCGTAATTTAATTTGAGGTTTGTTTGTATAAATAGATATTAGACTCTTAATAAAATAAAATAAATTTGTATTATAAACTTACAATAAATTTACATTTACTTTACTGATTAAGTTATGTTCTACGATCTTAACGAAGGCGCTAGTATAAATACGAAATCATTATGATCCCTGACTGATGACTACATTCTGTTGGCGGAACTGGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13622.9	4HBT_3	159	414	9.50E-55
PF02551.18	Acyl_CoA_thio	308	414	1.70E-35
PF00027.32	cNMP_binding	34	110	1.20E-11

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0047617	fatty acyl-CoA hydrolase activity	Molecular Function
GO:0006637	acyl-CoA metabolic process	Biological Process
GO:0016020	membrane	Cellular Component
GO:0009062	fatty acid catabolic process	Biological Process

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR029069	HotDog domain superfamily
IPR018488	Cyclic nucleotide-binding, conserved site
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain
IPR042171	Acyl-CoA thioesterase, double hotdog domain
IPR003703	Acyl-CoA thioesterase

trEMBL

trEMBL term	Description
A0AAN9PEZ6	_

SwissProt

SwissProt term	Description
ACH2_ARATH	Acyl-CoA hydrolase 2

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G01710	Acyl-CoA thioesterase family protein
Medicago sativa L.	MsG0780039687.01.T01	_
Oryza sativa L.	LOC_Os04g47120.1	acyl-CoA thioesterase 2, putative, expressed
Cucumis sativus L.	_	_
Glycyrrhiza uralensis Fisch.	Glyur000060s00004780.2	_
Codonopsis lanceolata	Cl_chr02_02600T	_
Arachis hypogaea L.	AH04G25710.1	Acyl-coenzyme A thioesterase 8 like

Expression pattern